Wall clock time and date at job start Mon Mar 30 2020 07:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46810 * 2 1 4 4 C 1.50699 * 109.46843 * 119.99519 * 2 1 3 5 5 H 1.08003 * 119.99582 * 120.00588 * 4 2 1 6 6 C 1.37871 * 120.00485 * 300.00143 * 4 2 1 7 7 N 1.31517 * 119.99960 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00320 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47003 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47616 * 119.99756 * 8 6 4 11 11 H 1.48501 * 109.47174 * 240.00041 * 8 6 4 12 12 N 1.46892 * 109.47051 * 240.00114 * 2 1 3 13 13 C 1.46893 * 111.00516 * 85.00025 * 12 2 1 14 14 C 1.53003 * 109.47543 * 180.02562 * 13 12 2 15 15 H 1.09005 * 109.46581 * 304.99827 * 14 13 12 16 16 C 1.52996 * 109.47073 * 64.99512 * 14 13 12 17 17 C 1.50694 * 109.47151 * 185.00086 * 14 13 12 18 18 C 1.38265 * 119.99277 * 300.01525 * 17 14 13 19 19 C 1.38216 * 120.02667 * 180.02562 * 18 17 14 20 20 C 1.38234 * 120.01494 * 359.96105 * 19 18 17 21 21 C 1.38328 * 119.98526 * 359.76620 * 20 19 18 22 22 Cl 1.73604 * 120.01692 * 180.27839 * 21 20 19 23 23 C 1.38195 * 119.99579 * 120.00131 * 17 14 13 24 24 H 1.09004 * 109.47537 * 299.99856 * 1 2 3 25 25 H 1.08997 * 109.47591 * 59.99975 * 1 2 3 26 26 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00291 * 180.02562 * 7 6 4 28 28 H 1.00908 * 110.99980 * 208.95541 * 12 2 1 29 29 H 1.09003 * 109.47373 * 59.99298 * 13 12 2 30 30 H 1.09008 * 109.47037 * 299.99687 * 13 12 2 31 31 H 1.09005 * 109.47160 * 60.00669 * 16 14 13 32 32 H 1.08998 * 109.47012 * 180.02562 * 16 14 13 33 33 H 1.08998 * 109.47475 * 300.00110 * 16 14 13 34 34 H 1.08007 * 119.98705 * 359.97438 * 18 17 14 35 35 H 1.08001 * 119.99346 * 179.97438 * 19 18 17 36 36 H 1.08007 * 120.00805 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00237 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5864 4.8166 12 7 2.0196 -0.6924 -1.1994 13 6 2.0824 0.2225 -2.3468 14 6 2.5950 -0.5333 -3.5745 15 1 3.5507 -1.0021 -3.3396 16 6 1.5824 -1.6098 -3.9701 17 6 2.7762 0.4308 -4.7184 18 6 1.6949 1.1487 -5.1951 19 6 1.8602 2.0328 -6.2446 20 6 3.1069 2.2003 -6.8179 21 6 4.1901 1.4865 -6.3377 22 17 5.7576 1.7016 -7.0523 23 6 4.0230 0.5974 -5.2907 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.7086 1.1614 3.4844 28 1 2.9173 -1.1205 -1.0287 29 1 2.7588 1.0462 -2.1182 30 1 1.0870 0.6162 -2.5526 31 1 0.6268 -1.1410 -4.2050 32 1 1.9478 -2.1485 -4.8444 33 1 1.4514 -2.3071 -3.1427 34 1 0.7206 1.0181 -4.7477 35 1 1.0152 2.5930 -6.6168 36 1 3.2360 2.8914 -7.6378 37 1 4.8674 0.0364 -4.9183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393778631.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:23 Heat of formation + Delta-G solvation = -15.178427 kcal Electronic energy + Delta-G solvation = -17619.765960 eV Core-core repulsion = 14807.280164 eV Total energy + Delta-G solvation = -2812.485796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61809 -38.21102 -37.38927 -35.75665 -33.81087 -31.77468 -30.83137 -29.56021 -27.38900 -26.17960 -24.08676 -23.52894 -21.71144 -21.02264 -18.52641 -17.92616 -16.89316 -16.61895 -16.33429 -15.95076 -15.51154 -15.15938 -14.86923 -14.53719 -14.33719 -14.10790 -13.65501 -13.19250 -13.05360 -12.84920 -12.75840 -12.59543 -12.51296 -12.43801 -12.20898 -12.18036 -12.03224 -11.85202 -11.58482 -11.40897 -10.86210 -10.57306 -9.85072 -9.60351 -9.03289 -8.12961 -6.27041 0.20034 0.31899 1.14269 1.41697 1.43645 1.55273 2.41877 2.66506 3.15814 3.49232 3.81677 3.94029 4.02505 4.21136 4.31220 4.37708 4.44543 4.50006 4.73350 4.82370 4.86937 4.93848 4.99709 5.08502 5.12429 5.21463 5.24453 5.26366 5.37946 5.49470 5.53670 5.65744 5.68221 5.85707 5.89505 6.23689 6.47600 6.78591 7.01481 7.43670 8.92909 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.003608 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.761789 B = 7758.914820 C = 8093.481768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.215 3.785 3 H -0.035 1.035 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.679 5.679 13 C 0.076 3.924 14 C -0.041 4.041 15 H 0.078 0.922 16 C -0.126 4.126 17 C -0.065 4.065 18 C -0.118 4.118 19 C -0.103 4.103 20 C -0.120 4.120 21 C -0.043 4.043 22 Cl -0.075 7.075 23 C -0.120 4.120 24 H 0.054 0.946 25 H 0.022 0.978 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.332 0.668 29 H 0.004 0.996 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 0.999 -19.408 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.017 1.017 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.309 5.309 13 C -0.054 4.054 14 C -0.060 4.060 15 H 0.097 0.903 16 C -0.183 4.183 17 C -0.066 4.066 18 C -0.136 4.136 19 C -0.121 4.121 20 C -0.139 4.139 21 C -0.070 4.070 22 Cl -0.046 7.046 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.022 0.978 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.363 0.881 -19.505 19.812 hybrid contribution 1.162 0.431 1.294 1.792 sum 4.524 1.312 -18.211 18.810 Atomic orbital electron populations 1.21518 0.97616 0.98906 0.98937 1.18911 0.92829 0.90597 0.87046 1.01744 1.21635 1.31546 1.12659 0.91594 0.92119 1.25739 0.95197 0.95679 1.02088 1.70037 1.37568 1.24147 1.24072 0.85439 0.78107 0.78605 0.79058 1.18958 1.20766 1.20605 1.60637 1.32080 1.33066 1.05137 1.21933 0.99337 0.93286 0.90847 1.20080 1.00507 0.94540 0.90868 0.90335 1.21646 0.97818 0.97700 1.01131 1.19879 0.92975 0.97301 0.96448 1.21367 0.99224 0.96118 0.96867 1.21417 0.97521 0.97744 0.95397 1.21307 0.91416 0.99929 1.01245 1.21038 0.87192 1.00856 0.97890 1.98360 1.26739 1.96525 1.82967 1.21081 0.97890 0.98872 0.96040 0.92670 0.95938 0.95171 0.92890 0.85104 0.97812 0.91961 0.92654 0.92126 0.92091 0.84868 0.82469 0.83192 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.54 9.19 71.98 0.66 -4.88 16 2 C 0.21 10.95 2.60 44.17 0.11 11.06 16 3 H -0.03 -2.00 7.80 -2.38 -0.02 -2.01 16 4 C -0.54 -29.39 8.59 25.60 0.22 -29.17 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 8 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 N -0.68 -28.02 5.76 -495.46 -2.85 -30.87 16 13 C 0.08 2.63 4.61 86.31 0.40 3.03 16 14 C -0.04 -1.11 2.70 -11.54 -0.03 -1.14 16 15 H 0.08 2.07 7.88 -2.38 -0.02 2.05 16 16 C -0.13 -3.16 8.89 71.98 0.64 -2.52 16 17 C -0.07 -1.59 4.78 -19.87 -0.09 -1.69 16 18 C -0.12 -2.59 8.76 22.27 0.20 -2.40 16 19 C -0.10 -1.87 10.05 22.26 0.22 -1.64 16 20 C -0.12 -2.24 9.83 22.29 0.22 -2.02 16 21 C -0.04 -0.94 6.32 22.32 0.14 -0.80 16 22 Cl -0.07 -1.51 28.96 -2.72 -0.08 -1.59 16 23 C -0.12 -2.81 9.46 22.29 0.21 -2.60 16 24 H 0.05 3.02 6.07 -2.38 -0.01 3.01 16 25 H 0.02 0.98 7.45 -2.39 -0.02 0.96 16 26 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.33 13.40 8.22 -89.69 -0.74 12.66 16 29 H 0.00 0.14 8.06 -2.39 -0.02 0.12 16 30 H 0.06 2.19 6.86 -2.38 -0.02 2.17 16 31 H 0.05 1.34 7.39 -2.38 -0.02 1.32 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.73 7.75 -2.39 -0.02 1.71 16 34 H 0.13 2.80 7.16 -2.91 -0.02 2.78 16 35 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.13 2.94 7.95 -2.91 -0.02 2.92 16 Total: -1.00 -59.67 318.90 3.01 -56.66 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.32 Total: 16.89 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 3.35 Total: -33.66 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -2.61 Total: -83.73 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -59.67 3.01 -56.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393778631.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.484 kcal (2) G-P(sol) polarization free energy of solvation -59.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds