Wall clock time and date at job start Mon Mar 30 2020 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47293 * 2 1 4 4 C 1.38263 * 119.99222 * 265.00436 * 3 2 1 5 5 C 1.38224 * 120.02332 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.01528 * 359.97438 * 5 4 3 7 7 C 1.38335 * 119.98682 * 359.97438 * 6 5 4 8 8 Cl 1.73599 * 120.01202 * 180.02562 * 7 6 5 9 9 C 1.38198 * 119.99438 * 85.27215 * 3 2 1 10 10 C 1.50699 * 120.00565 * 359.97438 * 9 3 2 11 11 N 1.46905 * 109.47253 * 270.25280 * 10 9 3 12 12 C 1.46897 * 110.99971 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47134 * 324.99496 * 12 11 10 14 14 C 1.52993 * 109.46955 * 85.00118 * 12 11 10 15 15 C 1.50703 * 109.46709 * 204.99969 * 12 11 10 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99718 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00205 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99804 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47027 * 89.99896 * 19 17 15 21 21 H 1.48504 * 109.46871 * 209.99624 * 19 17 15 22 22 H 1.48491 * 109.47302 * 329.99338 * 19 17 15 23 23 H 1.09006 * 109.46848 * 59.99949 * 1 2 3 24 24 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47070 * 300.00253 * 1 2 3 26 26 H 1.09003 * 109.47227 * 240.00274 * 2 1 3 27 27 H 1.09000 * 109.47153 * 119.99795 * 2 1 3 28 28 H 1.07991 * 119.99092 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.99298 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.00764 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47080 * 30.24939 * 10 9 3 32 32 H 1.09001 * 109.47566 * 150.25055 * 10 9 3 33 33 H 1.00896 * 110.99663 * 303.95407 * 11 10 9 34 34 H 1.09002 * 109.47707 * 59.99729 * 14 12 11 35 35 H 1.09005 * 109.47361 * 179.97438 * 14 12 11 36 36 H 1.08998 * 109.47501 * 299.99608 * 14 12 11 37 37 H 0.97001 * 120.00448 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0377 -1.1929 5 6 2.8225 3.3406 -1.1936 6 6 2.9549 4.0279 -0.0016 7 6 2.6252 3.4116 1.1922 8 17 2.7907 4.2743 2.6895 9 6 2.1697 2.1050 1.1928 10 6 1.8165 1.4307 2.4934 11 7 0.3991 1.6671 2.7986 12 6 0.0180 1.0224 4.0623 13 1 0.5649 0.0859 4.1718 14 6 0.3565 1.9504 5.2306 15 6 -1.4626 0.7417 4.0564 16 1 -2.0606 1.0145 3.1994 17 6 -2.0538 0.1365 5.1451 18 7 -1.3256 -0.1962 6.1884 19 14 -3.8890 -0.2121 5.1375 20 1 -4.1342 -1.5614 4.5677 21 1 -4.4085 -0.1600 6.5277 22 1 -4.5832 0.8079 4.3112 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2574 1.5013 -2.1245 29 1 3.0795 3.8219 -2.1257 30 1 3.3150 5.0461 -0.0023 31 1 1.9958 0.3590 2.4074 32 1 2.4335 1.8392 3.2938 33 1 0.1937 2.6547 2.8198 34 1 -0.1904 2.8869 5.1211 35 1 0.0734 1.4722 6.1683 36 1 1.4274 2.1535 5.2349 37 1 -1.7415 -0.6223 6.9542 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390589337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:06 Heat of formation + Delta-G solvation = 4.287388 kcal Electronic energy + Delta-G solvation = -18384.666218 eV Core-core repulsion = 15573.024524 eV Total energy + Delta-G solvation = -2811.641694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66156 -36.34460 -35.99336 -33.87737 -32.69684 -30.94663 -29.22214 -27.96804 -25.15711 -24.41619 -23.60271 -21.59476 -20.29198 -20.10187 -16.75552 -16.12839 -16.02922 -15.12837 -14.76697 -14.28915 -13.80274 -13.68601 -13.30285 -13.10401 -12.77588 -12.65018 -12.27119 -11.78766 -11.57257 -11.49376 -11.37464 -11.09054 -10.92276 -10.88749 -10.67478 -10.52229 -10.45260 -10.20424 -10.08768 -9.84428 -8.98691 -8.53955 -8.50663 -8.33447 -7.19007 -5.95876 -3.98922 1.28561 1.39299 2.32641 3.34232 3.40581 3.44711 3.71581 4.46554 4.82930 4.87297 5.03244 5.25638 5.35892 5.36051 5.49807 5.60191 5.76095 5.80052 5.86666 6.01279 6.08187 6.27420 6.33428 6.39105 6.43713 6.51555 6.74334 6.79744 6.90843 6.95963 7.09271 7.15983 7.38386 7.77852 7.90608 8.29336 8.54379 8.62865 9.08134 9.66256 11.11046 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.005932 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.870434 B = 4719.247106 C = 5594.510140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.080 4.080 3 C -0.048 4.048 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.122 4.122 7 C -0.030 4.030 8 Cl -0.070 7.070 9 C -0.059 4.059 10 C 0.088 3.912 11 N -0.670 5.670 12 C 0.213 3.787 13 H 0.033 0.967 14 C -0.168 4.168 15 C -0.492 4.492 16 H 0.062 0.938 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.896 3.104 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.275 1.275 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.327 0.673 34 H 0.027 0.973 35 H 0.087 0.913 36 H 0.005 0.995 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 5.197 -12.474 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.117 4.117 3 C -0.049 4.049 4 C -0.138 4.138 5 C -0.133 4.133 6 C -0.141 4.141 7 C -0.057 4.057 8 Cl -0.041 7.041 9 C -0.060 4.060 10 C -0.041 4.041 11 N -0.299 5.299 12 C 0.106 3.894 13 H 0.051 0.949 14 C -0.227 4.227 15 C -0.531 4.531 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.724 3.276 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.200 1.200 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.143 0.857 34 H 0.046 0.954 35 H 0.106 0.894 36 H 0.024 0.976 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.801 4.646 -12.526 15.998 hybrid contribution -0.462 0.588 0.852 1.133 sum 8.339 5.233 -11.674 15.271 Atomic orbital electron populations 1.21900 0.93364 1.01928 1.04161 1.20544 0.97641 0.91411 1.02084 1.19781 0.96656 0.96920 0.91542 1.21096 0.99849 0.95131 0.97677 1.20973 1.00342 0.94752 0.97254 1.20927 1.01909 1.00274 0.90958 1.20883 1.04297 0.93210 0.87338 1.98368 1.96329 1.76289 1.33141 1.19802 0.97516 0.92015 0.96672 1.20983 0.92407 0.99718 0.91024 1.60896 1.13475 1.17143 1.38418 1.19173 0.96038 0.92367 0.81852 0.94901 1.22408 0.95517 0.99480 1.05293 1.21131 0.92624 1.37831 1.01474 0.91950 1.24932 0.98015 0.95978 0.95546 1.69885 1.35268 1.42352 1.06211 0.86538 0.85526 0.78592 0.76947 1.20813 1.21507 1.19980 0.93995 0.93100 0.87958 0.92109 0.90523 0.85869 0.85668 0.85531 0.90325 0.94582 0.85688 0.95428 0.89388 0.97573 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.89 37.16 0.37 -2.02 16 2 C -0.08 -1.10 5.57 -27.88 -0.16 -1.25 16 3 C -0.05 -0.69 5.13 -104.63 -0.54 -1.22 16 4 C -0.12 -1.44 9.68 -39.58 -0.38 -1.83 16 5 C -0.11 -1.29 10.05 -39.59 -0.40 -1.69 16 6 C -0.12 -1.53 9.83 -39.55 -0.39 -1.92 16 7 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 8 Cl -0.07 -1.05 27.30 -51.86 -1.42 -2.47 16 9 C -0.06 -0.93 5.40 -104.59 -0.56 -1.49 16 10 C 0.09 1.58 4.74 -4.97 -0.02 1.55 16 11 N -0.67 -13.80 4.60 -109.22 -0.50 -14.30 16 12 C 0.21 5.22 2.57 -68.87 -0.18 5.05 16 13 H 0.03 0.88 7.80 -51.93 -0.40 0.48 16 14 C -0.17 -4.04 8.94 37.15 0.33 -3.71 16 15 C -0.49 -13.31 8.84 -34.44 -0.30 -13.62 16 16 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 18 N -0.90 -25.50 11.32 55.43 0.63 -24.88 16 19 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 1.90 6.39 -51.93 -0.33 1.57 16 26 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 27 H 0.08 1.12 6.15 -51.93 -0.32 0.80 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.08 1.42 5.94 -51.93 -0.31 1.11 16 32 H 0.04 0.67 6.20 -51.93 -0.32 0.35 16 33 H 0.33 6.77 8.46 -39.29 -0.33 6.44 16 34 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 36 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -27.63 313.58 -9.38 -37.01 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.22 Total: 4.93 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.58 Total: -21.41 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.12 Total: -39.18 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.42 Total: -2.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.63 -9.38 -37.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390589337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.297 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds