Wall clock time and date at job start Mon Mar 30 2020 07:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47293 * 2 1 4 4 C 1.38263 * 119.99222 * 265.00436 * 3 2 1 5 5 C 1.38224 * 120.02332 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.01528 * 359.97438 * 5 4 3 7 7 C 1.38335 * 119.98682 * 359.97438 * 6 5 4 8 8 Cl 1.73599 * 120.01202 * 180.02562 * 7 6 5 9 9 C 1.38198 * 119.99438 * 85.27215 * 3 2 1 10 10 C 1.50699 * 120.00565 * 359.97438 * 9 3 2 11 11 N 1.46905 * 109.47253 * 270.25280 * 10 9 3 12 12 C 1.46897 * 110.99971 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47134 * 324.99496 * 12 11 10 14 14 C 1.52993 * 109.46955 * 85.00118 * 12 11 10 15 15 C 1.50703 * 109.46709 * 204.99969 * 12 11 10 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99718 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00205 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99804 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.47027 * 89.99896 * 19 17 15 21 21 H 1.48504 * 109.46871 * 209.99624 * 19 17 15 22 22 H 1.48491 * 109.47302 * 329.99338 * 19 17 15 23 23 H 1.09006 * 109.46848 * 59.99949 * 1 2 3 24 24 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47070 * 300.00253 * 1 2 3 26 26 H 1.09003 * 109.47227 * 240.00274 * 2 1 3 27 27 H 1.09000 * 109.47153 * 119.99795 * 2 1 3 28 28 H 1.07991 * 119.99092 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.99298 * 179.97438 * 5 4 3 30 30 H 1.08002 * 120.00764 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47080 * 30.24939 * 10 9 3 32 32 H 1.09001 * 109.47566 * 150.25055 * 10 9 3 33 33 H 1.00896 * 110.99663 * 303.95407 * 11 10 9 34 34 H 1.09002 * 109.47707 * 59.99729 * 14 12 11 35 35 H 1.09005 * 109.47361 * 179.97438 * 14 12 11 36 36 H 1.08998 * 109.47501 * 299.99608 * 14 12 11 37 37 H 0.97001 * 120.00448 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0377 -1.1929 5 6 2.8225 3.3406 -1.1936 6 6 2.9549 4.0279 -0.0016 7 6 2.6252 3.4116 1.1922 8 17 2.7907 4.2743 2.6895 9 6 2.1697 2.1050 1.1928 10 6 1.8165 1.4307 2.4934 11 7 0.3991 1.6671 2.7986 12 6 0.0180 1.0224 4.0623 13 1 0.5649 0.0859 4.1718 14 6 0.3565 1.9504 5.2306 15 6 -1.4626 0.7417 4.0564 16 1 -2.0606 1.0145 3.1994 17 6 -2.0538 0.1365 5.1451 18 7 -1.3256 -0.1962 6.1884 19 14 -3.8890 -0.2121 5.1375 20 1 -4.1342 -1.5614 4.5677 21 1 -4.4085 -0.1600 6.5277 22 1 -4.5832 0.8079 4.3112 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2574 1.5013 -2.1245 29 1 3.0795 3.8219 -2.1257 30 1 3.3150 5.0461 -0.0023 31 1 1.9958 0.3590 2.4074 32 1 2.4335 1.8392 3.2938 33 1 0.1937 2.6547 2.8198 34 1 -0.1904 2.8869 5.1211 35 1 0.0734 1.4722 6.1683 36 1 1.4274 2.1535 5.2349 37 1 -1.7415 -0.6223 6.9542 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390589337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:05 Heat of formation + Delta-G solvation = -9.730718 kcal Electronic energy + Delta-G solvation = -18385.274089 eV Core-core repulsion = 15573.024524 eV Total energy + Delta-G solvation = -2812.249565 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74450 -37.70246 -37.46334 -35.14819 -34.39253 -32.43777 -30.32911 -29.58746 -27.22761 -25.87446 -24.71400 -22.73874 -22.10152 -21.33300 -18.46354 -17.47186 -17.21193 -16.74972 -16.25263 -15.80901 -15.24185 -14.87958 -14.62805 -14.42728 -14.29997 -13.96331 -13.60155 -13.48318 -13.06933 -12.89672 -12.78505 -12.76139 -12.48559 -12.35274 -12.16847 -12.13780 -11.91381 -11.84518 -11.60301 -11.33140 -10.99942 -10.45850 -9.64871 -9.53200 -8.90007 -8.06575 -6.16959 0.25884 0.36867 1.22870 1.44056 1.44703 1.55228 2.45615 2.69873 3.22109 3.70567 3.76589 3.98808 4.08138 4.20443 4.33826 4.53423 4.61227 4.70486 4.71270 4.73985 4.76136 4.88279 4.91126 5.11731 5.13095 5.20154 5.29740 5.34870 5.41831 5.48861 5.69573 5.70853 5.81880 5.84778 5.97131 6.28963 6.65101 6.79217 6.96816 7.52505 8.98982 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.005932 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.870434 B = 4719.247106 C = 5594.510140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.077 4.077 3 C -0.060 4.060 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.123 4.123 7 C -0.044 4.044 8 Cl -0.082 7.082 9 C -0.082 4.082 10 C 0.096 3.904 11 N -0.662 5.662 12 C 0.221 3.779 13 H 0.003 0.997 14 C -0.153 4.153 15 C -0.506 4.506 16 H 0.056 0.944 17 C 0.009 3.991 18 N -0.923 5.923 19 Si 0.958 3.042 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.270 1.270 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.153 0.847 29 H 0.164 0.836 30 H 0.148 0.852 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.326 0.674 34 H 0.027 0.973 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.234 5.924 -15.081 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C -0.061 4.061 4 C -0.133 4.133 5 C -0.120 4.120 6 C -0.141 4.141 7 C -0.072 4.072 8 Cl -0.054 7.054 9 C -0.083 4.083 10 C -0.032 4.032 11 N -0.291 5.291 12 C 0.112 3.888 13 H 0.021 0.979 14 C -0.213 4.213 15 C -0.545 4.545 16 H 0.074 0.926 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.784 3.216 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.195 1.195 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.171 0.829 29 H 0.182 0.818 30 H 0.165 0.835 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.142 0.858 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.003 5.379 -15.147 18.423 hybrid contribution -0.455 0.380 1.573 1.681 sum 8.548 5.759 -13.573 17.043 Atomic orbital electron populations 1.21808 0.94638 1.01588 1.02955 1.20510 0.96417 0.91733 1.02695 1.19904 0.97195 0.97022 0.91934 1.21449 0.98479 0.95606 0.97765 1.21438 0.98162 0.94253 0.98169 1.21258 1.01125 1.01287 0.90448 1.21054 1.05282 0.93002 0.87812 1.98359 1.96435 1.76392 1.34176 1.19620 0.99941 0.92848 0.95933 1.20843 0.90353 0.99532 0.92508 1.60763 1.15733 1.16675 1.35968 1.18901 0.94648 0.91499 0.83711 0.97914 1.22213 0.96331 0.98959 1.03755 1.21394 0.93879 1.37940 1.01285 0.92619 1.25677 1.02134 0.95823 0.95223 1.70013 1.36867 1.42858 1.06664 0.85560 0.80578 0.78513 0.76957 1.20290 1.21192 1.19472 0.92632 0.93039 0.91574 0.89170 0.92216 0.82906 0.81845 0.83473 0.91187 0.95585 0.85751 0.95372 0.92013 0.96163 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.89 71.98 0.71 -3.86 16 2 C -0.08 -2.02 5.57 29.85 0.17 -1.85 16 3 C -0.06 -1.60 5.13 -19.87 -0.10 -1.70 16 4 C -0.12 -2.34 9.68 22.27 0.22 -2.12 16 5 C -0.10 -1.85 10.05 22.27 0.22 -1.63 16 6 C -0.12 -2.70 9.83 22.29 0.22 -2.49 16 7 C -0.04 -1.26 6.31 22.32 0.14 -1.12 16 8 Cl -0.08 -2.45 27.30 -2.72 -0.07 -2.52 16 9 C -0.08 -2.56 5.40 -19.84 -0.11 -2.66 16 10 C 0.10 3.57 4.74 85.56 0.41 3.98 16 11 N -0.66 -28.12 4.60 -499.46 -2.30 -30.42 16 12 C 0.22 11.22 2.57 44.17 0.11 11.33 16 13 H 0.00 0.16 7.80 -2.39 -0.02 0.15 16 14 C -0.15 -7.60 8.94 71.98 0.64 -6.95 16 15 C -0.51 -28.04 8.84 25.60 0.23 -27.81 16 16 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 17 C 0.01 0.52 5.30 84.66 0.45 0.97 16 18 N -0.92 -53.62 11.32 21.45 0.24 -53.38 16 19 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 2.49 6.39 -2.39 -0.02 2.48 16 26 H 0.09 1.83 8.05 -2.39 -0.02 1.81 16 27 H 0.06 1.76 6.15 -2.39 -0.01 1.74 16 28 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.07 2.66 5.94 -2.39 -0.01 2.65 16 32 H 0.03 1.00 6.20 -2.39 -0.01 0.99 16 33 H 0.33 13.83 8.46 -89.70 -0.76 13.07 16 34 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 35 H 0.06 3.40 6.07 -2.38 -0.01 3.39 16 36 H 0.02 0.90 7.45 -2.39 -0.02 0.88 16 37 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -60.50 313.58 3.51 -56.99 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.31 Total: 18.94 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 3.31 Total: -35.92 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.06 Total: -83.80 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.07 Total: -2.52 kcal Total: -60.50 3.51 -56.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390589337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.261 kcal (2) G-P(sol) polarization free energy of solvation -60.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds