Wall clock time and date at job start Mon Mar 30 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48502 * 109.47205 * 240.00710 * 3 2 1 5 5 H 1.48498 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47092 * 120.00292 * 3 2 1 7 7 C 1.37882 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99719 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99583 * 0.27160 * 7 2 1 10 10 H 1.08996 * 110.28679 * 299.04682 * 9 7 2 11 11 C 1.54257 * 110.32521 * 61.17841 * 9 7 2 12 12 C 1.54381 * 105.05715 * 118.89390 * 11 9 7 13 13 N 1.48558 * 104.59756 * 23.85359 * 12 11 9 14 14 C 1.46896 * 111.00033 * 200.95586 * 13 12 11 15 15 C 1.50709 * 109.46885 * 175.64263 * 14 13 12 16 16 C 1.38205 * 119.99688 * 254.52007 * 15 14 13 17 17 C 1.38434 * 119.99753 * 179.81358 * 16 15 14 18 18 F 1.35098 * 120.00075 * 180.20903 * 17 16 15 19 19 C 1.38479 * 119.99528 * 0.42198 * 17 16 15 20 20 C 1.38159 * 120.00019 * 359.83274 * 19 17 16 21 21 C 1.38420 * 119.99835 * 74.79924 * 15 14 13 22 22 F 1.35098 * 120.00255 * 359.95282 * 21 15 14 23 23 C 1.48558 * 104.21922 * 320.51747 * 13 12 11 24 24 H 0.96999 * 119.99406 * 359.97438 * 1 2 3 25 25 H 1.08994 * 110.32296 * 237.78843 * 11 9 7 26 26 H 1.09001 * 110.32158 * 0.02562 * 11 9 7 27 27 H 1.09003 * 110.40922 * 142.63475 * 12 11 9 28 28 H 1.08999 * 110.41345 * 264.95458 * 12 11 9 29 29 H 1.08989 * 109.47515 * 295.64141 * 14 13 12 30 30 H 1.09000 * 109.46921 * 55.64447 * 14 13 12 31 31 H 1.08003 * 120.00349 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.99586 * 179.80841 * 19 17 16 33 33 H 1.08006 * 119.99769 * 179.97438 * 20 19 17 34 34 H 1.09002 * 110.41254 * 280.69994 * 23 13 12 35 35 H 1.09008 * 110.41363 * 158.26516 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0073 10 1 0.6286 -2.5807 0.8837 11 6 0.3844 -2.6109 -1.2785 12 6 0.9178 -3.8559 -2.0194 13 7 1.5551 -4.6782 -0.9589 14 6 2.5215 -5.6228 -1.5347 15 6 3.2234 -6.3624 -0.4248 16 6 4.5302 -6.0478 -0.1034 17 6 5.1737 -6.7245 0.9186 18 9 6.4498 -6.4142 1.2356 19 6 4.5107 -7.7224 1.6130 20 6 3.2061 -8.0403 1.2881 21 6 2.5610 -7.3605 0.2687 22 9 1.2851 -7.6712 -0.0486 23 6 2.2351 -3.6860 -0.0870 24 1 -0.4849 0.8401 0.0004 25 1 -0.6632 -2.7492 -1.0115 26 1 0.5044 -1.7220 -1.8978 27 1 0.0969 -4.4031 -2.4829 28 1 1.6522 -3.5656 -2.7707 29 1 1.9977 -6.3355 -2.1716 30 1 3.2548 -5.0762 -2.1276 31 1 5.0484 -5.2718 -0.6473 32 1 5.0138 -8.2524 2.4083 33 1 2.6892 -8.8190 1.8295 34 1 3.1772 -3.3693 -0.5344 35 1 2.4062 -4.1053 0.9046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397668353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:24 Heat of formation + Delta-G solvation = -81.258745 kcal Electronic energy + Delta-G solvation = -20129.034955 eV Core-core repulsion = 16761.887021 eV Total energy + Delta-G solvation = -3367.147933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.92928 -49.81551 -40.42144 -39.12628 -35.40287 -33.65015 -31.54028 -30.74320 -29.76158 -27.31225 -25.78453 -23.94855 -22.87204 -21.75963 -21.19164 -18.55118 -18.40653 -18.17920 -18.09614 -17.04507 -16.65782 -16.58382 -16.27780 -15.86713 -15.47437 -15.35072 -14.87463 -14.59348 -14.33109 -14.00961 -13.78583 -13.51155 -13.11707 -12.94374 -12.89077 -12.60689 -12.51755 -12.26675 -12.11610 -11.83706 -11.69699 -11.20468 -10.80494 -10.48683 -10.15991 -9.52888 -9.36183 -8.13790 -6.25211 -0.05153 0.03002 1.41170 1.42282 1.50014 2.32671 2.41935 3.07983 3.17115 3.25555 3.30851 3.51749 3.68249 4.00423 4.09726 4.14887 4.31513 4.34994 4.50275 4.60115 4.64339 4.75745 4.84993 4.95649 5.00000 5.03041 5.07488 5.14896 5.24668 5.32696 5.60265 5.71637 5.80269 5.86607 5.94775 6.17227 6.39108 6.85355 7.42639 8.95059 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.005338 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.219606 B = 5244.388106 C = 6082.760186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.038 3.962 10 H -0.006 1.006 11 C -0.084 4.084 12 C 0.043 3.957 13 N -0.515 5.515 14 C 0.082 3.918 15 C -0.094 4.094 16 C -0.125 4.125 17 C 0.076 3.924 18 F -0.142 7.142 19 C -0.117 4.117 20 C -0.122 4.122 21 C 0.095 3.905 22 F -0.137 7.137 23 C 0.062 3.938 24 H 0.261 0.739 25 H 0.029 0.971 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.145 0.855 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.036 0.964 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.380 -16.286 -0.732 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.012 0.988 11 C -0.122 4.122 12 C -0.085 4.085 13 N -0.238 5.238 14 C -0.045 4.045 15 C -0.095 4.095 16 C -0.145 4.145 17 C 0.057 3.943 18 F -0.120 7.120 19 C -0.135 4.135 20 C -0.140 4.140 21 C 0.075 3.925 22 F -0.115 7.115 23 C -0.066 4.066 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.192 0.808 33 H 0.190 0.810 34 H 0.054 0.946 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.829 -16.496 -0.462 18.265 hybrid contribution 0.682 1.733 -0.377 1.900 sum 8.511 -14.763 -0.840 17.061 Atomic orbital electron populations 1.70108 1.07295 1.27391 1.50798 1.25749 0.95630 1.02406 0.94715 0.85675 0.78422 0.79062 0.78895 1.19433 1.20956 1.19719 1.21476 0.92829 0.91653 1.51247 0.92786 1.19342 0.92951 0.92252 0.93563 0.98802 1.21971 0.97566 0.95052 0.97651 1.23093 0.98527 0.93749 0.93096 1.65486 1.26995 1.14804 1.16564 1.21185 0.94228 0.95497 0.93595 1.19681 0.93967 0.96647 0.99226 1.21033 0.94370 1.00878 0.98176 1.17784 0.80059 0.98621 0.97863 1.91498 1.36010 1.92401 1.92138 1.21274 0.94449 0.96929 1.00875 1.21280 0.94881 1.01306 0.96570 1.17766 0.79766 0.97277 0.97692 1.91501 1.36102 1.91897 1.92036 1.22947 0.95930 0.91675 0.96059 0.92983 0.95201 0.93913 0.89605 0.93676 0.88443 0.92583 0.83769 0.80809 0.80978 0.94578 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.80 12.34 21.45 0.26 -53.54 16 2 C 0.01 0.79 5.08 84.66 0.43 1.23 16 3 Si 0.95 43.62 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.53 -29.61 8.38 25.60 0.21 -29.39 16 8 H 0.05 2.92 7.58 -2.91 -0.02 2.90 16 9 C 0.04 1.97 2.99 -10.65 -0.03 1.94 16 10 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 11 C -0.08 -4.03 5.75 31.49 0.18 -3.84 16 12 C 0.04 1.62 6.49 86.45 0.56 2.18 16 13 N -0.51 -19.08 5.44 -886.05 -4.82 -23.90 16 14 C 0.08 2.41 4.73 85.56 0.40 2.81 16 15 C -0.09 -2.55 4.48 -19.83 -0.09 -2.64 16 16 C -0.13 -3.16 9.49 22.31 0.21 -2.95 16 17 C 0.08 1.75 7.30 22.37 0.16 1.91 16 18 F -0.14 -3.42 17.27 44.97 0.78 -2.64 16 19 C -0.12 -2.13 10.02 22.31 0.22 -1.91 16 20 C -0.12 -2.37 10.02 22.31 0.22 -2.14 16 21 C 0.09 2.46 7.24 22.37 0.16 2.62 16 22 F -0.14 -3.96 16.76 44.97 0.75 -3.21 16 23 C 0.06 2.61 5.13 86.45 0.44 3.05 16 24 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 2.23 7.22 -2.39 -0.02 2.22 16 27 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.04 1.60 7.91 -2.39 -0.02 1.58 16 29 H 0.10 2.57 8.08 -2.39 -0.02 2.55 16 30 H 0.06 1.54 7.78 -2.39 -0.02 1.52 16 31 H 0.14 3.47 8.00 -2.91 -0.02 3.45 16 32 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.04 1.51 7.53 -2.39 -0.02 1.49 16 35 H 0.05 2.33 7.99 -2.38 -0.02 2.32 16 Total: -1.00 -62.55 300.72 3.19 -59.36 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.09 Total: 5.42 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.10 Total: -27.14 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -4.55 Total: -77.44 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 1.53 Total: -5.85 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.55 3.19 -59.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.897 kcal (2) G-P(sol) polarization free energy of solvation -62.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds