Wall clock time and date at job start Mon Mar 30 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.64720 * 61.69646 * 9 7 2 11 11 C 1.54600 * 110.72387 * 298.54353 * 9 7 2 12 12 C 1.53991 * 105.14041 * 219.69015 * 11 9 7 13 13 N 1.47900 * 107.05523 * 358.77189 * 12 11 9 14 14 C 1.46907 * 110.99721 * 145.84609 * 13 12 11 15 15 C 1.50709 * 109.46805 * 69.87317 * 14 13 12 16 16 C 1.38209 * 119.99605 * 105.00195 * 15 14 13 17 17 C 1.38428 * 119.99577 * 179.97438 * 16 15 14 18 18 F 1.35102 * 119.99628 * 179.97438 * 17 16 15 19 19 C 1.38467 * 120.00451 * 0.02562 * 17 16 15 20 20 C 1.38165 * 119.99663 * 359.95513 * 19 17 16 21 21 C 1.38421 * 120.00008 * 284.72242 * 15 14 13 22 22 F 1.35102 * 120.00198 * 0.03094 * 21 15 14 23 23 C 1.48530 * 105.82377 * 25.33817 * 13 12 11 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.30636 * 338.60376 * 11 9 7 26 26 H 1.09004 * 110.30578 * 100.76835 * 11 9 7 27 27 H 1.08994 * 109.91763 * 118.13210 * 12 11 9 28 28 H 1.09005 * 109.91502 * 239.22690 * 12 11 9 29 29 H 1.09000 * 109.47487 * 189.87113 * 14 13 12 30 30 H 1.08992 * 109.47027 * 309.87968 * 14 13 12 31 31 H 1.08002 * 120.00320 * 359.97438 * 16 15 14 32 32 H 1.07999 * 120.00178 * 179.97438 * 19 17 16 33 33 H 1.07999 * 120.00047 * 180.02562 * 20 19 17 34 34 H 1.09001 * 110.66521 * 202.35739 * 23 13 12 35 35 H 1.08995 * 110.66819 * 79.22106 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8956 -0.7102 0.8992 11 6 4.0592 -0.5033 -1.2690 12 6 5.2715 -1.3509 -1.6969 13 7 5.4136 -2.4373 -0.7033 14 6 5.9032 -3.6691 -1.3366 15 6 7.3403 -3.4838 -1.7511 16 6 8.3521 -4.0795 -1.0220 17 6 9.6720 -3.9098 -1.4031 18 9 10.6610 -4.4917 -0.6900 19 6 9.9787 -3.1428 -2.5143 20 6 8.9672 -2.5476 -3.2434 21 6 7.6465 -2.7218 -2.8654 22 9 6.6571 -2.1436 -3.5811 23 6 4.0599 -2.6376 -0.1258 24 1 -0.4850 0.8400 -0.0004 25 1 3.3031 -0.5011 -2.0542 26 1 4.3715 0.5157 -1.0407 27 1 5.0986 -1.7732 -2.6867 28 1 6.1703 -0.7342 -1.7082 29 1 5.8330 -4.4945 -0.6282 30 1 5.2976 -3.8915 -2.2150 31 1 8.1129 -4.6774 -0.1550 32 1 11.0085 -3.0100 -2.8114 33 1 9.2063 -1.9497 -4.1104 34 1 4.1258 -3.1115 0.8535 35 1 3.4380 -3.2275 -0.7989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397668357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:27 Heat of formation + Delta-G solvation = -70.660783 kcal Electronic energy + Delta-G solvation = -20161.328242 eV Core-core repulsion = 16794.639871 eV Total energy + Delta-G solvation = -3366.688371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.10539 -49.91489 -40.36302 -39.29632 -35.39641 -33.86891 -31.78683 -30.83019 -30.11505 -27.43144 -25.49531 -24.05766 -23.07798 -21.65319 -21.35793 -18.89084 -18.64735 -18.22350 -18.03667 -17.45526 -16.65212 -16.61538 -16.30337 -15.76112 -15.55896 -15.32865 -14.95137 -14.75796 -14.58060 -14.12489 -13.88737 -13.71068 -13.41075 -12.96668 -12.90325 -12.68657 -12.40404 -12.28260 -12.00238 -11.73313 -11.59440 -11.32977 -11.03894 -10.74636 -10.17033 -9.61086 -9.29773 -8.31354 -6.35067 -0.07812 0.04864 1.32167 1.35423 1.45958 2.31850 2.33111 3.03645 3.07645 3.19702 3.24863 3.51525 3.67531 3.93941 3.99314 4.07030 4.14527 4.32926 4.38908 4.50412 4.60053 4.75901 4.79167 4.86010 4.96490 5.02382 5.03658 5.06715 5.11738 5.16432 5.26888 5.57560 5.60392 5.78865 5.89701 6.08982 6.30820 6.70799 7.30979 8.85273 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035351 B = 0.004639 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.863163 B = 6034.446682 C = 6276.115341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.249 1.249 6 H -0.293 1.293 7 C -0.516 4.516 8 H 0.037 0.963 9 C 0.010 3.990 10 H 0.033 0.967 11 C -0.141 4.141 12 C 0.037 3.963 13 N -0.518 5.518 14 C 0.081 3.919 15 C -0.085 4.085 16 C -0.113 4.113 17 C 0.080 3.920 18 F -0.140 7.140 19 C -0.119 4.119 20 C -0.119 4.119 21 C 0.076 3.924 22 F -0.139 7.139 23 C 0.061 3.939 24 H 0.266 0.734 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.345 -6.813 -6.574 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.180 4.180 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.173 1.173 6 H -0.219 1.219 7 C -0.554 4.554 8 H 0.055 0.945 9 C -0.009 4.009 10 H 0.051 0.949 11 C -0.179 4.179 12 C -0.091 4.091 13 N -0.242 5.242 14 C -0.046 4.046 15 C -0.087 4.087 16 C -0.132 4.132 17 C 0.061 3.939 18 F -0.119 7.119 19 C -0.138 4.138 20 C -0.137 4.137 21 C 0.056 3.944 22 F -0.117 7.117 23 C -0.066 4.066 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.065 0.935 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.187 0.813 34 H 0.100 0.900 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 22.570 -6.588 -6.176 24.309 hybrid contribution -1.096 0.596 -0.525 1.353 sum 21.474 -5.992 -6.701 23.280 Atomic orbital electron populations 1.70042 1.08134 1.28041 1.52727 1.25794 0.95315 1.02799 0.94077 0.85929 0.79281 0.79009 0.79192 1.19083 1.17278 1.21947 1.21236 0.90927 0.93114 1.50108 0.94483 1.19970 0.93376 0.93587 0.93987 0.94926 1.22813 0.96936 0.98712 0.99466 1.23242 0.97307 0.93560 0.94967 1.64830 1.24159 1.05580 1.29670 1.21216 0.90659 0.93837 0.98917 1.19645 0.96333 0.98272 0.94439 1.21013 0.90046 1.01258 1.00907 1.17782 0.84868 0.97977 0.93316 1.91509 1.60480 1.82527 1.77362 1.21268 1.01948 0.96827 0.93726 1.21234 0.89251 1.01179 1.02084 1.17913 0.86045 0.97683 0.92779 1.91437 1.60525 1.82481 1.77278 1.23017 0.87093 0.97410 0.99055 0.92503 0.92951 0.93051 0.91541 0.90978 0.87650 0.93525 0.82595 0.80974 0.81340 0.90001 0.94691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.02 1.02 5.46 84.65 0.46 1.48 16 3 Si 0.94 45.20 24.73 68.60 1.70 46.90 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.25 -11.29 6.38 99.48 0.63 -10.65 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.52 -29.49 9.00 25.60 0.23 -29.26 16 8 H 0.04 2.32 8.03 -2.91 -0.02 2.30 16 9 C 0.01 0.48 2.46 -10.33 -0.03 0.46 16 10 H 0.03 1.58 7.36 -2.39 -0.02 1.56 16 11 C -0.14 -6.03 4.69 31.47 0.15 -5.88 16 12 C 0.04 1.30 4.73 86.45 0.41 1.71 16 13 N -0.52 -17.60 5.26 -887.56 -4.66 -22.27 16 14 C 0.08 2.19 4.89 85.56 0.42 2.60 16 15 C -0.09 -2.01 5.35 -19.82 -0.11 -2.11 16 16 C -0.11 -2.27 9.65 22.31 0.22 -2.05 16 17 C 0.08 1.47 7.30 22.37 0.16 1.64 16 18 F -0.14 -2.71 17.27 44.97 0.78 -1.93 16 19 C -0.12 -1.76 10.02 22.31 0.22 -1.54 16 20 C -0.12 -1.97 10.02 22.31 0.22 -1.74 16 21 C 0.08 1.73 6.54 22.37 0.15 1.87 16 22 F -0.14 -3.68 12.81 44.97 0.58 -3.10 16 23 C 0.06 2.42 5.95 86.65 0.52 2.93 16 24 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 25 H 0.05 2.39 7.80 -2.39 -0.02 2.38 16 26 H 0.05 2.14 5.94 -2.39 -0.01 2.12 16 27 H 0.07 2.28 5.18 -2.39 -0.01 2.27 16 28 H 0.07 2.40 7.69 -2.38 -0.02 2.39 16 29 H 0.11 2.43 7.92 -2.39 -0.02 2.41 16 30 H 0.05 1.30 7.75 -2.39 -0.02 1.28 16 31 H 0.16 2.68 8.00 -2.91 -0.02 2.65 16 32 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.03 1.42 7.92 -2.39 -0.02 1.40 16 Total: -1.00 -65.68 286.82 2.73 -62.95 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.03 Total: 6.63 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 3.02 Total: -29.88 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -4.37 Total: -81.55 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 1.35 Total: -5.03 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.70 Total: 46.90 kcal Total: -65.68 2.73 -62.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.715 kcal (2) G-P(sol) polarization free energy of solvation -65.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds