Wall clock time and date at job start Mon Mar 30 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86802 * 119.99872 * 2 1 4 4 H 1.48503 * 109.46960 * 240.00236 * 3 2 1 5 5 H 1.48496 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47024 * 120.00124 * 3 2 1 7 7 C 1.39866 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00691 * 197.94932 * 7 2 1 9 9 C 1.41148 * 119.99915 * 17.94462 * 7 2 1 10 10 C 1.40880 * 120.15769 * 204.60507 * 9 7 2 11 11 C 1.36339 * 119.83455 * 180.02562 * 10 9 7 12 12 C 1.39561 * 120.16079 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.83996 * 179.97438 * 12 11 10 14 14 C 1.46501 * 120.00406 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47447 * 179.97438 * 14 13 12 16 16 C 1.53788 * 113.61224 * 175.00194 * 15 14 13 17 17 C 1.53776 * 87.17109 * 139.94147 * 16 15 14 18 18 F 1.39901 * 113.61708 * 89.15862 * 17 16 15 19 19 F 1.39901 * 113.61370 * 220.05759 * 17 16 15 20 20 C 1.53778 * 113.61824 * 272.49947 * 15 14 13 21 21 C 1.39566 * 120.31774 * 0.25205 * 12 11 10 22 22 C 1.36340 * 120.15989 * 359.48345 * 21 12 11 23 23 H 0.96994 * 120.00635 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.08256 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.91300 * 179.97438 * 11 10 9 26 26 H 0.97008 * 120.00200 * 0.02562 * 13 12 11 27 27 H 1.09000 * 109.46486 * 59.99971 * 14 13 12 28 28 H 1.09004 * 109.46920 * 300.00942 * 14 13 12 29 29 H 1.09004 * 112.84870 * 43.80935 * 15 14 13 30 30 H 1.08997 * 113.61304 * 254.53389 * 16 15 14 31 31 H 1.08997 * 113.61257 * 25.34563 * 16 15 14 32 32 H 1.09003 * 113.61146 * 334.56616 * 20 15 14 33 33 H 1.08994 * 113.61478 * 105.38622 * 20 15 14 34 34 H 1.07998 * 119.91478 * 179.72310 * 21 12 11 35 35 H 1.07997 * 120.08263 * 180.22792 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6964 -1.2126 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0490 -1.2342 0.2877 9 6 1.3542 -2.4037 -0.3777 10 6 1.8267 -3.6473 0.0860 11 6 1.1901 -4.7951 -0.2828 12 6 0.0734 -4.7403 -1.1180 13 7 -0.5696 -5.9135 -1.4899 14 6 -1.7425 -5.8600 -2.3661 15 6 -2.2549 -7.2792 -2.6196 16 6 -3.5601 -7.3270 -3.4316 17 6 -2.9664 -8.5377 -4.1708 18 9 -3.2487 -9.7627 -3.5570 19 9 -3.2341 -8.5423 -5.5440 20 6 -1.5791 -7.9741 -3.8134 21 6 -0.3968 -3.5123 -1.5859 22 6 0.2266 -2.3560 -1.2209 23 1 -0.4851 0.8399 0.0004 24 1 2.6911 -3.6913 0.7321 25 1 1.5515 -5.7491 0.0716 26 1 -0.2425 -6.7685 -1.1690 27 1 -1.4668 -5.3988 -3.3144 28 1 -2.5255 -5.2702 -1.8893 29 1 -2.2805 -7.8877 -1.7157 30 1 -4.4382 -7.5685 -2.8328 31 1 -3.7095 -6.4560 -4.0696 32 1 -1.1862 -7.2807 -4.5571 33 1 -0.8569 -8.7370 -3.5229 34 1 -1.2589 -3.4777 -2.2355 35 1 -0.1406 -1.4062 -1.5807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383525860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:36 Heat of formation + Delta-G solvation = -62.113565 kcal Electronic energy + Delta-G solvation = -19231.219828 eV Core-core repulsion = 15864.902092 eV Total energy + Delta-G solvation = -3366.317736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.98915 -47.32919 -38.81401 -37.62435 -34.72986 -32.84230 -29.49178 -29.26268 -27.00622 -26.46208 -24.13392 -22.80010 -21.09995 -20.07169 -19.93651 -17.62657 -17.21856 -16.80875 -16.45817 -15.91930 -15.54876 -14.95063 -14.52860 -14.19790 -13.85683 -13.65571 -13.57793 -13.26803 -12.82392 -12.66438 -12.59115 -12.03702 -11.81014 -11.69414 -11.43798 -11.05377 -11.00754 -11.00384 -10.75816 -10.62824 -10.46325 -9.72285 -9.30354 -9.23663 -8.55506 -7.51309 -6.65636 -6.41581 -4.04956 2.91956 3.08478 3.13630 3.16872 3.27425 3.34758 3.54774 3.94430 4.04577 4.10084 4.15035 4.57231 4.75549 5.11870 5.16299 5.20819 5.27278 5.37515 5.47840 5.77105 5.80938 5.97078 6.11324 6.25016 6.30184 6.90113 6.92054 7.18600 7.34374 7.52900 7.67123 7.82085 8.13582 8.26815 8.46820 8.67208 8.77626 9.04718 9.13498 10.36145 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045600 B = 0.003263 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.885361 B = 8580.176987 C = 8909.648517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.076 3.924 10 C -0.187 4.187 11 C -0.158 4.158 12 C 0.089 3.911 13 N -0.762 5.762 14 C 0.152 3.848 15 C -0.114 4.114 16 C -0.156 4.156 17 C 0.250 3.750 18 F -0.182 7.182 19 F -0.193 7.193 20 C -0.157 4.157 21 C -0.163 4.163 22 C -0.125 4.125 23 H 0.277 0.723 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.384 0.616 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 -11.616 -6.429 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.073 3.927 10 C -0.208 4.208 11 C -0.180 4.180 12 C -0.008 4.008 13 N -0.398 5.398 14 C 0.027 3.973 15 C -0.133 4.133 16 C -0.195 4.195 17 C 0.213 3.787 18 F -0.163 7.163 19 F -0.174 7.174 20 C -0.195 4.195 21 C -0.185 4.185 22 C -0.145 4.145 23 H 0.088 0.912 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.217 0.783 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.346 -11.375 -6.546 14.578 hybrid contribution 0.321 0.249 0.095 0.418 sum -6.025 -11.126 -6.450 14.202 Atomic orbital electron populations 1.69839 1.07368 1.28751 1.37497 1.25790 0.94653 1.00880 0.92681 0.86460 0.80140 0.80821 0.79750 1.19079 1.20576 1.19265 1.19350 0.97927 0.91413 1.41232 0.90962 1.17495 0.92393 0.91976 0.90875 1.20546 1.02724 0.92621 1.04880 1.19805 0.97864 0.97058 1.03239 1.17325 0.95848 0.85592 1.02013 1.43801 1.32797 1.05918 1.57270 1.20902 0.88904 0.93006 0.94510 1.22614 0.94668 0.98520 0.97449 1.24079 0.99453 0.96871 0.99059 1.22232 0.99508 0.82073 0.74857 1.93008 1.94721 1.46418 1.82162 1.93005 1.95096 1.96730 1.32562 1.24228 0.94763 1.01161 0.99369 1.20086 1.01630 0.91939 1.04869 1.20932 0.98246 0.96441 0.98903 0.91250 0.89056 0.89608 0.78341 0.92984 0.92805 0.87615 0.88730 0.86666 0.86745 0.88916 0.89440 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.28 10.97 55.54 0.61 -20.67 16 2 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.10 29.60 -169.99 -5.03 14.07 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.47 -12.66 9.03 -37.87 -0.34 -13.00 16 8 H 0.07 1.88 7.91 -52.49 -0.41 1.47 16 9 C 0.08 2.03 5.57 -106.79 -0.60 1.43 16 10 C -0.19 -4.60 9.74 -39.27 -0.38 -4.98 16 11 C -0.16 -3.47 9.82 -39.77 -0.39 -3.86 16 12 C 0.09 1.88 6.67 -83.69 -0.56 1.32 16 13 N -0.76 -12.34 5.70 -58.50 -0.33 -12.67 16 14 C 0.15 2.00 4.73 -4.04 -0.02 1.98 16 15 C -0.11 -1.12 3.74 -89.81 -0.34 -1.46 16 16 C -0.16 -1.36 7.42 -25.92 -0.19 -1.56 16 17 C 0.25 2.53 3.28 -25.83 -0.08 2.45 16 18 F -0.18 -2.08 17.39 2.25 0.04 -2.04 16 19 F -0.19 -2.23 17.41 2.25 0.04 -2.19 16 20 C -0.16 -1.48 7.43 -25.83 -0.19 -1.67 16 21 C -0.16 -3.73 9.23 -39.77 -0.37 -4.10 16 22 C -0.13 -3.24 8.64 -39.26 -0.34 -3.58 16 23 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 24 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 25 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 26 H 0.38 5.49 8.47 -40.82 -0.35 5.15 16 27 H 0.05 0.70 7.61 -51.93 -0.40 0.31 16 28 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.11 1.05 7.90 -51.93 -0.41 0.64 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.80 6.68 -52.49 -0.35 1.45 16 35 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -28.28 302.41 -8.33 -36.61 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.32 Total: 7.52 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -3.89 Total: -25.19 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.28 Total: -33.34 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.08 Total: -4.23 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.28 -8.33 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383525860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.502 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds