Wall clock time and date at job start Mon Mar 30 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99427 * 2 1 4 4 H 1.48505 * 109.47398 * 270.00170 * 3 2 1 5 5 H 1.48503 * 109.47513 * 30.00079 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00443 * 3 2 1 7 7 C 1.37874 * 120.00759 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99734 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50194 * 299.92434 * 9 7 2 11 11 C 1.53119 * 109.50423 * 59.99701 * 9 7 2 12 12 C 1.53119 * 109.16089 * 177.63198 * 11 9 7 13 13 C 1.53032 * 109.28214 * 302.35055 * 12 11 9 14 14 N 1.46849 * 109.52455 * 59.17680 * 13 12 11 15 15 C 1.46890 * 110.99927 * 174.15859 * 14 13 12 16 16 C 1.53009 * 109.46969 * 66.05100 * 15 14 13 17 17 O 1.42899 * 109.47113 * 64.99548 * 16 15 14 18 18 C 1.42900 * 113.99816 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.47006 * 60.00087 * 18 17 16 20 20 F 1.39900 * 109.47309 * 300.00388 * 18 17 16 21 21 F 1.39897 * 109.47274 * 179.97438 * 18 17 16 22 22 C 1.46850 * 111.19660 * 298.26175 * 14 13 12 23 23 H 0.96999 * 120.00945 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.52255 * 57.73200 * 11 9 7 25 25 H 1.09001 * 109.58039 * 297.57434 * 11 9 7 26 26 H 1.09003 * 109.50542 * 182.40368 * 12 11 9 27 27 H 1.08999 * 109.53409 * 62.31254 * 12 11 9 28 28 H 1.09005 * 109.46272 * 299.15900 * 13 12 11 29 29 H 1.09003 * 109.45293 * 179.19060 * 13 12 11 30 30 H 1.09005 * 109.47853 * 306.05037 * 15 14 13 31 31 H 1.09002 * 109.47208 * 186.04277 * 15 14 13 32 32 H 1.08997 * 109.46790 * 304.98996 * 16 15 14 33 33 H 1.09007 * 109.46849 * 184.99508 * 16 15 14 34 34 H 1.08994 * 109.45913 * 181.75918 * 22 14 13 35 35 H 1.08999 * 109.45599 * 301.72167 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0047 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2513 -2.4991 -0.0005 10 1 0.6258 -2.5582 0.8902 11 6 0.3702 -2.5808 -1.2501 12 6 -0.3461 -3.9339 -1.2724 13 6 0.6934 -5.0565 -1.2407 14 7 1.5102 -4.9348 -0.0264 15 6 2.4270 -6.0746 0.1077 16 6 3.4536 -6.0395 -1.0264 17 8 4.2733 -4.8769 -0.8912 18 6 5.2712 -4.7481 -1.9058 19 9 4.6547 -4.6750 -3.1596 20 9 6.1208 -5.8589 -1.8680 21 9 6.0146 -3.5840 -1.6837 22 6 2.2445 -3.6633 -0.0056 23 1 -0.4851 0.8400 0.0004 24 1 0.9910 -2.4826 -2.1407 25 1 -0.3674 -1.7784 -1.2301 26 1 -0.9420 -4.0153 -2.1815 27 1 -0.9972 -4.0160 -0.4021 28 1 1.3349 -4.9825 -2.1188 29 1 0.1860 -6.0213 -1.2419 30 1 1.8608 -7.0046 0.0565 31 1 2.9426 -6.0154 1.0662 32 1 2.9352 -6.0093 -1.9848 33 1 4.0779 -6.9318 -0.9791 34 1 2.8639 -3.6162 0.8900 35 1 2.8787 -3.5958 -0.8895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397598165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:42 Heat of formation + Delta-G solvation = -230.778765 kcal Electronic energy + Delta-G solvation = -22057.542592 eV Core-core repulsion = 18253.141759 eV Total energy + Delta-G solvation = -3804.400833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.20696 -48.95887 -48.89050 -40.52625 -38.59198 -35.67811 -33.70006 -31.65158 -29.90807 -26.94677 -26.41879 -24.99925 -23.28169 -22.52788 -20.52758 -20.39824 -19.96552 -19.55550 -18.42379 -17.06282 -16.68774 -16.36006 -15.89686 -15.73008 -15.60923 -15.49886 -15.33240 -15.09340 -15.07403 -15.03298 -14.73391 -14.32300 -13.91627 -13.78733 -13.24206 -13.12118 -12.87226 -12.78917 -12.58679 -12.41087 -11.95234 -11.73165 -11.40050 -11.30845 -10.81363 -10.62775 -10.35353 -9.05258 -8.06992 -6.20236 0.92103 1.39628 1.40210 1.50809 2.08884 2.43051 2.99483 3.10866 3.18850 3.19599 3.84867 4.01017 4.13267 4.22341 4.33333 4.43243 4.56265 4.72603 4.81123 4.94551 4.97978 5.07241 5.14662 5.19202 5.28272 5.44101 5.56177 5.65439 5.98341 6.16128 6.24429 6.39965 6.50099 6.92770 7.47217 8.97471 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.007447 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.649323 B = 3759.136262 C = 4819.001603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.050 3.950 10 H -0.007 1.007 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.062 3.938 14 N -0.549 5.549 15 C 0.061 3.939 16 C 0.008 3.992 17 O -0.373 6.373 18 C 0.590 3.410 19 F -0.181 7.181 20 F -0.173 7.173 21 F -0.154 7.154 22 C 0.085 3.915 23 H 0.260 0.740 24 H 0.018 0.982 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.027 0.973 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.780 -15.140 -4.337 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.064 0.936 9 C 0.031 3.969 10 H 0.012 0.988 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.065 4.065 14 N -0.272 5.272 15 C -0.067 4.067 16 C -0.067 4.067 17 O -0.297 6.297 18 C 0.498 3.502 19 F -0.163 7.163 20 F -0.155 7.155 21 F -0.135 7.135 22 C -0.042 4.042 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.306 -14.898 -3.805 16.619 hybrid contribution 1.098 1.348 -0.901 1.958 sum 7.404 -13.550 -4.705 16.142 Atomic orbital electron populations 1.70025 1.07027 1.26957 1.51457 1.25679 0.95657 1.02139 0.94937 0.85700 0.78844 0.79791 0.78211 1.20218 1.20645 1.19466 1.21511 0.92784 0.92403 1.50416 0.93576 1.18636 0.93073 0.91641 0.93553 0.98837 1.21455 0.99012 0.96602 0.97189 1.21592 0.97670 0.94799 1.00952 1.22115 0.94869 0.99479 0.90085 1.62022 1.24187 1.02494 1.38482 1.22599 0.91205 0.95768 0.97120 1.24066 0.93541 0.85876 1.03260 1.88734 1.45129 1.48354 1.47519 1.19716 0.78644 0.74445 0.77354 1.93241 1.83049 1.96122 1.43876 1.93238 1.72325 1.53795 1.96143 1.93247 1.76262 1.49292 1.94734 1.22102 0.94501 0.88293 0.99274 0.93103 0.96362 0.92586 0.91249 0.92989 0.95492 0.88221 0.84829 0.89509 0.90771 0.87857 0.93645 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 11.35 21.45 0.24 -54.09 16 2 C 0.01 0.83 5.30 84.65 0.45 1.28 16 3 Si 0.95 45.18 29.54 68.60 2.03 47.20 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.53 -30.66 8.57 25.60 0.22 -30.44 16 8 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 9 C 0.05 2.60 2.26 -11.49 -0.03 2.57 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.10 -5.09 5.02 30.67 0.15 -4.93 16 12 C -0.11 -4.21 6.09 30.64 0.19 -4.03 16 13 C 0.06 1.89 5.06 86.32 0.44 2.33 16 14 N -0.55 -18.36 4.86 -896.37 -4.35 -22.72 16 15 C 0.06 1.41 5.93 86.31 0.51 1.92 16 16 C 0.01 0.19 5.47 71.99 0.39 0.58 16 17 O -0.37 -11.11 7.02 -148.98 -1.05 -12.15 16 18 C 0.59 16.44 3.75 113.37 0.43 16.87 16 19 F -0.18 -5.12 16.86 44.97 0.76 -4.36 16 20 F -0.17 -4.08 16.86 44.97 0.76 -3.32 16 21 F -0.15 -4.81 17.53 44.97 0.79 -4.02 16 22 C 0.09 3.65 3.45 86.32 0.30 3.95 16 23 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 3.10 6.15 -2.39 -0.01 3.08 16 26 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.03 0.82 6.65 -2.38 -0.02 0.81 16 29 H 0.10 2.30 8.06 -2.39 -0.02 2.28 16 30 H 0.13 2.07 8.06 -2.38 -0.02 2.05 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 1.62 6.05 -2.39 -0.01 1.61 16 33 H 0.10 1.61 7.73 -2.38 -0.02 1.60 16 34 H 0.04 2.02 8.12 -2.39 -0.02 2.00 16 35 H 0.04 1.68 5.58 -2.39 -0.01 1.67 16 Total: -1.00 -64.69 289.41 3.32 -61.37 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 1.10 Total: 2.00 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 3.05 Total: -9.90 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -4.11 Total: -76.81 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.05 Total: -12.15 kcal Atomic # 9 Polarization: -14.01 SS G_CDS: 2.30 Total: -11.71 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.69 3.32 -61.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397598165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.410 kcal (2) G-P(sol) polarization free energy of solvation -64.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds