Wall clock time and date at job start Mon Mar 30 2020 07:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46810 * 2 1 4 4 C 1.50699 * 109.46843 * 119.99519 * 2 1 3 5 5 H 1.08003 * 119.99582 * 120.00588 * 4 2 1 6 6 C 1.37871 * 120.00485 * 300.00143 * 4 2 1 7 7 N 1.31517 * 119.99960 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00320 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47003 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47616 * 119.99756 * 8 6 4 11 11 H 1.48501 * 109.47174 * 240.00041 * 8 6 4 12 12 N 1.46892 * 109.47051 * 240.00114 * 2 1 3 13 13 C 1.46893 * 111.00516 * 85.00025 * 12 2 1 14 14 C 1.53003 * 109.47543 * 180.02562 * 13 12 2 15 15 H 1.09005 * 109.46581 * 304.99827 * 14 13 12 16 16 C 1.52996 * 109.47073 * 64.99512 * 14 13 12 17 17 C 1.50694 * 109.47151 * 185.00086 * 14 13 12 18 18 C 1.38265 * 119.99277 * 300.01525 * 17 14 13 19 19 C 1.38216 * 120.02667 * 180.02562 * 18 17 14 20 20 C 1.38234 * 120.01494 * 359.96105 * 19 18 17 21 21 C 1.38328 * 119.98526 * 359.76620 * 20 19 18 22 22 Cl 1.73604 * 120.01692 * 180.27839 * 21 20 19 23 23 C 1.38195 * 119.99579 * 120.00131 * 17 14 13 24 24 H 1.09004 * 109.47537 * 299.99856 * 1 2 3 25 25 H 1.08997 * 109.47591 * 59.99975 * 1 2 3 26 26 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00291 * 180.02562 * 7 6 4 28 28 H 1.00908 * 110.99980 * 208.95541 * 12 2 1 29 29 H 1.09003 * 109.47373 * 59.99298 * 13 12 2 30 30 H 1.09008 * 109.47037 * 299.99687 * 13 12 2 31 31 H 1.09005 * 109.47160 * 60.00669 * 16 14 13 32 32 H 1.08998 * 109.47012 * 180.02562 * 16 14 13 33 33 H 1.08998 * 109.47475 * 300.00110 * 16 14 13 34 34 H 1.08007 * 119.98705 * 359.97438 * 18 17 14 35 35 H 1.08001 * 119.99346 * 179.97438 * 19 18 17 36 36 H 1.08007 * 120.00805 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00237 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5864 4.8166 12 7 2.0196 -0.6924 -1.1994 13 6 2.0824 0.2225 -2.3468 14 6 2.5950 -0.5333 -3.5745 15 1 3.5507 -1.0021 -3.3396 16 6 1.5824 -1.6098 -3.9701 17 6 2.7762 0.4308 -4.7184 18 6 1.6949 1.1487 -5.1951 19 6 1.8602 2.0328 -6.2446 20 6 3.1069 2.2003 -6.8179 21 6 4.1901 1.4865 -6.3377 22 17 5.7576 1.7016 -7.0523 23 6 4.0230 0.5974 -5.2907 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.7086 1.1614 3.4844 28 1 2.9173 -1.1205 -1.0287 29 1 2.7588 1.0462 -2.1182 30 1 1.0870 0.6162 -2.5526 31 1 0.6268 -1.1410 -4.2050 32 1 1.9478 -2.1485 -4.8444 33 1 1.4514 -2.3071 -3.1427 34 1 0.7206 1.0181 -4.7477 35 1 1.0152 2.5930 -6.6168 36 1 3.2360 2.8914 -7.6378 37 1 4.8674 0.0364 -4.9183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393778631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:23 Heat of formation + Delta-G solvation = -0.680607 kcal Electronic energy + Delta-G solvation = -17619.137287 eV Core-core repulsion = 14807.280164 eV Total energy + Delta-G solvation = -2811.857123 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.68249 -36.93328 -36.24027 -34.23106 -32.02579 -30.88589 -29.55654 -28.04067 -25.42447 -24.71638 -23.02175 -22.54541 -19.98815 -19.70136 -17.10665 -16.42618 -15.71748 -15.42286 -14.89938 -14.34576 -14.21311 -13.87342 -13.69841 -13.44748 -13.04286 -12.45846 -12.26763 -11.92143 -11.70434 -11.63344 -11.37666 -11.28215 -11.07367 -10.98767 -10.77648 -10.59758 -10.41758 -10.21643 -10.12181 -9.88376 -8.96683 -8.83464 -8.67652 -8.48440 -7.27282 -6.03505 -4.09939 1.08989 1.19712 2.00829 3.28046 3.36020 3.40005 3.55618 4.39022 4.59847 4.72095 4.96653 5.11247 5.20577 5.28043 5.34168 5.39442 5.51410 5.69665 5.73075 5.90459 6.08257 6.09927 6.17132 6.27170 6.30361 6.39676 6.59377 6.67819 6.75829 6.87829 7.13068 7.22954 7.49648 7.77516 7.89143 8.26636 8.37504 8.66254 9.00988 9.56244 11.02862 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.003608 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.761789 B = 7758.914820 C = 8093.481768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.686 5.686 13 C 0.070 3.930 14 C -0.053 4.053 15 H 0.076 0.924 16 C -0.131 4.131 17 C -0.051 4.051 18 C -0.108 4.108 19 C -0.106 4.106 20 C -0.122 4.122 21 C -0.033 4.033 22 Cl -0.079 7.079 23 C -0.111 4.111 24 H 0.080 0.920 25 H 0.003 0.997 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.329 0.671 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 1.277 -18.271 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.317 5.317 13 C -0.060 4.060 14 C -0.072 4.072 15 H 0.094 0.906 16 C -0.188 4.188 17 C -0.052 4.052 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.141 4.141 21 C -0.059 4.059 22 Cl -0.050 7.050 23 C -0.129 4.129 24 H 0.098 0.902 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.115 1.167 -18.347 18.646 hybrid contribution 1.227 0.288 1.022 1.623 sum 4.342 1.455 -17.324 17.920 Atomic orbital electron populations 1.21702 0.97894 0.99287 0.99271 1.19099 0.92605 0.92317 0.85617 0.98253 1.21303 1.31356 1.12478 0.90456 0.92159 1.24924 0.95058 0.94998 0.99071 1.69910 1.36698 1.22940 1.23344 0.86474 0.78611 0.79613 0.82892 1.19744 1.21117 1.20985 1.60724 1.31950 1.33046 1.05954 1.21931 0.99653 0.93798 0.90603 1.20256 1.00449 0.94442 0.92014 0.90569 1.21707 0.97776 0.98226 1.01132 1.20001 0.92243 0.96668 0.96307 1.21207 0.99353 0.95776 0.96264 1.21106 0.96648 0.98400 0.96304 1.20987 0.91777 1.00268 1.01074 1.20896 0.86540 1.00679 0.97816 1.98360 1.26989 1.96565 1.83134 1.21005 0.97949 0.98394 0.95576 0.90180 0.97807 0.94974 0.92996 0.85362 0.96305 0.91650 0.92968 0.93831 0.90461 0.85162 0.85210 0.85328 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.19 37.16 0.34 -2.70 16 2 C 0.21 5.29 2.60 -68.87 -0.18 5.11 16 3 H 0.00 0.00 7.80 -51.92 -0.40 -0.41 16 4 C -0.52 -14.07 8.59 -34.44 -0.30 -14.37 16 5 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.69 -14.08 5.76 -107.95 -0.62 -14.70 16 13 C 0.07 1.22 4.61 -3.83 -0.02 1.20 16 14 C -0.05 -0.73 2.70 -91.77 -0.25 -0.98 16 15 H 0.08 1.03 7.88 -51.93 -0.41 0.62 16 16 C -0.13 -1.73 8.89 37.16 0.33 -1.40 16 17 C -0.05 -0.66 4.78 -104.63 -0.50 -1.16 16 18 C -0.11 -1.28 8.76 -39.58 -0.35 -1.62 16 19 C -0.11 -1.10 10.05 -39.59 -0.40 -1.50 16 20 C -0.12 -1.29 9.83 -39.55 -0.39 -1.68 16 21 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 22 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 23 C -0.11 -1.36 9.46 -39.55 -0.37 -1.73 16 24 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.33 6.63 8.22 -39.29 -0.32 6.30 16 29 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 30 H 0.07 1.16 6.86 -51.92 -0.36 0.80 16 31 H 0.05 0.67 7.39 -51.93 -0.38 0.28 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 34 H 0.13 1.46 7.16 -52.48 -0.38 1.09 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.13 1.49 7.95 -52.49 -0.42 1.07 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -28.11 318.90 -9.55 -37.66 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.42 Total: 3.07 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -2.42 Total: -19.86 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.01 Total: -39.46 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.11 -9.55 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393778631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.983 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds