Wall clock time and date at job start Mon Mar 30 2020 07:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46346 * 2 1 4 4 C 1.50698 * 109.47158 * 240.00139 * 2 1 3 5 5 H 1.07996 * 119.99904 * 245.51211 * 4 2 1 6 6 C 1.37880 * 119.99950 * 65.51048 * 4 2 1 7 7 N 1.31517 * 120.00072 * 8.30710 * 6 4 2 8 8 Si 1.86801 * 119.99922 * 188.30519 * 6 4 2 9 9 H 1.48493 * 109.47440 * 94.98729 * 8 6 4 10 10 H 1.48503 * 109.47238 * 214.99248 * 8 6 4 11 11 H 1.48506 * 109.46940 * 334.98909 * 8 6 4 12 12 N 1.46893 * 109.47395 * 119.99514 * 2 1 3 13 13 C 1.46894 * 111.00633 * 275.00626 * 12 2 1 14 14 H 1.09001 * 109.47102 * 36.97686 * 13 12 2 15 15 C 1.53005 * 109.46774 * 276.98268 * 13 12 2 16 16 C 1.52994 * 109.47646 * 156.98116 * 13 12 2 17 17 C 1.50693 * 109.47109 * 295.49225 * 16 13 12 18 18 C 1.38238 * 120.00827 * 98.14218 * 17 16 13 19 19 C 1.38221 * 120.01357 * 179.97438 * 18 17 16 20 20 C 1.38259 * 120.02608 * 359.70338 * 19 18 17 21 21 C 1.38192 * 120.01317 * 0.54776 * 20 19 18 22 22 C 1.38334 * 120.00763 * 278.11281 * 17 16 13 23 23 Cl 1.73600 * 120.01221 * 0.02562 * 22 17 16 24 24 H 1.09001 * 109.47321 * 303.80540 * 1 2 3 25 25 H 1.08995 * 109.47224 * 63.80719 * 1 2 3 26 26 H 1.09007 * 109.47116 * 183.80869 * 1 2 3 27 27 H 0.96996 * 119.99607 * 180.02562 * 7 6 4 28 28 H 1.00905 * 110.99549 * 38.95767 * 12 2 1 29 29 H 1.09003 * 109.46917 * 60.00076 * 15 13 12 30 30 H 1.09006 * 109.46914 * 179.97438 * 15 13 12 31 31 H 1.08995 * 109.47018 * 299.99987 * 15 13 12 32 32 H 1.09000 * 109.47516 * 175.48995 * 16 13 12 33 33 H 1.09002 * 109.47225 * 55.49349 * 16 13 12 34 34 H 1.08005 * 119.99424 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.98259 * 179.97438 * 19 18 17 36 36 H 1.08003 * 119.99291 * 180.29493 * 20 19 18 37 37 H 1.08006 * 120.00478 * 179.74190 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5778 -1.6374 -1.1339 6 6 1.7955 -0.1767 -2.4796 7 7 1.2781 1.0271 -2.5931 8 14 2.2095 -1.1636 -4.0106 9 1 0.9979 -1.8837 -4.4781 10 1 2.6827 -0.2460 -5.0781 11 1 3.2772 -2.1457 -3.6929 12 7 2.0197 -0.6923 1.1994 13 6 2.0824 0.2226 2.3469 14 1 1.2377 0.9105 2.3097 15 6 3.3893 1.0167 2.2950 16 6 2.0268 -0.5837 3.6459 17 6 0.6936 -1.2784 3.7492 18 6 0.5750 -2.6053 3.3802 19 6 -0.6477 -3.2428 3.4753 20 6 -1.7515 -2.5556 3.9454 21 6 -1.6354 -1.2276 4.3097 22 6 -0.4118 -0.5886 4.2139 23 17 -0.2637 1.0777 4.6776 24 1 -0.3634 0.5718 0.8539 25 1 -0.3633 0.4536 -0.9221 26 1 -0.3634 -1.0255 0.0683 27 1 1.1112 1.4022 -3.4718 28 1 1.4496 -1.4978 1.4100 29 1 3.4288 1.5912 1.3695 30 1 3.4356 1.6960 3.1463 31 1 4.2340 0.3289 2.3321 32 1 2.1538 0.0871 4.4957 33 1 2.8246 -1.3264 3.6470 34 1 1.4380 -3.1440 3.0174 35 1 -0.7399 -4.2794 3.1865 36 1 -2.7056 -3.0556 4.0241 37 1 -2.4987 -0.6898 4.6730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309786411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:08 Heat of formation + Delta-G solvation = -14.035467 kcal Electronic energy + Delta-G solvation = -18494.232705 eV Core-core repulsion = 15681.796472 eV Total energy + Delta-G solvation = -2812.436233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59564 -38.32342 -37.36129 -35.47975 -33.38552 -31.85134 -31.52357 -28.75083 -27.41674 -27.15447 -23.64654 -23.08802 -22.09828 -21.01900 -18.38365 -17.89309 -17.03792 -16.63375 -16.33906 -16.14594 -15.45990 -14.97741 -14.69816 -14.43878 -14.23964 -13.95442 -13.48989 -13.25846 -13.01381 -12.93243 -12.85344 -12.74569 -12.51226 -12.37012 -12.26902 -12.18925 -12.14668 -11.79771 -11.55623 -11.46760 -11.01331 -10.44850 -9.80229 -9.54854 -8.92114 -8.09618 -6.17209 0.23890 0.35186 1.21740 1.42922 1.43580 1.54907 2.45514 2.71265 3.20368 3.63900 3.74263 3.89815 4.11149 4.19788 4.40121 4.44678 4.48150 4.56493 4.70917 4.77263 4.81778 4.84573 4.96342 4.99592 5.02934 5.05975 5.27408 5.31947 5.42291 5.45846 5.52112 5.56466 5.64721 5.79682 5.93222 6.27401 6.71667 6.92516 6.99837 7.51457 8.98637 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.005806 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.940855 B = 4821.616600 C = 5253.518872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.219 3.781 3 H 0.004 0.996 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.267 1.267 12 N -0.679 5.679 13 C 0.089 3.911 14 H 0.021 0.979 15 C -0.131 4.131 16 C -0.076 4.076 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.050 4.050 23 Cl -0.078 7.078 24 H 0.018 0.982 25 H 0.042 0.958 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.331 0.669 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 -6.385 15.904 17.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.110 3.890 3 H 0.022 0.978 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.192 1.192 12 N -0.311 5.311 13 C -0.021 4.021 14 H 0.039 0.961 15 C -0.189 4.189 16 C -0.113 4.113 17 C -0.087 4.087 18 C -0.133 4.133 19 C -0.132 4.132 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.077 4.077 23 Cl -0.049 7.049 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.743 -6.018 15.662 17.191 hybrid contribution -0.867 0.367 -0.889 1.295 sum -4.610 -5.652 14.772 16.475 Atomic orbital electron populations 1.22115 1.00695 0.98407 0.98883 1.18885 0.89142 0.93096 0.87849 0.97833 1.21437 1.34421 1.08031 0.91118 0.92576 1.25727 0.95627 0.95609 1.01961 1.70096 1.46354 1.15985 1.24156 0.85565 0.78474 0.78633 0.79091 1.20170 1.21238 1.19167 1.60827 1.57585 1.09417 1.03256 1.21399 0.96850 0.93809 0.90006 0.96121 1.21717 0.97305 0.99405 1.00440 1.20787 0.93756 0.99542 0.97246 1.19929 0.95084 0.94802 0.98836 1.21345 0.99525 0.93286 0.99099 1.21602 0.92180 1.01558 0.97819 1.21451 1.00243 0.93319 0.98166 1.21304 0.95860 0.95901 1.00850 1.21039 0.96045 0.85821 1.04757 1.98346 1.98172 1.17662 1.90766 0.96345 0.93930 0.94752 0.93139 0.85056 0.95319 0.91157 0.91833 0.89392 0.89123 0.84101 0.82943 0.82474 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.02 9.03 71.98 0.65 -6.37 16 2 C 0.22 11.35 2.25 44.17 0.10 11.45 16 3 H 0.00 0.22 6.92 -2.38 -0.02 0.20 16 4 C -0.51 -28.84 8.77 25.60 0.22 -28.62 16 5 H 0.06 3.15 7.83 -2.91 -0.02 3.13 16 6 C 0.01 0.50 5.19 84.65 0.44 0.94 16 7 N -0.93 -55.07 12.10 21.45 0.26 -54.81 16 8 Si 0.96 44.52 29.55 68.60 2.03 46.55 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 N -0.68 -28.85 6.03 -473.33 -2.86 -31.71 16 13 C 0.09 3.23 2.44 44.92 0.11 3.34 16 14 H 0.02 0.83 6.53 -2.39 -0.02 0.82 16 15 C -0.13 -4.54 9.38 71.98 0.68 -3.87 16 16 C -0.08 -2.14 4.43 29.84 0.13 -2.01 16 17 C -0.09 -2.36 4.60 -19.84 -0.09 -2.46 16 18 C -0.11 -2.82 8.22 22.27 0.18 -2.64 16 19 C -0.11 -2.35 10.05 22.27 0.22 -2.13 16 20 C -0.11 -2.25 10.05 22.26 0.22 -2.03 16 21 C -0.12 -2.79 9.83 22.29 0.22 -2.57 16 22 C -0.05 -1.36 6.31 22.32 0.14 -1.22 16 23 Cl -0.08 -2.13 26.83 -2.72 -0.07 -2.21 16 24 H 0.02 0.83 7.46 -2.39 -0.02 0.81 16 25 H 0.04 2.33 6.78 -2.39 -0.02 2.31 16 26 H 0.03 1.59 8.07 -2.38 -0.02 1.57 16 27 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.33 13.14 5.92 -89.69 -0.53 12.61 16 29 H 0.03 1.15 7.28 -2.39 -0.02 1.14 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.27 7.27 -2.39 -0.02 2.26 16 33 H 0.09 2.37 8.02 -2.39 -0.02 2.35 16 34 H 0.14 3.20 8.03 -2.91 -0.02 3.18 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -63.54 315.25 3.11 -60.43 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.53 Total: 19.92 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 3.23 Total: -38.18 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -2.60 Total: -86.52 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.07 Total: -2.21 kcal Total: -63.54 3.11 -60.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309786411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.397 kcal (2) G-P(sol) polarization free energy of solvation -63.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds