Wall clock time and date at job start Mon Mar 30 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48504 * 109.46729 * 239.99600 * 3 2 1 5 5 H 1.48497 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47336 * 119.99872 * 3 2 1 7 7 C 1.37873 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00436 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47077 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99573 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.46656 * 179.97438 * 14 13 12 16 16 C 1.38240 * 119.99061 * 269.72728 * 15 14 13 17 17 C 1.38208 * 120.01343 * 179.73182 * 16 15 14 18 18 C 1.38350 * 119.98647 * 0.53937 * 17 16 15 19 19 Cl 1.73604 * 120.01547 * 179.70763 * 18 17 16 20 20 C 1.38359 * 119.97697 * 359.73517 * 18 17 16 21 21 C 1.38211 * 119.98113 * 359.97438 * 20 18 17 22 22 H 0.97006 * 120.00146 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46666 * 60.00155 * 9 7 2 24 24 H 1.09000 * 109.47313 * 299.99994 * 9 7 2 25 25 H 1.08993 * 109.46885 * 60.00477 * 10 9 7 26 26 H 1.09000 * 109.47227 * 300.00302 * 10 9 7 27 27 H 1.08995 * 109.47786 * 59.99734 * 11 10 9 28 28 H 1.09008 * 109.46885 * 300.00227 * 11 10 9 29 29 H 1.09002 * 109.47142 * 60.00048 * 12 11 10 30 30 H 1.09000 * 109.46991 * 299.99792 * 12 11 10 31 31 H 1.00896 * 111.00309 * 56.04370 * 13 12 11 32 32 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 33 33 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 34 34 H 1.07995 * 119.98954 * 359.97438 * 16 15 14 35 35 H 1.07999 * 120.00733 * 180.27702 * 17 16 15 36 36 H 1.07992 * 120.01122 * 179.97438 * 20 18 17 37 37 H 1.07997 * 119.99581 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 7 1.7399 -7.4222 0.0005 14 6 2.6644 -8.5638 0.0005 15 6 1.8763 -9.8484 0.0012 16 6 1.5202 -10.4400 1.1987 17 6 0.7926 -11.6151 1.1999 18 6 0.4303 -12.2052 0.0022 19 17 -0.4770 -13.6853 0.0028 20 6 0.7918 -11.6157 -1.1962 21 6 1.5142 -10.4374 -1.1960 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 0.8538 -5.0446 -0.8902 28 1 0.8532 -5.0450 0.8897 29 1 3.1005 -6.0923 0.8910 30 1 3.1017 -6.0922 -0.8890 31 1 1.1037 -7.4725 -0.7810 32 1 3.2923 -8.5229 -0.8894 33 1 3.2924 -8.5228 0.8906 34 1 1.8072 -9.9817 2.1336 35 1 0.5106 -12.0748 2.1356 36 1 0.5097 -12.0761 -2.1314 37 1 1.7969 -9.9773 -2.1313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385830121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:32 Heat of formation + Delta-G solvation = -27.957577 kcal Electronic energy + Delta-G solvation = -16502.568027 eV Core-core repulsion = 13689.528085 eV Total energy + Delta-G solvation = -2813.039941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40918 -37.99027 -37.33675 -35.91887 -34.21887 -32.17748 -32.01592 -29.76527 -26.89251 -25.16902 -23.79987 -22.84738 -22.27981 -21.59562 -18.44985 -18.08694 -17.17632 -16.56432 -16.40323 -16.29810 -15.72444 -15.48729 -14.80932 -14.45184 -14.42673 -14.34626 -13.93254 -13.62579 -13.47660 -12.97298 -12.81541 -12.49208 -12.45601 -12.27516 -12.16361 -12.11971 -12.05880 -11.75626 -11.35364 -11.29843 -10.99367 -10.54203 -9.99402 -9.65216 -9.32081 -8.19011 -6.30617 0.12466 0.34637 1.15701 1.40083 1.43549 1.51510 2.41536 2.59206 3.13529 3.36682 3.79510 3.85504 3.97310 4.14743 4.19689 4.32175 4.38073 4.56173 4.61514 4.67152 4.70595 4.82090 4.86447 4.95175 5.02788 5.22482 5.26437 5.27244 5.29077 5.37861 5.56389 5.59086 5.79438 5.83351 5.88066 6.06184 6.26592 6.42890 6.87133 7.38646 8.92637 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.055085 B = 0.002215 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.187925 B =12635.205253 C =12815.413160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.071 3.929 13 N -0.693 5.693 14 C 0.098 3.902 15 C -0.083 4.083 16 C -0.093 4.093 17 C -0.118 4.118 18 C -0.048 4.048 19 Cl -0.076 7.076 20 C -0.117 4.117 21 C -0.104 4.104 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.012 1.012 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.344 0.656 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -26.762 -0.986 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.057 4.057 13 N -0.325 5.325 14 C -0.030 4.030 15 C -0.084 4.084 16 C -0.111 4.111 17 C -0.137 4.137 18 C -0.074 4.074 19 Cl -0.047 7.047 20 C -0.135 4.135 21 C -0.123 4.123 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.006 0.994 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.162 0.838 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.082 -26.790 -0.300 27.100 hybrid contribution 0.119 0.890 -0.856 1.240 sum 4.201 -25.900 -1.156 26.263 Atomic orbital electron populations 1.70103 1.07871 1.27818 1.51733 1.26044 0.95821 1.03547 0.94794 0.85478 0.78245 0.77945 0.79244 1.19066 1.20883 1.19092 1.21726 0.93599 0.92509 1.50447 0.92091 1.19031 0.94561 0.93390 0.94547 1.21396 0.97946 0.93606 1.00550 1.21464 0.98105 0.93450 1.01401 1.21866 0.95209 0.87729 1.00924 1.60505 1.20089 1.01223 1.50648 1.20911 0.93160 0.86561 1.02351 1.20026 0.98682 0.96168 0.93481 1.21210 0.96827 0.94315 0.98790 1.21255 0.98811 0.96214 0.97404 1.21128 1.00050 0.90455 0.95799 1.98368 1.73394 1.33995 1.98987 1.21234 0.98801 0.96161 0.97333 1.21256 0.97520 0.94908 0.98600 0.92796 0.99286 0.99361 0.92980 0.92986 0.92943 0.92806 0.90749 0.94466 0.83838 0.93119 0.89548 0.84061 0.83828 0.83670 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.18 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.94 5.15 30.59 0.16 -3.78 16 11 C -0.11 -3.51 5.47 30.59 0.17 -3.34 16 12 C 0.07 1.79 5.69 86.30 0.49 2.28 16 13 N -0.69 -15.18 6.49 -517.91 -3.36 -18.55 16 14 C 0.10 1.69 5.81 85.56 0.50 2.18 16 15 C -0.08 -1.40 5.39 -19.86 -0.11 -1.51 16 16 C -0.09 -1.55 9.70 22.26 0.22 -1.33 16 17 C -0.12 -1.94 9.83 22.29 0.22 -1.72 16 18 C -0.05 -0.81 6.32 22.33 0.14 -0.67 16 19 Cl -0.08 -1.25 28.96 -2.72 -0.08 -1.33 16 20 C -0.12 -1.82 9.83 22.29 0.22 -1.60 16 21 C -0.10 -1.59 9.70 22.27 0.22 -1.37 16 22 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.34 7.26 8.72 -89.70 -0.78 6.48 16 32 H 0.05 0.77 8.09 -2.39 -0.02 0.75 16 33 H 0.09 1.42 8.08 -2.38 -0.02 1.40 16 34 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -65.09 330.34 2.19 -62.90 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.26 Total: 8.64 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 3.06 Total: -40.64 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -3.08 Total: -76.22 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -65.09 2.19 -62.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385830121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.946 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds