Wall clock time and date at job start Mon Mar 30 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.27909 * 57.91081 * 9 7 2 11 11 C 1.54604 * 110.30967 * 295.71571 * 9 7 2 12 12 C 1.54938 * 102.92068 * 219.12952 * 11 9 7 13 13 N 1.48533 * 103.22943 * 37.41397 * 12 11 9 14 14 C 1.46898 * 111.00229 * 200.28355 * 13 12 11 15 15 C 1.50704 * 109.46686 * 287.39374 * 14 13 12 16 16 C 1.38262 * 119.96469 * 269.72855 * 15 14 13 17 17 C 1.38211 * 120.06916 * 179.72839 * 16 15 14 18 18 C 1.38415 * 120.00037 * 0.54179 * 17 16 15 19 19 F 1.35100 * 120.03426 * 179.75088 * 18 17 16 20 20 C 1.38646 * 119.92689 * 359.73160 * 18 17 16 21 21 F 1.35105 * 120.03265 * 180.02562 * 20 18 17 22 22 C 1.38212 * 119.96685 * 90.00054 * 15 14 13 23 23 C 1.47905 * 105.81998 * 320.79218 * 13 12 11 24 24 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 25 25 H 1.08996 * 110.72357 * 337.48758 * 11 9 7 26 26 H 1.09001 * 110.72203 * 100.77246 * 11 9 7 27 27 H 1.09003 * 110.67067 * 278.97897 * 12 11 9 28 28 H 1.09001 * 110.66781 * 155.84824 * 12 11 9 29 29 H 1.08998 * 109.47339 * 47.39292 * 14 13 12 30 30 H 1.08998 * 109.47446 * 167.40117 * 14 13 12 31 31 H 1.07993 * 119.96388 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.00382 * 180.27585 * 17 16 15 33 33 H 1.08005 * 119.99530 * 359.97438 * 22 15 14 34 34 H 1.09004 * 109.91703 * 265.98132 * 23 13 12 35 35 H 1.08996 * 110.08367 * 144.77043 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5921 -2.5548 -0.8659 11 6 0.4374 -2.6489 1.3066 12 6 0.6021 -4.1515 1.6469 13 7 2.0056 -4.4373 1.2534 14 6 2.2116 -5.8770 1.0467 15 6 2.2129 -6.5805 2.3794 16 6 3.3988 -6.7501 3.0697 17 6 3.4017 -7.3901 4.2947 18 6 2.2181 -7.8719 4.8266 19 9 2.2208 -8.5020 6.0216 20 6 1.0297 -7.7068 4.1317 21 9 -0.1269 -8.1758 4.6491 22 6 1.0294 -7.0605 2.9078 23 6 2.2346 -3.6841 0.0012 24 1 -0.4850 -0.8401 -0.0004 25 1 0.8576 -2.0263 2.0964 26 1 -0.6113 -2.4044 1.1378 27 1 -0.0918 -4.7565 1.0633 28 1 0.4595 -4.3221 2.7140 29 1 1.4075 -6.2739 0.4271 30 1 3.1678 -6.0395 0.5493 31 1 4.3233 -6.3787 2.6530 32 1 4.3280 -7.5180 4.8350 33 1 0.1043 -6.9309 2.3658 34 1 2.0430 -4.3261 -0.8586 35 1 3.2598 -3.3156 -0.0317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397665553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:03 Heat of formation + Delta-G solvation = -84.830198 kcal Electronic energy + Delta-G solvation = -19776.051720 eV Core-core repulsion = 16408.748917 eV Total energy + Delta-G solvation = -3367.302803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.53362 -49.61833 -40.61983 -39.27015 -35.61342 -33.30386 -31.86802 -30.66582 -30.02245 -26.72027 -25.73559 -24.22670 -22.93335 -21.71653 -21.53916 -18.97450 -18.95197 -18.14949 -18.02967 -17.39231 -16.86769 -16.44718 -16.04508 -15.64736 -15.57467 -15.36849 -15.04989 -14.95956 -14.52301 -14.00576 -13.91243 -13.43306 -13.30397 -12.87663 -12.73518 -12.51774 -12.43699 -12.20353 -12.02088 -11.92549 -11.67965 -11.49157 -10.51981 -10.44902 -10.09228 -9.71770 -9.31985 -8.54008 -6.26156 -0.14404 -0.00248 1.56136 1.63489 1.82117 2.28701 2.61240 2.75906 3.16168 3.25069 3.30478 3.52552 3.62797 3.95820 3.99218 4.10456 4.21565 4.29335 4.38976 4.48841 4.63061 4.71328 4.75377 4.83065 4.86984 4.90292 5.03054 5.05126 5.17111 5.35770 5.41824 5.49792 5.72622 6.00176 6.12633 6.18454 6.27909 6.71464 7.52688 8.84931 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033396 B = 0.003968 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.225036 B = 7055.420488 C = 7188.545207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.032 4.032 3 Si 1.111 2.889 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.048 0.952 9 C 0.012 3.988 10 H -0.003 1.003 11 C -0.105 4.105 12 C 0.047 3.953 13 N -0.516 5.516 14 C 0.081 3.919 15 C -0.053 4.053 16 C -0.074 4.074 17 C -0.116 4.116 18 C 0.048 3.952 19 F -0.140 7.140 20 C 0.048 3.952 21 F -0.142 7.142 22 C -0.122 4.122 23 C 0.064 3.936 24 H 0.261 0.739 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.041 0.959 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.526 -16.561 5.658 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.230 4.230 3 Si 0.933 3.067 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.637 4.637 8 H 0.066 0.934 9 C -0.007 4.007 10 H 0.015 0.985 11 C -0.143 4.143 12 C -0.081 4.081 13 N -0.240 5.240 14 C -0.046 4.046 15 C -0.054 4.054 16 C -0.093 4.093 17 C -0.134 4.134 18 C 0.027 3.973 19 F -0.119 7.119 20 C 0.028 3.972 21 F -0.121 7.121 22 C -0.141 4.141 23 C -0.063 4.063 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.182 0.818 32 H 0.191 0.809 33 H 0.165 0.835 34 H 0.060 0.940 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.664 -14.823 6.105 17.361 hybrid contribution -1.181 -1.964 -0.264 2.307 sum 5.483 -16.787 5.841 18.601 Atomic orbital electron populations 1.70909 1.07843 1.30376 1.48767 1.27122 0.96635 1.06181 0.93063 0.83000 0.74153 0.71742 0.77758 1.19568 1.19928 1.21381 1.22369 0.94081 0.92669 1.54558 0.93402 1.19682 0.93807 0.94562 0.92675 0.98540 1.22464 0.98028 0.94955 0.98893 1.23184 0.89142 0.95383 1.00372 1.64717 1.22805 1.06692 1.29782 1.21322 1.03596 0.86991 0.92675 1.19749 0.92538 0.96199 0.96946 1.21291 0.99154 0.95754 0.93082 1.21367 0.96969 0.98249 0.96845 1.17952 0.94471 1.01325 0.83518 1.91492 1.97286 1.80091 1.42995 1.17830 0.80918 1.03128 0.95345 1.91489 1.47051 1.86803 1.86748 1.21088 1.00556 0.98648 0.93814 1.22708 1.00104 0.93867 0.89624 0.92881 0.94276 0.94301 0.93305 0.90466 0.92739 0.87600 0.81850 0.80949 0.83521 0.94038 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 13.45 21.45 0.29 -56.37 16 2 C -0.03 -1.80 5.34 84.66 0.45 -1.34 16 3 Si 1.11 49.78 29.90 68.60 2.05 51.83 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.60 -32.86 8.38 25.60 0.21 -32.65 16 8 H 0.05 2.59 7.34 -2.91 -0.02 2.57 16 9 C 0.01 0.57 2.54 -10.66 -0.03 0.54 16 10 H 0.00 -0.18 7.95 -2.39 -0.02 -0.20 16 11 C -0.10 -4.76 5.57 31.80 0.18 -4.58 16 12 C 0.05 1.63 5.67 86.65 0.49 2.12 16 13 N -0.52 -16.95 5.23 -887.55 -4.65 -21.60 16 14 C 0.08 1.92 4.86 85.56 0.42 2.33 16 15 C -0.05 -1.16 5.16 -19.86 -0.10 -1.26 16 16 C -0.07 -1.35 9.70 22.27 0.22 -1.13 16 17 C -0.12 -2.05 10.02 22.31 0.22 -1.83 16 18 C 0.05 1.09 7.31 22.41 0.16 1.25 16 19 F -0.14 -3.45 17.18 44.97 0.77 -2.68 16 20 C 0.05 1.18 7.31 22.41 0.16 1.34 16 21 F -0.14 -3.86 17.18 44.97 0.77 -3.09 16 22 C -0.12 -2.77 8.81 22.30 0.20 -2.57 16 23 C 0.06 2.47 6.31 86.45 0.55 3.01 16 24 H 0.26 15.66 5.65 -92.70 -0.52 15.14 16 25 H 0.04 1.97 7.86 -2.39 -0.02 1.95 16 26 H 0.04 1.83 7.10 -2.39 -0.02 1.81 16 27 H 0.05 1.54 7.81 -2.39 -0.02 1.52 16 28 H 0.08 2.54 7.85 -2.39 -0.02 2.52 16 29 H 0.05 1.21 7.77 -2.39 -0.02 1.20 16 30 H 0.11 2.10 8.02 -2.39 -0.02 2.08 16 31 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.04 1.42 7.77 -2.39 -0.02 1.40 16 35 H 0.07 2.73 7.39 -2.39 -0.02 2.72 16 Total: -1.00 -64.03 297.93 3.71 -60.32 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.34 Total: 6.35 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 3.13 Total: -34.77 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -4.36 Total: -77.97 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.55 Total: -5.76 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -64.03 3.71 -60.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.509 kcal (2) G-P(sol) polarization free energy of solvation -64.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds