Wall clock time and date at job start Mon Mar 30 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35938 * 119.70695 * 2 1 4 4 C 1.41642 * 118.84318 * 180.27745 * 3 2 1 5 5 N 1.31555 * 120.86055 * 179.72714 * 4 3 2 6 6 N 1.38234 * 118.27598 * 359.49760 * 4 3 2 7 7 H 0.97004 * 120.36513 * 180.24470 * 6 4 3 8 8 C 1.36485 * 119.26636 * 0.50430 * 6 4 3 9 9 S 1.76208 * 119.43125 * 179.71756 * 8 6 4 10 10 C 1.80999 * 99.99874 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.47066 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.47352 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47352 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47101 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99976 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99869 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00382 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99873 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.47140 * 90.00546 * 18 16 14 20 20 H 1.48494 * 109.47290 * 210.00148 * 18 16 14 21 21 H 1.48505 * 109.47473 * 330.00745 * 18 16 14 22 22 N 1.31667 * 121.13365 * 359.74085 * 8 6 4 23 23 H 1.09003 * 109.47149 * 90.00553 * 1 2 3 24 24 H 1.09000 * 109.46651 * 210.00046 * 1 2 3 25 25 H 1.08996 * 109.47374 * 330.00237 * 1 2 3 26 26 H 1.08002 * 120.57556 * 359.97438 * 3 2 1 27 27 H 0.97000 * 120.00231 * 179.97438 * 5 4 3 28 28 H 1.09007 * 109.47078 * 299.99897 * 10 9 8 29 29 H 1.08999 * 109.47379 * 59.99895 * 10 9 8 30 30 H 1.09003 * 109.47069 * 299.99297 * 11 10 9 31 31 H 1.08996 * 109.47490 * 60.00081 * 11 10 9 32 32 H 1.09007 * 109.46742 * 299.99619 * 12 11 10 33 33 H 1.08999 * 109.47430 * 59.99442 * 12 11 10 34 34 H 1.09003 * 109.47069 * 299.99060 * 13 12 11 35 35 H 1.08999 * 109.47309 * 59.99368 * 13 12 11 36 36 H 0.96994 * 120.00514 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1807 1.1807 0.0000 4 6 3.5969 1.1594 -0.0060 5 7 4.2887 2.2784 -0.0116 6 7 4.2334 -0.0677 -0.0010 7 1 5.2021 -0.1177 -0.0013 8 6 3.4837 -1.2082 -0.0009 9 16 4.2904 -2.7748 -0.0021 10 6 2.8497 -3.8703 -0.0024 11 6 3.3168 -5.3272 -0.0027 12 6 2.0989 -6.2533 -0.0036 13 6 2.5660 -7.7102 -0.0046 14 6 1.3664 -8.6223 -0.0048 15 1 0.3704 -8.2046 -0.0039 16 6 1.5404 -9.9901 -0.0062 17 7 2.7531 -10.4988 -0.0068 18 14 0.0534 -11.1207 -0.0058 19 1 -0.3419 -11.4192 -1.4059 20 1 0.3939 -12.3861 0.6928 21 1 -1.0740 -10.4558 0.6958 22 7 2.1679 -1.1580 -0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6453 2.1187 -0.0004 27 1 5.2582 2.2492 -0.0153 28 1 2.2496 -3.6817 0.8880 29 1 2.2492 -3.6807 -0.8920 30 1 3.9169 -5.5161 -0.8928 31 1 3.9169 -5.5165 0.8872 32 1 1.4983 -6.0646 0.8863 33 1 1.4989 -6.0639 -0.8937 34 1 3.1662 -7.8987 -0.8947 35 1 3.1661 -7.8999 0.8853 36 1 2.8756 -11.4609 -0.0074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385218212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:38 Heat of formation + Delta-G solvation = 11.311400 kcal Electronic energy + Delta-G solvation = -16835.893283 eV Core-core repulsion = 14058.892630 eV Total energy + Delta-G solvation = -2777.000653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.82862 -36.96323 -36.72542 -34.94571 -34.65652 -31.74980 -31.10612 -29.09717 -27.17146 -25.68219 -23.70190 -23.11203 -21.78957 -19.86318 -19.31148 -18.49053 -18.24756 -16.73641 -16.56634 -16.40413 -16.26664 -15.59852 -15.11143 -14.54248 -14.46771 -14.13562 -13.91720 -13.47642 -13.33685 -13.07561 -12.99614 -12.77185 -12.42801 -12.34956 -12.27907 -11.67465 -11.45386 -11.39352 -11.31727 -11.23151 -11.02718 -10.76387 -10.52223 -9.48686 -8.57557 -8.17607 -6.27981 -0.45580 -0.18132 0.74429 0.89190 1.42505 1.43120 1.54261 1.88143 2.43317 2.47474 3.16039 3.27669 3.49252 3.89741 3.99327 4.12758 4.39756 4.45503 4.56933 4.60016 4.75688 4.81116 4.83713 4.88458 5.04806 5.12378 5.25046 5.29053 5.30533 5.36362 5.57751 5.80854 5.88932 5.90752 6.28787 6.66656 6.90169 7.16619 7.41369 8.94114 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037490 B = 0.003025 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.693936 B = 9255.495473 C = 9965.829296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.169 3.831 3 C -0.243 4.243 4 C 0.426 3.574 5 N -0.783 5.783 6 N -0.640 5.640 7 H 0.425 0.575 8 C 0.371 3.629 9 S 0.002 5.998 10 C -0.081 4.081 11 C -0.100 4.100 12 C -0.091 4.091 13 C 0.021 3.979 14 C -0.542 4.542 15 H 0.061 0.939 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.262 1.262 22 N -0.567 5.567 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.161 0.839 27 H 0.336 0.664 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.056 0.944 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 21.138 -0.011 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.046 3.954 3 C -0.272 4.272 4 C 0.156 3.844 5 N -0.418 5.418 6 N -0.272 5.272 7 H 0.265 0.735 8 C -0.004 4.004 9 S 0.238 5.762 10 C -0.230 4.230 11 C -0.139 4.139 12 C -0.130 4.130 13 C -0.016 4.016 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.187 1.187 22 N -0.296 5.296 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.178 0.822 27 H 0.152 0.848 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.642 21.133 -0.004 21.143 hybrid contribution 0.063 -0.555 -0.024 0.559 sum 0.704 20.578 -0.028 20.590 Atomic orbital electron populations 1.20827 0.85979 1.04695 1.04375 1.21252 0.98479 0.87026 0.88674 1.21333 0.89718 1.00668 1.15456 1.20546 0.94501 0.79684 0.89653 1.70723 1.14045 1.22022 1.35059 1.44670 1.11528 1.04956 1.66079 0.73492 1.25453 0.91367 0.93024 0.90541 1.85966 1.11665 0.89725 1.88847 1.23620 0.96503 0.94834 1.08053 1.21354 0.98845 0.90766 1.02958 1.21391 0.96422 0.93958 1.01246 1.19042 0.95350 0.92279 0.94955 1.21753 0.94092 0.92042 1.50100 0.92064 1.25966 0.98764 1.00292 0.94917 1.70087 1.22944 1.12517 1.51955 0.85494 0.79453 0.77942 0.78454 1.19855 1.20952 1.18659 1.68630 1.03795 1.29699 1.27478 0.88839 0.90311 0.88333 0.82162 0.84800 0.87902 0.87896 0.91324 0.91313 0.92487 0.92475 0.98900 0.98893 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.17 71.24 0.72 -0.66 16 2 C 0.17 3.37 6.76 41.80 0.28 3.66 16 3 C -0.24 -5.00 9.68 22.58 0.22 -4.78 16 4 C 0.43 9.36 7.84 134.20 1.05 10.41 16 5 N -0.78 -18.16 14.11 -54.68 -0.77 -18.93 16 6 N -0.64 -11.84 5.47 -191.36 -1.05 -12.89 16 7 H 0.42 5.74 8.81 -92.71 -0.82 4.92 16 8 C 0.37 7.70 7.97 179.46 1.43 9.13 16 9 S 0.00 0.03 22.20 -56.49 -1.25 -1.22 16 10 C -0.08 -1.87 4.82 71.98 0.35 -1.52 16 11 C -0.10 -2.87 5.22 30.59 0.16 -2.71 16 12 C -0.09 -3.36 5.15 30.59 0.16 -3.21 16 13 C 0.02 1.06 4.97 29.85 0.15 1.21 16 14 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 17 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 18 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 N -0.57 -12.73 9.02 -183.55 -1.65 -14.39 16 23 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 26 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.34 6.53 8.89 -92.71 -0.82 5.71 16 28 H 0.10 2.35 8.12 -2.39 -0.02 2.33 16 29 H 0.10 2.35 8.12 -2.40 -0.02 2.33 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 34 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -66.09 323.35 2.25 -63.84 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.55 Total: 11.91 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 5.22 Total: -17.97 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -3.19 Total: -102.14 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.25 Total: -1.22 kcal Total: -66.09 2.25 -63.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385218212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.152 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds