Wall clock time and date at job start Mon Mar 30 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.64720 * 61.69646 * 9 7 2 11 11 C 1.54600 * 110.72387 * 298.54353 * 9 7 2 12 12 C 1.53991 * 105.14041 * 219.69015 * 11 9 7 13 13 N 1.47900 * 107.05523 * 358.77189 * 12 11 9 14 14 C 1.46907 * 110.99721 * 145.84609 * 13 12 11 15 15 C 1.50709 * 109.46805 * 69.87317 * 14 13 12 16 16 C 1.38209 * 119.99605 * 105.00195 * 15 14 13 17 17 C 1.38428 * 119.99577 * 179.97438 * 16 15 14 18 18 F 1.35102 * 119.99628 * 179.97438 * 17 16 15 19 19 C 1.38467 * 120.00451 * 0.02562 * 17 16 15 20 20 C 1.38165 * 119.99663 * 359.95513 * 19 17 16 21 21 C 1.38421 * 120.00008 * 284.72242 * 15 14 13 22 22 F 1.35102 * 120.00198 * 0.03094 * 21 15 14 23 23 C 1.48530 * 105.82377 * 25.33817 * 13 12 11 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.30636 * 338.60376 * 11 9 7 26 26 H 1.09004 * 110.30578 * 100.76835 * 11 9 7 27 27 H 1.08994 * 109.91763 * 118.13210 * 12 11 9 28 28 H 1.09005 * 109.91502 * 239.22690 * 12 11 9 29 29 H 1.09000 * 109.47487 * 189.87113 * 14 13 12 30 30 H 1.08992 * 109.47027 * 309.87968 * 14 13 12 31 31 H 1.08002 * 120.00320 * 359.97438 * 16 15 14 32 32 H 1.07999 * 120.00178 * 179.97438 * 19 17 16 33 33 H 1.07999 * 120.00047 * 180.02562 * 20 19 17 34 34 H 1.09001 * 110.66521 * 202.35739 * 23 13 12 35 35 H 1.08995 * 110.66819 * 79.22106 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8956 -0.7102 0.8992 11 6 4.0592 -0.5033 -1.2690 12 6 5.2715 -1.3509 -1.6969 13 7 5.4136 -2.4373 -0.7033 14 6 5.9032 -3.6691 -1.3366 15 6 7.3403 -3.4838 -1.7511 16 6 8.3521 -4.0795 -1.0220 17 6 9.6720 -3.9098 -1.4031 18 9 10.6610 -4.4917 -0.6900 19 6 9.9787 -3.1428 -2.5143 20 6 8.9672 -2.5476 -3.2434 21 6 7.6465 -2.7218 -2.8654 22 9 6.6571 -2.1436 -3.5811 23 6 4.0599 -2.6376 -0.1258 24 1 -0.4850 0.8400 -0.0004 25 1 3.3031 -0.5011 -2.0542 26 1 4.3715 0.5157 -1.0407 27 1 5.0986 -1.7732 -2.6867 28 1 6.1703 -0.7342 -1.7082 29 1 5.8330 -4.4945 -0.6282 30 1 5.2976 -3.8915 -2.2150 31 1 8.1129 -4.6774 -0.1550 32 1 11.0085 -3.0100 -2.8114 33 1 9.2063 -1.9497 -4.1104 34 1 4.1258 -3.1115 0.8535 35 1 3.4380 -3.2275 -0.7989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397668357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:27 Heat of formation + Delta-G solvation = -51.646403 kcal Electronic energy + Delta-G solvation = -20160.503716 eV Core-core repulsion = 16794.639871 eV Total energy + Delta-G solvation = -3365.863846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.12810 -49.09295 -39.29287 -37.97328 -33.76561 -32.19750 -30.59506 -29.76062 -28.44689 -26.05626 -23.75133 -23.19571 -21.97708 -20.27456 -19.54319 -17.87631 -17.33748 -17.22340 -16.59781 -16.26689 -15.64615 -15.13159 -14.92367 -14.63034 -14.45753 -13.90017 -13.79599 -13.54535 -13.03210 -12.69878 -12.63862 -12.45438 -12.08816 -11.78254 -11.28599 -11.16266 -10.97967 -10.64433 -10.50534 -9.96867 -9.76687 -9.53578 -9.29491 -9.00608 -8.69148 -8.55891 -7.92779 -6.08357 -4.07879 0.77855 0.84938 3.16457 3.30224 3.39099 3.42658 3.95061 4.04961 4.32840 4.42677 4.49319 4.62469 4.80329 4.95844 5.22797 5.27104 5.44059 5.56047 5.69314 5.73370 5.79353 5.79887 5.88952 6.04108 6.08569 6.20573 6.33741 6.53720 6.61233 6.76627 6.80703 7.01316 7.28632 7.44713 7.56381 7.79814 8.50638 8.94129 9.54543 11.04710 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.004639 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.863163 B = 6034.446682 C = 6276.115341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.294 1.294 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.039 0.961 11 C -0.142 4.142 12 C 0.026 3.974 13 N -0.519 5.519 14 C 0.081 3.919 15 C -0.069 4.069 16 C -0.112 4.112 17 C 0.087 3.913 18 F -0.138 7.138 19 C -0.132 4.132 20 C -0.126 4.126 21 C 0.096 3.904 22 F -0.125 7.125 23 C 0.052 3.948 24 H 0.264 0.736 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.123 -7.108 -6.001 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.221 1.221 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.003 4.003 10 H 0.057 0.943 11 C -0.180 4.180 12 C -0.102 4.102 13 N -0.243 5.243 14 C -0.047 4.047 15 C -0.071 4.071 16 C -0.132 4.132 17 C 0.067 3.933 18 F -0.117 7.117 19 C -0.151 4.151 20 C -0.145 4.145 21 C 0.076 3.924 22 F -0.103 7.103 23 C -0.074 4.074 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.321 -6.863 -5.597 21.254 hybrid contribution -0.122 0.804 -0.702 1.074 sum 19.200 -6.059 -6.300 21.095 Atomic orbital electron populations 1.69903 1.06303 1.26976 1.50811 1.24964 0.94621 0.99015 0.94287 0.86911 0.80149 0.83605 0.78497 1.20338 1.18814 1.22060 1.20962 0.88459 0.94522 1.51130 0.90812 1.20036 0.96189 0.90681 0.93347 0.94307 1.22926 0.95963 0.98019 1.01081 1.23323 0.98590 0.93671 0.94572 1.64855 1.26127 1.04072 1.29221 1.21177 0.89634 0.95058 0.98834 1.19793 0.97149 0.96680 0.93463 1.20914 0.89977 1.01471 1.00792 1.17638 0.85123 0.97682 0.92829 1.91508 1.60514 1.82425 1.77206 1.20923 1.00583 0.98597 0.95004 1.20962 0.90425 1.01547 1.01548 1.17597 0.85257 0.97034 0.92496 1.91487 1.59750 1.82127 1.76977 1.23217 0.85966 0.99889 0.98338 0.92654 0.91187 0.93354 0.92211 0.92160 0.89365 0.93048 0.83656 0.83982 0.83828 0.91072 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 2 C 0.07 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.88 21.90 24.73 -169.99 -4.20 17.70 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.26 -6.36 6.38 56.52 0.36 -6.00 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 7 C -0.51 -14.27 9.00 -34.44 -0.31 -14.58 16 8 H 0.07 2.21 8.03 -52.49 -0.42 1.78 16 9 C 0.02 0.40 2.46 -89.91 -0.22 0.18 16 10 H 0.04 0.96 7.36 -51.93 -0.38 0.57 16 11 C -0.14 -3.10 4.69 -25.37 -0.12 -3.21 16 12 C 0.03 0.48 4.73 -2.76 -0.01 0.47 16 13 N -0.52 -9.21 5.26 -231.89 -1.22 -10.43 16 14 C 0.08 1.16 4.89 -4.97 -0.02 1.13 16 15 C -0.07 -0.89 5.35 -104.56 -0.56 -1.45 16 16 C -0.11 -1.26 9.65 -39.52 -0.38 -1.64 16 17 C 0.09 0.93 7.30 -39.43 -0.29 0.64 16 18 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 19 C -0.13 -1.23 10.02 -39.52 -0.40 -1.63 16 20 C -0.13 -1.26 10.02 -39.52 -0.40 -1.66 16 21 C 0.10 1.21 6.54 -39.43 -0.26 0.95 16 22 F -0.13 -1.77 12.81 2.25 0.03 -1.74 16 23 C 0.05 1.04 5.95 -1.90 -0.01 1.03 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.07 1.61 7.80 -51.93 -0.40 1.20 16 26 H 0.05 1.05 5.94 -51.93 -0.31 0.75 16 27 H 0.06 1.06 5.18 -51.93 -0.27 0.80 16 28 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 29 H 0.09 1.10 7.92 -51.93 -0.41 0.68 16 30 H 0.05 0.74 7.75 -51.93 -0.40 0.34 16 31 H 0.15 1.42 8.00 -52.49 -0.42 1.00 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.04 0.89 7.92 -51.93 -0.41 0.48 16 LS Contribution 286.82 15.07 4.32 4.32 Total: -1.00 -30.15 286.82 -7.61 -37.75 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -4.27 Total: -1.61 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.07 Total: -17.77 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.45 Total: -37.17 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.07 Total: -3.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.20 Total: 17.70 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.15 -7.61 -37.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.894 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds