Wall clock time and date at job start Mon Mar 30 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47009 * 2 1 4 4 C 1.50707 * 109.46834 * 179.97438 * 3 2 1 5 5 N 1.27565 * 124.80609 * 89.97785 * 4 3 2 6 6 N 1.37810 * 116.54789 * 179.74287 * 5 4 3 7 7 H 0.96993 * 122.97847 * 180.32698 * 6 5 4 8 8 C 1.35588 * 114.04422 * 0.50393 * 6 5 4 9 9 N 1.31089 * 125.80734 * 179.79741 * 8 6 5 10 10 C 1.46496 * 120.00094 * 359.69594 * 9 8 6 11 11 C 1.53005 * 109.47081 * 114.97776 * 10 9 8 12 12 C 1.50700 * 115.55059 * 35.66899 * 11 10 9 13 13 H 1.08006 * 120.00117 * 264.69890 * 12 11 10 14 14 C 1.37880 * 120.00500 * 84.69209 * 12 11 10 15 15 N 1.31523 * 119.99444 * 351.06028 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 171.05502 * 14 12 11 17 17 H 1.48496 * 109.47065 * 60.00183 * 16 14 12 18 18 H 1.48500 * 109.46846 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47091 * 300.00005 * 16 14 12 20 20 C 1.52994 * 117.49994 * 249.95546 * 11 10 9 21 21 C 1.53002 * 117.49727 * 181.33106 * 11 10 9 22 22 S 1.75879 * 124.80672 * 269.99577 * 4 3 2 23 23 H 1.08994 * 109.46929 * 59.99987 * 1 2 3 24 24 H 1.08992 * 109.46665 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47093 * 300.00154 * 1 2 3 26 26 H 1.08993 * 109.47835 * 240.00119 * 2 1 3 27 27 H 1.09003 * 109.47474 * 119.99777 * 2 1 3 28 28 H 1.08995 * 109.47002 * 60.00166 * 3 2 1 29 29 H 1.09004 * 109.47131 * 299.99729 * 3 2 1 30 30 H 1.08992 * 109.47544 * 354.97917 * 10 9 8 31 31 H 1.09003 * 109.47000 * 234.97595 * 10 9 8 32 32 H 0.97003 * 119.99507 * 179.97438 * 15 14 12 33 33 H 1.09000 * 117.49802 * 0.02562 * 20 11 10 34 34 H 1.09009 * 117.49958 * 145.02130 * 20 11 10 35 35 H 1.08999 * 117.50249 * 214.97831 * 21 11 10 36 36 H 1.09002 * 117.49877 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5471 1.4425 0.0006 5 7 4.2756 1.4420 -1.0465 6 7 5.6394 1.4475 -0.8480 7 1 6.2790 1.4523 -1.5771 8 6 6.0077 1.4420 0.4569 9 7 7.2392 1.4418 0.9062 10 6 8.3622 1.4412 -0.0346 11 6 9.1447 2.7486 0.1044 12 6 9.2402 3.3035 1.5022 13 1 8.5371 4.0528 1.8350 14 6 10.2250 2.8547 2.3565 15 7 10.9681 1.8233 2.0191 16 14 10.5040 3.7116 3.9927 17 1 9.2638 3.6407 4.8064 18 1 11.6123 3.0419 4.7195 19 1 10.8580 5.1336 3.7528 20 6 9.0581 3.7498 -1.0492 21 6 10.3454 2.9550 -0.8211 22 16 4.5504 1.4428 1.4452 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 7.9833 1.3510 -1.0526 31 1 9.0192 0.5994 0.1845 32 1 11.6612 1.5077 2.6199 33 1 8.4433 3.4772 -1.9071 34 1 9.0700 4.8103 -0.7973 35 1 11.2042 3.4926 -0.4191 36 1 10.5782 2.1592 -1.5287 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393815701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:03 Heat of formation + Delta-G solvation = 68.605902 kcal Electronic energy + Delta-G solvation = -17679.952894 eV Core-core repulsion = 14905.436717 eV Total energy + Delta-G solvation = -2774.516177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92268 -38.74895 -36.81376 -35.17679 -33.94734 -31.89074 -28.73304 -27.97688 -27.33820 -24.37314 -23.02582 -22.77648 -21.34859 -20.50663 -19.97511 -18.55538 -17.59874 -16.63312 -16.32907 -16.08103 -15.69697 -15.49921 -15.24661 -14.60419 -14.49400 -14.12183 -13.70459 -13.37280 -13.02268 -12.92089 -12.85774 -12.65737 -12.44831 -12.31449 -12.07654 -11.90386 -11.64507 -11.41907 -11.33461 -10.93576 -10.61163 -10.43444 -10.21636 -9.99584 -8.57872 -8.07351 -6.12349 -0.10472 0.51198 0.58035 1.22142 1.39810 1.41582 1.48165 1.62834 2.45485 3.22760 3.34033 3.47482 3.88704 4.07600 4.15906 4.22885 4.32345 4.38830 4.52303 4.70281 4.70708 4.83747 4.86025 4.87673 5.03491 5.09300 5.16976 5.31912 5.36211 5.45596 5.54291 5.54518 5.72046 5.79306 6.38916 6.57912 6.81994 7.00721 7.52170 9.02543 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.004679 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.058164 B = 5983.356029 C = 6603.491815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.032 4.032 4 C 0.071 3.929 5 N -0.242 5.242 6 N -0.566 5.566 7 H 0.438 0.562 8 C 0.276 3.724 9 N -0.519 5.519 10 C 0.116 3.884 11 C 0.020 3.980 12 C -0.481 4.481 13 H 0.037 0.963 14 C 0.030 3.970 15 N -0.906 5.906 16 Si 0.942 3.058 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.192 4.192 21 C -0.157 4.157 22 S 0.080 5.920 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.027 0.973 31 H 0.056 0.944 32 H 0.257 0.743 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.138 -2.742 -5.319 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.074 4.074 4 C -0.231 4.231 5 N -0.055 5.055 6 N -0.305 5.305 7 H 0.285 0.715 8 C -0.112 4.112 9 N -0.249 5.249 10 C -0.016 4.016 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.055 0.945 14 C -0.170 4.170 15 N -0.545 5.545 16 Si 0.768 3.232 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.229 4.229 21 C -0.195 4.195 22 S 0.311 5.689 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.638 -2.858 -4.211 20.287 hybrid contribution 1.658 0.317 -0.797 1.866 sum -17.980 -2.541 -5.007 18.837 Atomic orbital electron populations 1.21733 0.93311 1.02548 1.02894 1.21528 0.97491 0.94127 1.02625 1.20576 0.80069 1.00131 1.06593 1.28365 1.02503 1.02296 0.89982 1.73173 0.89694 1.16455 1.26198 1.46710 1.02585 1.75187 1.06060 0.71508 1.25468 0.99694 1.00185 0.85883 1.73183 0.95508 1.22807 1.33354 1.21317 0.91018 0.98791 0.90502 1.18975 0.96545 0.91782 0.90795 1.20252 1.13215 1.21634 0.96773 0.94480 1.25503 0.95926 0.95022 1.00529 1.70099 1.22040 1.24334 1.37979 0.85871 0.77550 0.78991 0.80761 1.20230 1.20840 1.19802 1.23078 1.01564 0.97405 1.00869 1.22465 0.91977 1.01924 1.03118 1.85585 0.91569 1.85180 1.06552 0.91772 0.92105 0.91479 0.92225 0.91605 0.86645 0.86994 0.95494 0.92592 0.93441 0.89349 0.90720 0.92002 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.49 5.92 30.60 0.18 -1.31 16 3 C -0.03 -0.45 5.82 29.85 0.17 -0.27 16 4 C 0.07 1.69 6.84 88.73 0.61 2.30 16 5 N -0.24 -6.80 11.96 -48.92 -0.59 -7.38 16 6 N -0.57 -18.72 6.79 -57.66 -0.39 -19.11 16 7 H 0.44 13.72 7.05 -214.77 -1.51 12.21 16 8 C 0.28 10.70 8.29 179.92 1.49 12.19 16 9 N -0.52 -24.64 9.89 -348.10 -3.44 -28.08 16 10 C 0.12 5.54 6.50 86.38 0.56 6.10 16 11 C 0.02 1.03 1.77 -52.93 -0.09 0.93 16 12 C -0.48 -27.71 8.05 25.60 0.21 -27.50 16 13 H 0.04 2.21 7.83 -2.91 -0.02 2.19 16 14 C 0.03 1.73 5.38 84.65 0.46 2.19 16 15 N -0.91 -53.83 13.03 21.45 0.28 -53.55 16 16 Si 0.94 45.90 29.55 68.60 2.03 47.93 16 17 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 20 C -0.19 -8.41 9.88 30.59 0.30 -8.11 16 21 C -0.16 -7.44 9.56 30.60 0.29 -7.15 16 22 S 0.08 2.41 23.35 -56.49 -1.32 1.09 16 23 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.03 1.09 5.77 -2.39 -0.01 1.08 16 31 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.09 3.32 8.06 -2.39 -0.02 3.30 16 34 H 0.07 3.29 8.14 -2.38 -0.02 3.27 16 35 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -68.00 320.36 1.03 -66.97 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.43 Total: 13.32 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.89 Total: -21.18 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.14 Total: -108.13 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.32 Total: 1.09 kcal Total: -68.00 1.03 -66.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393815701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.577 kcal (2) G-P(sol) polarization free energy of solvation -67.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds