Wall clock time and date at job start Mon Mar 30 2020 06:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99427 * 2 1 4 4 H 1.48505 * 109.47398 * 270.00170 * 3 2 1 5 5 H 1.48503 * 109.47513 * 30.00079 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00443 * 3 2 1 7 7 C 1.37874 * 120.00759 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99734 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50194 * 299.92434 * 9 7 2 11 11 C 1.53119 * 109.50423 * 59.99701 * 9 7 2 12 12 C 1.53119 * 109.16089 * 177.63198 * 11 9 7 13 13 C 1.53032 * 109.28214 * 302.35055 * 12 11 9 14 14 N 1.46849 * 109.52455 * 59.17680 * 13 12 11 15 15 C 1.46890 * 110.99927 * 174.15859 * 14 13 12 16 16 C 1.53009 * 109.46969 * 66.05100 * 15 14 13 17 17 O 1.42899 * 109.47113 * 64.99548 * 16 15 14 18 18 C 1.42900 * 113.99816 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.47006 * 60.00087 * 18 17 16 20 20 F 1.39900 * 109.47309 * 300.00388 * 18 17 16 21 21 F 1.39897 * 109.47274 * 179.97438 * 18 17 16 22 22 C 1.46850 * 111.19660 * 298.26175 * 14 13 12 23 23 H 0.96999 * 120.00945 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.52255 * 57.73200 * 11 9 7 25 25 H 1.09001 * 109.58039 * 297.57434 * 11 9 7 26 26 H 1.09003 * 109.50542 * 182.40368 * 12 11 9 27 27 H 1.08999 * 109.53409 * 62.31254 * 12 11 9 28 28 H 1.09005 * 109.46272 * 299.15900 * 13 12 11 29 29 H 1.09003 * 109.45293 * 179.19060 * 13 12 11 30 30 H 1.09005 * 109.47853 * 306.05037 * 15 14 13 31 31 H 1.09002 * 109.47208 * 186.04277 * 15 14 13 32 32 H 1.08997 * 109.46790 * 304.98996 * 16 15 14 33 33 H 1.09007 * 109.46849 * 184.99508 * 16 15 14 34 34 H 1.08994 * 109.45913 * 181.75918 * 22 14 13 35 35 H 1.08999 * 109.45599 * 301.72167 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 1 0.6258 -2.5582 0.8902 11 6 0.3702 -2.5808 -1.2501 12 6 -0.3461 -3.9339 -1.2724 13 6 0.6934 -5.0565 -1.2407 14 7 1.5102 -4.9348 -0.0264 15 6 2.4270 -6.0746 0.1077 16 6 3.4536 -6.0395 -1.0264 17 8 4.2733 -4.8769 -0.8912 18 6 5.2712 -4.7481 -1.9058 19 9 4.6547 -4.6750 -3.1596 20 9 6.1208 -5.8589 -1.8680 21 9 6.0146 -3.5840 -1.6837 22 6 2.2445 -3.6633 -0.0056 23 1 -0.4851 0.8400 0.0004 24 1 0.9910 -2.4826 -2.1407 25 1 -0.3674 -1.7784 -1.2301 26 1 -0.9420 -4.0153 -2.1815 27 1 -0.9972 -4.0160 -0.4021 28 1 1.3349 -4.9825 -2.1188 29 1 0.1860 -6.0213 -1.2419 30 1 1.8608 -7.0046 0.0565 31 1 2.9426 -6.0154 1.0662 32 1 2.9352 -6.0093 -1.9848 33 1 4.0779 -6.9318 -0.9791 34 1 2.8639 -3.6162 0.8900 35 1 2.8787 -3.5958 -0.8895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397598165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:43 Heat of formation + Delta-G solvation = -211.867989 kcal Electronic energy + Delta-G solvation = -22056.722559 eV Core-core repulsion = 18253.141759 eV Total energy + Delta-G solvation = -3803.580800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.06695 -47.80106 -47.76118 -39.21972 -37.22598 -33.91406 -31.95253 -29.87368 -28.60449 -25.29778 -24.89093 -23.67828 -21.66157 -21.04000 -19.32117 -19.05240 -18.73361 -18.22083 -16.47597 -15.66606 -15.34165 -14.70056 -14.58510 -14.45068 -14.42529 -14.18583 -14.07651 -13.93508 -13.91685 -13.68269 -13.09072 -12.62719 -12.43376 -12.20802 -11.87162 -11.69413 -11.39861 -11.01408 -10.85184 -10.60297 -10.44278 -10.01370 -9.74395 -9.41121 -8.99148 -8.65616 -8.25604 -7.65490 -5.92127 -3.97437 2.03362 3.18007 3.35027 3.41501 3.45671 4.14329 4.22720 4.40029 4.56128 4.85931 5.01750 5.06969 5.35871 5.38269 5.68257 5.76145 5.94833 6.04977 6.12629 6.31779 6.54463 6.59277 6.73020 6.81781 7.07191 7.24110 7.41606 7.63513 7.78327 7.83588 8.13734 8.22783 8.54844 9.06920 9.66660 11.13966 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.007447 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.649323 B = 3759.136262 C = 4819.001603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.032 0.968 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.058 3.942 14 N -0.535 5.535 15 C 0.061 3.939 16 C 0.013 3.987 17 O -0.349 6.349 18 C 0.585 3.415 19 F -0.178 7.178 20 F -0.185 7.185 21 F -0.142 7.142 22 C 0.065 3.935 23 H 0.259 0.741 24 H 0.029 0.971 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -13.300 -3.784 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.050 0.950 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.070 4.070 14 N -0.257 5.257 15 C -0.068 4.068 16 C -0.064 4.064 17 O -0.273 6.273 18 C 0.493 3.507 19 F -0.161 7.161 20 F -0.168 7.168 21 F -0.124 7.124 22 C -0.061 4.061 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.753 -13.034 -3.251 14.613 hybrid contribution 1.282 0.822 -1.093 1.875 sum 7.034 -12.211 -4.344 14.747 Atomic orbital electron populations 1.69887 1.05813 1.26220 1.51011 1.24924 0.94809 0.98895 0.95243 0.86654 0.79967 0.83715 0.78019 1.20824 1.21299 1.19914 1.21155 0.92895 0.90619 1.50234 0.92791 1.18696 0.92616 0.90588 0.94634 0.94987 1.21663 1.00051 0.94650 0.98573 1.21668 0.97107 0.96485 1.00227 1.22105 0.95604 0.98898 0.90415 1.62157 1.23166 1.02784 1.37641 1.22438 0.91328 0.96285 0.96789 1.23884 0.93317 0.85588 1.03590 1.88780 1.44564 1.46664 1.47260 1.19853 0.78704 0.74492 0.77616 1.93247 1.82969 1.96096 1.43760 1.93217 1.72737 1.54611 1.96206 1.93274 1.75961 1.48446 1.94670 1.22557 0.95857 0.87499 1.00190 0.93146 0.95243 0.89090 0.93536 0.92042 0.95785 0.92372 0.88812 0.89562 0.91018 0.91210 0.92270 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 11.35 55.43 0.63 -25.04 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.24 8.57 -34.44 -0.30 -14.53 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.35 2.26 -91.69 -0.21 1.14 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 11 C -0.11 -2.65 5.02 -26.61 -0.13 -2.78 16 12 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 13 C 0.06 0.96 5.06 -3.84 -0.02 0.94 16 14 N -0.53 -9.46 4.86 -234.67 -1.14 -10.60 16 15 C 0.06 0.81 5.93 -3.82 -0.02 0.78 16 16 C 0.01 0.17 5.47 37.16 0.20 0.37 16 17 O -0.35 -5.48 7.02 -35.23 -0.25 -5.72 16 18 C 0.59 8.57 3.75 101.05 0.38 8.95 16 19 F -0.18 -2.66 16.86 2.25 0.04 -2.62 16 20 F -0.19 -2.40 16.86 2.25 0.04 -2.36 16 21 F -0.14 -2.26 17.53 2.25 0.04 -2.22 16 22 C 0.07 1.39 3.45 -3.84 -0.01 1.37 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.09 2.42 6.15 -51.93 -0.32 2.11 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.02 0.40 6.65 -51.93 -0.35 0.06 16 29 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 30 H 0.09 0.98 8.06 -51.93 -0.42 0.56 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.91 6.05 -51.93 -0.31 0.60 16 33 H 0.07 0.70 7.73 -51.92 -0.40 0.30 16 34 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 35 H 0.04 0.95 5.58 -51.93 -0.29 0.66 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -28.94 289.41 -6.25 -35.19 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -4.58 Total: -3.14 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.37 Total: -4.52 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.51 Total: -35.63 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.25 Total: -5.72 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.12 Total: -7.20 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.94 -6.25 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.676 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds