Wall clock time and date at job start Mon Mar 30 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35938 * 119.70695 * 2 1 4 4 C 1.41642 * 118.84318 * 180.27745 * 3 2 1 5 5 N 1.31555 * 120.86055 * 179.72714 * 4 3 2 6 6 N 1.38234 * 118.27598 * 359.49760 * 4 3 2 7 7 H 0.97004 * 120.36513 * 180.24470 * 6 4 3 8 8 C 1.36485 * 119.26636 * 0.50430 * 6 4 3 9 9 S 1.76208 * 119.43125 * 179.71756 * 8 6 4 10 10 C 1.80999 * 99.99874 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.47066 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.47352 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47352 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47101 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99869 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00382 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99873 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.47140 * 90.00546 * 18 16 14 20 20 H 1.48494 * 109.47290 * 210.00148 * 18 16 14 21 21 H 1.48505 * 109.47473 * 330.00745 * 18 16 14 22 22 N 1.31667 * 121.13365 * 359.74085 * 8 6 4 23 23 H 1.09003 * 109.47149 * 90.00553 * 1 2 3 24 24 H 1.09000 * 109.46651 * 210.00046 * 1 2 3 25 25 H 1.08996 * 109.47374 * 330.00237 * 1 2 3 26 26 H 1.08002 * 120.57556 * 359.97438 * 3 2 1 27 27 H 0.97000 * 120.00231 * 179.97438 * 5 4 3 28 28 H 1.09007 * 109.47078 * 299.99897 * 10 9 8 29 29 H 1.08999 * 109.47379 * 59.99895 * 10 9 8 30 30 H 1.09003 * 109.47069 * 299.99297 * 11 10 9 31 31 H 1.08996 * 109.47490 * 60.00081 * 11 10 9 32 32 H 1.09007 * 109.46742 * 299.99619 * 12 11 10 33 33 H 1.08999 * 109.47430 * 59.99442 * 12 11 10 34 34 H 1.09003 * 109.47069 * 299.99060 * 13 12 11 35 35 H 1.08999 * 109.47309 * 59.99368 * 13 12 11 36 36 H 0.96994 * 120.00514 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1807 1.1807 0.0000 4 6 3.5969 1.1594 -0.0060 5 7 4.2887 2.2784 -0.0116 6 7 4.2334 -0.0677 -0.0010 7 1 5.2021 -0.1177 -0.0013 8 6 3.4837 -1.2082 -0.0009 9 16 4.2904 -2.7748 -0.0021 10 6 2.8497 -3.8703 -0.0024 11 6 3.3168 -5.3272 -0.0027 12 6 2.0989 -6.2533 -0.0036 13 6 2.5660 -7.7102 -0.0046 14 6 1.3664 -8.6223 -0.0048 15 1 0.3704 -8.2046 -0.0039 16 6 1.5404 -9.9901 -0.0062 17 7 2.7531 -10.4988 -0.0068 18 14 0.0534 -11.1207 -0.0058 19 1 -0.3419 -11.4192 -1.4059 20 1 0.3939 -12.3861 0.6928 21 1 -1.0740 -10.4558 0.6958 22 7 2.1679 -1.1580 -0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6453 2.1187 -0.0004 27 1 5.2582 2.2492 -0.0153 28 1 2.2496 -3.6817 0.8880 29 1 2.2492 -3.6807 -0.8920 30 1 3.9169 -5.5161 -0.8928 31 1 3.9169 -5.5165 0.8872 32 1 1.4983 -6.0646 0.8863 33 1 1.4989 -6.0639 -0.8937 34 1 3.1662 -7.8987 -0.8947 35 1 3.1661 -7.8999 0.8853 36 1 2.8756 -11.4609 -0.0074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385218212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:38 Heat of formation + Delta-G solvation = 29.018176 kcal Electronic energy + Delta-G solvation = -16835.125460 eV Core-core repulsion = 14058.892630 eV Total energy + Delta-G solvation = -2776.232830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00040 -36.01040 -35.31770 -34.12626 -32.72796 -30.80618 -29.53162 -28.36487 -25.52104 -24.67652 -22.45002 -21.97202 -20.22480 -19.01051 -18.46497 -17.51089 -16.24469 -15.76822 -15.61954 -15.14113 -14.69206 -14.41690 -14.33648 -13.51572 -12.99340 -12.90117 -12.82652 -12.45755 -12.12574 -11.93808 -11.68895 -11.13685 -11.00918 -10.76804 -10.67340 -10.55506 -10.48141 -10.38146 -9.92250 -9.75968 -9.36391 -9.09091 -8.63541 -8.37628 -7.72358 -6.02759 -4.05280 0.37619 0.70636 1.60784 1.83554 2.68180 3.30280 3.30678 3.36798 3.39955 4.02796 4.28034 4.43724 4.91278 5.06124 5.07101 5.21945 5.25175 5.33336 5.36849 5.48014 5.63929 5.71487 5.86196 5.92471 6.02461 6.13724 6.27592 6.61646 6.65361 6.77551 7.04778 7.49966 7.63827 7.77067 7.96920 7.97778 8.39087 9.01945 9.59116 11.08574 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.003025 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.693936 B = 9255.495473 C = 9965.829296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.174 3.826 3 C -0.231 4.231 4 C 0.433 3.567 5 N -0.763 5.763 6 N -0.649 5.649 7 H 0.414 0.586 8 C 0.379 3.621 9 S -0.029 6.029 10 C -0.084 4.084 11 C -0.110 4.110 12 C -0.102 4.102 13 C 0.021 3.979 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 N -0.551 5.551 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.151 0.849 27 H 0.329 0.671 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 20.291 0.003 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.051 3.949 3 C -0.260 4.260 4 C 0.163 3.837 5 N -0.397 5.397 6 N -0.281 5.281 7 H 0.253 0.747 8 C 0.004 3.996 9 S 0.207 5.793 10 C -0.232 4.232 11 C -0.149 4.149 12 C -0.141 4.141 13 C -0.017 4.017 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 N -0.279 5.279 23 H 0.102 0.898 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.169 0.831 27 H 0.144 0.856 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.707 20.277 0.010 20.349 hybrid contribution -0.316 -0.318 -0.026 0.449 sum 1.390 19.959 -0.016 20.008 Atomic orbital electron populations 1.20744 0.87944 1.03916 1.03540 1.20825 0.97140 0.87483 0.89454 1.21135 0.89761 1.00043 1.15084 1.20386 0.94070 0.79406 0.89840 1.70721 1.13309 1.21590 1.34107 1.44773 1.10948 1.05611 1.66747 0.74749 1.25359 0.91180 0.92637 0.90384 1.86096 1.13697 0.90626 1.88878 1.23876 0.95571 0.96040 1.07763 1.21596 1.00699 0.89703 1.02920 1.21622 0.94784 0.96888 1.00848 1.19108 0.96661 0.88570 0.97318 1.21253 0.92996 0.91122 1.50585 0.92632 1.25027 0.95734 0.98401 0.95319 1.69955 1.20636 1.12079 1.50858 0.86602 0.83072 0.80257 0.78119 1.20660 1.21234 1.19849 1.68604 1.03382 1.28878 1.27068 0.89837 0.89968 0.90251 0.83141 0.85566 0.88126 0.88122 0.91311 0.91301 0.92924 0.92929 0.96537 0.96530 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.17 36.01 0.37 -0.44 16 2 C 0.17 1.88 6.76 -82.76 -0.56 1.32 16 3 C -0.23 -2.54 9.68 -39.11 -0.38 -2.92 16 4 C 0.43 5.02 7.84 -155.52 -1.22 3.80 16 5 N -0.76 -9.24 14.11 31.36 0.44 -8.80 16 6 N -0.65 -6.47 5.47 -11.84 -0.06 -6.53 16 7 H 0.41 3.10 8.81 -40.82 -0.36 2.74 16 8 C 0.38 4.24 7.97 -88.06 -0.70 3.54 16 9 S -0.03 -0.31 22.20 -107.50 -2.39 -2.70 16 10 C -0.08 -1.03 4.82 37.15 0.18 -0.85 16 11 C -0.11 -1.62 5.22 -26.73 -0.14 -1.76 16 12 C -0.10 -1.91 5.15 -26.73 -0.14 -2.05 16 13 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 14 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 N -0.55 -6.63 9.02 -9.37 -0.08 -6.71 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 26 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.33 3.35 8.89 -40.82 -0.36 2.98 16 28 H 0.10 1.24 8.12 -51.91 -0.42 0.82 16 29 H 0.10 1.24 8.12 -51.92 -0.42 0.82 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -31.04 323.35 -9.98 -41.02 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.33 Total: 0.57 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.14 Total: -12.20 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 1.03 Total: -47.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.39 Total: -2.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.04 -9.98 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385218212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.038 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds