Wall clock time and date at job start Mon Mar 30 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48502 * 109.47205 * 240.00710 * 3 2 1 5 5 H 1.48498 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47092 * 120.00292 * 3 2 1 7 7 C 1.37882 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99583 * 0.27160 * 7 2 1 10 10 H 1.08996 * 110.28679 * 299.04682 * 9 7 2 11 11 C 1.54257 * 110.32521 * 61.17841 * 9 7 2 12 12 C 1.54381 * 105.05715 * 118.89390 * 11 9 7 13 13 N 1.48558 * 104.59756 * 23.85359 * 12 11 9 14 14 C 1.46896 * 111.00033 * 200.95586 * 13 12 11 15 15 C 1.50709 * 109.46885 * 175.64263 * 14 13 12 16 16 C 1.38205 * 119.99688 * 254.52007 * 15 14 13 17 17 C 1.38434 * 119.99753 * 179.81358 * 16 15 14 18 18 F 1.35098 * 120.00075 * 180.20903 * 17 16 15 19 19 C 1.38479 * 119.99528 * 0.42198 * 17 16 15 20 20 C 1.38159 * 120.00019 * 359.83274 * 19 17 16 21 21 C 1.38420 * 119.99835 * 74.79924 * 15 14 13 22 22 F 1.35098 * 120.00255 * 359.95282 * 21 15 14 23 23 C 1.48558 * 104.21922 * 320.51747 * 13 12 11 24 24 H 0.96999 * 119.99406 * 359.97438 * 1 2 3 25 25 H 1.08994 * 110.32296 * 237.78843 * 11 9 7 26 26 H 1.09001 * 110.32158 * 0.02562 * 11 9 7 27 27 H 1.09003 * 110.40922 * 142.63475 * 12 11 9 28 28 H 1.08999 * 110.41345 * 264.95458 * 12 11 9 29 29 H 1.08989 * 109.47515 * 295.64141 * 14 13 12 30 30 H 1.09000 * 109.46921 * 55.64447 * 14 13 12 31 31 H 1.08003 * 120.00349 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.99586 * 179.80841 * 19 17 16 33 33 H 1.08006 * 119.99769 * 179.97438 * 20 19 17 34 34 H 1.09002 * 110.41254 * 280.69994 * 23 13 12 35 35 H 1.09008 * 110.41363 * 158.26516 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0073 10 1 0.6286 -2.5807 0.8837 11 6 0.3844 -2.6109 -1.2785 12 6 0.9178 -3.8559 -2.0194 13 7 1.5551 -4.6782 -0.9589 14 6 2.5215 -5.6228 -1.5347 15 6 3.2234 -6.3624 -0.4248 16 6 4.5302 -6.0478 -0.1034 17 6 5.1737 -6.7245 0.9186 18 9 6.4498 -6.4142 1.2356 19 6 4.5107 -7.7224 1.6130 20 6 3.2061 -8.0403 1.2881 21 6 2.5610 -7.3605 0.2687 22 9 1.2851 -7.6712 -0.0486 23 6 2.2351 -3.6860 -0.0870 24 1 -0.4849 0.8401 0.0004 25 1 -0.6632 -2.7492 -1.0115 26 1 0.5044 -1.7220 -1.8978 27 1 0.0969 -4.4031 -2.4829 28 1 1.6522 -3.5656 -2.7707 29 1 1.9977 -6.3355 -2.1716 30 1 3.2548 -5.0762 -2.1276 31 1 5.0484 -5.2718 -0.6473 32 1 5.0138 -8.2524 2.4083 33 1 2.6892 -8.8190 1.8295 34 1 3.1772 -3.3693 -0.5344 35 1 2.4062 -4.1053 0.9046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397668353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:25 Heat of formation + Delta-G solvation = -65.028196 kcal Electronic energy + Delta-G solvation = -20128.331145 eV Core-core repulsion = 16761.887021 eV Total energy + Delta-G solvation = -3366.444124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.94674 -48.73433 -39.23414 -37.68924 -33.68028 -32.10511 -30.31531 -29.40145 -28.05154 -25.76204 -24.06347 -22.96900 -21.64814 -20.19676 -19.35895 -17.53573 -17.19365 -17.08248 -16.35850 -15.84788 -15.30793 -14.99968 -14.78094 -14.47970 -14.32315 -14.12247 -13.71903 -13.28333 -12.95087 -12.58952 -12.24697 -12.16980 -11.84409 -11.49897 -11.03989 -11.01143 -10.74210 -10.67047 -10.51722 -10.31821 -9.76842 -9.29639 -9.17026 -8.74746 -8.50767 -8.38417 -7.86949 -6.02092 -4.06307 0.93662 0.97272 3.30480 3.30640 3.35768 3.37987 4.08938 4.22902 4.40942 4.45726 4.64365 4.78410 4.91153 5.12287 5.30492 5.47592 5.54879 5.77445 5.80602 5.86243 5.92198 6.04943 6.06593 6.16917 6.25268 6.37878 6.51980 6.75500 6.85881 7.08992 7.17416 7.50240 7.63758 7.68125 7.88024 7.99592 8.45116 8.96383 9.57736 11.07015 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.005338 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.219606 B = 5244.388106 C = 6082.760186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.033 0.967 11 C -0.091 4.091 12 C 0.032 3.968 13 N -0.508 5.508 14 C 0.081 3.919 15 C -0.077 4.077 16 C -0.118 4.118 17 C 0.086 3.914 18 F -0.138 7.138 19 C -0.130 4.130 20 C -0.131 4.131 21 C 0.114 3.886 22 F -0.125 7.125 23 C 0.042 3.958 24 H 0.261 0.739 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.035 0.965 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 -15.099 -0.790 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.129 4.129 12 C -0.095 4.095 13 N -0.232 5.232 14 C -0.047 4.047 15 C -0.078 4.078 16 C -0.137 4.137 17 C 0.066 3.934 18 F -0.117 7.117 19 C -0.149 4.149 20 C -0.150 4.150 21 C 0.093 3.907 22 F -0.103 7.103 23 C -0.085 4.085 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.053 0.947 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.392 -15.293 -0.515 16.583 hybrid contribution 1.118 1.425 -0.410 1.857 sum 7.510 -13.868 -0.924 15.798 Atomic orbital electron populations 1.69977 1.05837 1.26619 1.50014 1.24961 0.94832 0.98959 0.95120 0.86707 0.79647 0.83333 0.78596 1.20349 1.21268 1.20274 1.21151 0.92632 0.90449 1.51339 0.92822 1.19360 0.92291 0.90951 0.94467 0.94908 1.22194 0.98620 0.93851 0.98277 1.23212 0.97580 0.95416 0.93339 1.65550 1.25853 1.15328 1.16515 1.21145 0.94570 0.96070 0.92903 1.19759 0.93501 0.95837 0.98715 1.20979 0.94514 1.00541 0.97672 1.17601 0.80074 0.98036 0.97663 1.91505 1.35751 1.92280 1.92133 1.20914 0.94815 0.98077 1.01098 1.20961 0.94856 1.01474 0.97691 1.17461 0.79987 0.96583 0.96625 1.91532 1.35273 1.91745 1.91789 1.23297 0.97076 0.92699 0.95446 0.92947 0.93512 0.91373 0.91819 0.94854 0.89844 0.93481 0.83952 0.84028 0.83867 0.94661 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 12.34 55.43 0.68 -24.70 16 2 C 0.06 1.75 5.08 -17.82 -0.09 1.66 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.10 8.38 -34.44 -0.29 -14.39 16 8 H 0.05 1.44 7.58 -52.49 -0.40 1.04 16 9 C 0.05 1.22 2.99 -90.39 -0.27 0.95 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.09 -2.13 5.75 -25.35 -0.15 -2.28 16 12 C 0.03 0.62 6.49 -2.18 -0.01 0.60 16 13 N -0.51 -9.64 5.44 -231.41 -1.26 -10.90 16 14 C 0.08 1.25 4.73 -4.97 -0.02 1.23 16 15 C -0.08 -1.10 4.48 -104.56 -0.47 -1.57 16 16 C -0.12 -1.57 9.49 -39.52 -0.38 -1.94 16 17 C 0.09 1.08 7.30 -39.42 -0.29 0.79 16 18 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 19 C -0.13 -1.40 10.02 -39.52 -0.40 -1.79 16 20 C -0.13 -1.47 10.02 -39.53 -0.40 -1.86 16 21 C 0.11 1.57 7.24 -39.43 -0.29 1.29 16 22 F -0.13 -1.90 16.76 2.25 0.04 -1.86 16 23 C 0.04 0.89 5.13 -2.18 -0.01 0.88 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 1.74 7.22 -51.93 -0.38 1.36 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.62 7.91 -51.93 -0.41 0.21 16 29 H 0.08 1.18 8.08 -51.94 -0.42 0.76 16 30 H 0.05 0.69 7.78 -51.93 -0.40 0.29 16 31 H 0.14 1.78 8.00 -52.48 -0.42 1.36 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.04 0.74 7.53 -51.93 -0.39 0.35 16 35 H 0.06 1.22 7.99 -51.92 -0.41 0.80 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -28.72 300.72 -8.52 -37.24 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.48 Total: -2.26 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -3.05 Total: -16.45 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.57 Total: -35.59 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.72 -8.52 -37.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.790 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds