Wall clock time and date at job start Mon Mar 30 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47009 * 2 1 4 4 C 1.50707 * 109.46834 * 179.97438 * 3 2 1 5 5 N 1.27565 * 124.80609 * 89.97785 * 4 3 2 6 6 N 1.37810 * 116.54789 * 179.74287 * 5 4 3 7 7 H 0.96993 * 122.97847 * 180.32698 * 6 5 4 8 8 C 1.35588 * 114.04422 * 0.50393 * 6 5 4 9 9 N 1.31089 * 125.80734 * 179.79741 * 8 6 5 10 10 C 1.46496 * 120.00094 * 359.69594 * 9 8 6 11 11 C 1.53005 * 109.47081 * 114.97776 * 10 9 8 12 12 C 1.50700 * 115.55059 * 35.66899 * 11 10 9 13 13 H 1.08006 * 120.00117 * 264.69890 * 12 11 10 14 14 C 1.37880 * 120.00500 * 84.69209 * 12 11 10 15 15 N 1.31523 * 119.99444 * 351.06028 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 171.05502 * 14 12 11 17 17 H 1.48496 * 109.47065 * 60.00183 * 16 14 12 18 18 H 1.48500 * 109.46846 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47091 * 300.00005 * 16 14 12 20 20 C 1.52994 * 117.49994 * 249.95546 * 11 10 9 21 21 C 1.53002 * 117.49727 * 181.33106 * 11 10 9 22 22 S 1.75879 * 124.80672 * 269.99577 * 4 3 2 23 23 H 1.08994 * 109.46929 * 59.99987 * 1 2 3 24 24 H 1.08992 * 109.46665 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47093 * 300.00154 * 1 2 3 26 26 H 1.08993 * 109.47835 * 240.00119 * 2 1 3 27 27 H 1.09003 * 109.47474 * 119.99777 * 2 1 3 28 28 H 1.08995 * 109.47002 * 60.00166 * 3 2 1 29 29 H 1.09004 * 109.47131 * 299.99729 * 3 2 1 30 30 H 1.08992 * 109.47544 * 354.97917 * 10 9 8 31 31 H 1.09003 * 109.47000 * 234.97595 * 10 9 8 32 32 H 0.97003 * 119.99507 * 179.97438 * 15 14 12 33 33 H 1.09000 * 117.49802 * 0.02562 * 20 11 10 34 34 H 1.09009 * 117.49958 * 145.02130 * 20 11 10 35 35 H 1.08999 * 117.50249 * 214.97831 * 21 11 10 36 36 H 1.09002 * 117.49877 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5471 1.4425 0.0006 5 7 4.2756 1.4420 -1.0465 6 7 5.6394 1.4475 -0.8480 7 1 6.2790 1.4523 -1.5771 8 6 6.0077 1.4420 0.4569 9 7 7.2392 1.4418 0.9062 10 6 8.3622 1.4412 -0.0346 11 6 9.1447 2.7486 0.1044 12 6 9.2402 3.3035 1.5022 13 1 8.5371 4.0528 1.8350 14 6 10.2250 2.8547 2.3565 15 7 10.9681 1.8233 2.0191 16 14 10.5040 3.7116 3.9927 17 1 9.2638 3.6407 4.8064 18 1 11.6123 3.0419 4.7195 19 1 10.8580 5.1336 3.7528 20 6 9.0581 3.7498 -1.0492 21 6 10.3454 2.9550 -0.8211 22 16 4.5504 1.4428 1.4452 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 7.9833 1.3510 -1.0526 31 1 9.0192 0.5994 0.1845 32 1 11.6612 1.5077 2.6199 33 1 8.4433 3.4772 -1.9071 34 1 9.0700 4.8103 -0.7973 35 1 11.2042 3.4926 -0.4191 36 1 10.5782 2.1592 -1.5287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393815701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:04 Heat of formation + Delta-G solvation = 87.699580 kcal Electronic energy + Delta-G solvation = -17679.124929 eV Core-core repulsion = 14905.436717 eV Total energy + Delta-G solvation = -2773.688213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.60377 -37.00402 -35.72804 -33.94153 -31.83020 -30.71691 -27.50066 -26.68049 -25.26053 -23.03493 -21.99056 -21.16767 -19.94122 -18.86980 -18.67164 -16.96786 -15.74039 -15.20653 -15.04493 -14.67584 -14.52238 -14.01050 -13.75864 -13.39102 -12.90840 -12.74169 -12.39485 -12.15090 -11.86328 -11.59752 -11.52536 -10.97923 -10.95948 -10.88218 -10.59121 -10.45657 -10.20938 -10.15173 -9.66843 -9.28054 -9.08744 -8.55534 -8.35964 -8.09841 -7.10421 -5.94332 -3.94725 1.24599 1.68715 1.88217 2.73109 2.87679 3.39089 3.42313 3.46235 4.49198 4.51107 4.75230 4.78708 5.03864 5.24940 5.30793 5.34406 5.43152 5.52437 5.54697 5.68955 5.84349 5.93933 6.04359 6.05802 6.14052 6.34758 6.55384 6.65169 6.93458 6.97111 7.04336 7.35914 7.45978 7.84312 7.98646 8.36573 8.59889 9.01241 9.68294 11.16515 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.004679 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.058164 B = 5983.356029 C = 6603.491815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.031 4.031 4 C 0.046 3.954 5 N -0.228 5.228 6 N -0.563 5.563 7 H 0.436 0.564 8 C 0.272 3.728 9 N -0.456 5.456 10 C 0.102 3.898 11 C 0.052 3.948 12 C -0.472 4.472 13 H 0.056 0.944 14 C 0.075 3.925 15 N -0.881 5.881 16 Si 0.888 3.112 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.279 1.279 20 C -0.216 4.216 21 C -0.156 4.156 22 S 0.067 5.933 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.002 0.998 31 H 0.090 0.910 32 H 0.258 0.742 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.498 -3.127 -4.877 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.073 4.073 4 C -0.257 4.257 5 N -0.042 5.042 6 N -0.304 5.304 7 H 0.283 0.717 8 C -0.117 4.117 9 N -0.182 5.182 10 C -0.031 4.031 11 C 0.050 3.950 12 C -0.509 4.509 13 H 0.074 0.926 14 C -0.128 4.128 15 N -0.518 5.518 16 Si 0.716 3.284 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.205 1.205 20 C -0.253 4.253 21 C -0.194 4.194 22 S 0.297 5.703 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.021 0.979 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.968 -3.252 -3.743 17.678 hybrid contribution 1.094 0.447 -0.907 1.490 sum -15.874 -2.805 -4.650 16.778 Atomic orbital electron populations 1.21757 0.95043 1.01996 1.02047 1.21542 0.96077 0.95165 1.03212 1.20223 0.83568 0.98909 1.04550 1.27455 1.00919 1.05517 0.91805 1.73056 0.90919 1.14263 1.26001 1.46622 1.01418 1.75587 1.06804 0.71699 1.24938 0.99433 1.03050 0.84242 1.73204 0.94409 1.17861 1.32752 1.21710 0.91060 1.01271 0.89024 1.18840 0.94891 0.89887 0.91339 1.20095 1.13762 1.22151 0.94934 0.92620 1.24865 0.95886 0.94408 0.97598 1.69997 1.21529 1.23301 1.36999 0.86722 0.77785 0.79681 0.84201 1.20098 1.21409 1.20481 1.23102 1.02627 0.98237 1.01356 1.22551 0.92508 1.01282 1.03034 1.85581 0.92966 1.85972 1.05747 0.92515 0.92427 0.92411 0.91349 0.91163 0.88969 0.88879 0.97939 0.89234 0.93225 0.92264 0.90345 0.89824 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 3 C -0.03 -0.27 5.82 -27.88 -0.16 -0.43 16 4 C 0.05 0.61 6.84 -14.05 -0.10 0.51 16 5 N -0.23 -3.45 11.96 32.97 0.39 -3.06 16 6 N -0.56 -9.66 6.79 30.42 0.21 -9.45 16 7 H 0.44 7.07 7.05 -184.30 -1.30 5.78 16 8 C 0.27 5.34 8.29 -89.38 -0.74 4.60 16 9 N -0.46 -10.65 9.89 -61.38 -0.61 -11.26 16 10 C 0.10 2.38 6.50 -4.04 -0.03 2.35 16 11 C 0.05 1.30 1.77 -155.66 -0.28 1.02 16 12 C -0.47 -13.31 8.05 -34.44 -0.28 -13.58 16 13 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 14 C 0.08 2.13 5.38 -17.81 -0.10 2.03 16 15 N -0.88 -25.53 13.03 55.43 0.72 -24.81 16 16 Si 0.89 22.02 29.55 -169.99 -5.02 16.99 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.22 -4.82 9.88 -26.73 -0.26 -5.08 16 21 C -0.16 -3.67 9.56 -26.73 -0.26 -3.93 16 22 S 0.07 1.06 23.35 -107.50 -2.51 -1.45 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.00 0.05 5.77 -51.93 -0.30 -0.25 16 31 H 0.09 2.26 8.14 -51.93 -0.42 1.83 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 34 H 0.08 1.76 8.14 -51.92 -0.42 1.33 16 35 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -31.01 320.36 -10.18 -41.19 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.21 Total: 1.15 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -1.98 Total: -14.14 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.72 Total: -48.57 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.01 -10.18 -41.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393815701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.893 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds