Wall clock time and date at job start Mon Mar 30 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48504 * 109.46729 * 239.99600 * 3 2 1 5 5 H 1.48497 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47336 * 119.99872 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.46656 * 179.97438 * 14 13 12 16 16 C 1.38240 * 119.99061 * 269.72728 * 15 14 13 17 17 C 1.38208 * 120.01343 * 179.73182 * 16 15 14 18 18 C 1.38350 * 119.98647 * 0.53937 * 17 16 15 19 19 Cl 1.73604 * 120.01547 * 179.70763 * 18 17 16 20 20 C 1.38359 * 119.97697 * 359.73517 * 18 17 16 21 21 C 1.38211 * 119.98113 * 359.97438 * 20 18 17 22 22 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46666 * 60.00155 * 9 7 2 24 24 H 1.09000 * 109.47313 * 299.99994 * 9 7 2 25 25 H 1.08993 * 109.46885 * 60.00477 * 10 9 7 26 26 H 1.09000 * 109.47227 * 300.00302 * 10 9 7 27 27 H 1.08995 * 109.47786 * 59.99734 * 11 10 9 28 28 H 1.09008 * 109.46885 * 300.00227 * 11 10 9 29 29 H 1.09002 * 109.47142 * 60.00048 * 12 11 10 30 30 H 1.09000 * 109.46991 * 299.99792 * 12 11 10 31 31 H 1.00896 * 111.00309 * 56.04370 * 13 12 11 32 32 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 33 33 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 34 34 H 1.07995 * 119.98954 * 359.97438 * 16 15 14 35 35 H 1.07999 * 120.00733 * 180.27702 * 17 16 15 36 36 H 1.07992 * 120.01122 * 179.97438 * 20 18 17 37 37 H 1.07997 * 119.99581 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7399 -7.4222 0.0005 14 6 2.6644 -8.5638 0.0005 15 6 1.8763 -9.8484 0.0012 16 6 1.5202 -10.4400 1.1987 17 6 0.7926 -11.6151 1.1999 18 6 0.4303 -12.2052 0.0022 19 17 -0.4770 -13.6853 0.0028 20 6 0.7918 -11.6157 -1.1962 21 6 1.5142 -10.4374 -1.1960 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 0.8538 -5.0446 -0.8902 28 1 0.8532 -5.0450 0.8897 29 1 3.1005 -6.0923 0.8910 30 1 3.1017 -6.0922 -0.8890 31 1 1.1037 -7.4725 -0.7810 32 1 3.2923 -8.5229 -0.8894 33 1 3.2924 -8.5228 0.8906 34 1 1.8072 -9.9817 2.1336 35 1 0.5106 -12.0748 2.1356 36 1 0.5097 -12.0761 -2.1314 37 1 1.7969 -9.9773 -2.1313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385830121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:33 Heat of formation + Delta-G solvation = -11.338179 kcal Electronic energy + Delta-G solvation = -16501.847355 eV Core-core repulsion = 13689.528085 eV Total energy + Delta-G solvation = -2812.319270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74595 -37.09245 -36.43801 -34.29241 -32.49640 -31.37977 -31.01769 -28.23593 -25.54773 -23.75435 -23.15146 -21.56171 -21.33456 -19.98294 -17.45027 -16.37216 -16.15095 -15.71992 -15.31276 -14.82160 -14.49425 -14.35075 -13.88555 -13.71877 -13.63168 -12.96133 -12.43720 -12.34831 -11.88768 -11.75869 -11.65304 -11.50416 -11.26150 -11.11635 -10.98067 -10.55708 -10.52435 -10.42732 -9.62724 -9.35042 -9.27113 -9.04922 -8.90393 -8.44270 -8.31663 -5.96911 -3.99298 0.80285 0.98945 1.82258 3.27477 3.34501 3.38797 3.41244 4.24489 4.43609 4.48302 4.55441 4.60915 4.92879 5.01273 5.26302 5.28237 5.38009 5.39689 5.50932 5.52691 5.65237 5.87914 5.89008 5.91465 6.13782 6.21675 6.25661 6.47830 6.50492 6.81797 6.93022 6.99738 7.21454 7.33150 7.71496 7.87536 8.04025 8.46635 9.08025 9.64413 11.14379 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.055085 B = 0.002215 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.187925 B =12635.205253 C =12815.413160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.686 5.686 14 C 0.094 3.906 15 C -0.074 4.074 16 C -0.085 4.085 17 C -0.112 4.112 18 C -0.037 4.037 19 Cl -0.076 7.076 20 C -0.111 4.111 21 C -0.102 4.102 22 H 0.261 0.739 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.341 0.659 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -26.402 -0.705 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.317 5.317 14 C -0.034 4.034 15 C -0.074 4.074 16 C -0.104 4.104 17 C -0.130 4.130 18 C -0.063 4.063 19 Cl -0.047 7.047 20 C -0.130 4.130 21 C -0.121 4.121 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.159 0.841 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.653 -26.407 -0.019 26.540 hybrid contribution 0.612 0.828 -0.944 1.397 sum 3.265 -25.579 -0.963 25.805 Atomic orbital electron populations 1.69960 1.06041 1.26639 1.50908 1.25040 0.94861 0.99240 0.95434 0.86663 0.79578 0.83202 0.78575 1.20297 1.21305 1.20255 1.21249 0.92969 0.91226 1.50475 0.92828 1.19089 0.94025 0.91328 0.97163 1.21590 0.99089 0.93936 1.00083 1.21639 0.97867 0.93782 1.02071 1.22112 0.96283 0.88288 1.00268 1.60573 1.19564 1.01263 1.50275 1.20914 0.93462 0.87425 1.01629 1.19978 0.98237 0.96135 0.93063 1.21045 0.96778 0.94145 0.98392 1.21079 0.98887 0.96171 0.96887 1.20952 0.99799 0.90256 0.95342 1.98371 1.73388 1.34011 1.98975 1.21015 0.98995 0.96096 0.96880 1.21054 0.97930 0.94992 0.98142 0.92985 0.96749 0.96595 0.93415 0.93675 0.92724 0.91601 0.91119 0.95421 0.84096 0.94228 0.89941 0.84788 0.84940 0.85018 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.12 -1.94 5.47 -26.73 -0.15 -2.09 16 12 C 0.06 0.79 5.69 -3.82 -0.02 0.77 16 13 N -0.69 -8.11 6.49 -115.05 -0.75 -8.85 16 14 C 0.09 0.91 5.81 -4.97 -0.03 0.88 16 15 C -0.07 -0.68 5.39 -104.61 -0.56 -1.24 16 16 C -0.08 -0.76 9.70 -39.59 -0.38 -1.15 16 17 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 18 C -0.04 -0.33 6.32 -39.50 -0.25 -0.58 16 19 Cl -0.08 -0.66 28.96 -51.86 -1.50 -2.16 16 20 C -0.11 -0.95 9.83 -39.55 -0.39 -1.33 16 21 C -0.10 -0.87 9.70 -39.59 -0.38 -1.26 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.34 3.88 8.72 -39.29 -0.34 3.54 16 32 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -30.48 330.34 -10.60 -41.08 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.80 Total: -2.18 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -3.24 Total: -23.11 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.01 Total: -35.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.48 -10.60 -41.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385830121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.740 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds