Wall clock time and date at job start Mon Mar 30 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.64720 * 61.69646 * 9 7 2 11 11 C 1.54600 * 110.72387 * 298.54353 * 9 7 2 12 12 C 1.53991 * 105.14041 * 219.69015 * 11 9 7 13 13 N 1.47900 * 107.05523 * 358.77189 * 12 11 9 14 14 C 1.46907 * 110.99721 * 145.84609 * 13 12 11 15 15 C 1.50709 * 109.46805 * 69.87317 * 14 13 12 16 16 C 1.38254 * 119.99797 * 105.00114 * 15 14 13 17 17 C 1.38208 * 120.07214 * 179.97438 * 16 15 14 18 18 C 1.38254 * 120.06907 * 0.02562 * 17 16 15 19 19 C 1.38366 * 120.00189 * 0.02562 * 18 17 16 20 20 F 1.35105 * 120.03797 * 180.02562 * 19 18 17 21 21 C 1.38361 * 120.00165 * 284.72660 * 15 14 13 22 22 F 1.35107 * 120.03543 * 359.97438 * 21 15 14 23 23 C 1.48530 * 105.82377 * 25.33817 * 13 12 11 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.30636 * 338.60376 * 11 9 7 26 26 H 1.09004 * 110.30578 * 100.76835 * 11 9 7 27 27 H 1.08994 * 109.91763 * 118.13210 * 12 11 9 28 28 H 1.09005 * 109.91502 * 239.22690 * 12 11 9 29 29 H 1.09000 * 109.47487 * 189.87113 * 14 13 12 30 30 H 1.08992 * 109.47027 * 309.87968 * 14 13 12 31 31 H 1.08007 * 119.96457 * 0.02562 * 16 15 14 32 32 H 1.07999 * 119.96986 * 180.02562 * 17 16 15 33 33 H 1.08006 * 120.00203 * 180.02562 * 18 17 16 34 34 H 1.09001 * 110.66521 * 202.35739 * 23 13 12 35 35 H 1.08995 * 110.66819 * 79.22106 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8956 -0.7102 0.8992 11 6 4.0592 -0.5033 -1.2690 12 6 5.2715 -1.3509 -1.6969 13 7 5.4136 -2.4373 -0.7033 14 6 5.9032 -3.6691 -1.3366 15 6 7.3403 -3.4838 -1.7511 16 6 8.3524 -4.0797 -1.0218 17 6 9.6708 -3.9112 -1.4009 18 6 9.9803 -3.1460 -2.5099 19 6 8.9698 -2.5474 -3.2414 20 9 9.2714 -1.7999 -4.3257 21 6 7.6464 -2.7221 -2.8649 22 9 6.6575 -2.1444 -3.5817 23 6 4.0599 -2.6376 -0.1258 24 1 -0.4850 0.8400 -0.0004 25 1 3.3031 -0.5011 -2.0542 26 1 4.3715 0.5157 -1.0407 27 1 5.0986 -1.7732 -2.6867 28 1 6.1703 -0.7342 -1.7082 29 1 5.8330 -4.4945 -0.6282 30 1 5.2976 -3.8915 -2.2150 31 1 8.1125 -4.6782 -0.1553 32 1 10.4601 -4.3778 -0.8302 33 1 11.0109 -3.0154 -2.8054 34 1 4.1258 -3.1115 0.8535 35 1 3.4380 -3.2275 -0.7989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397698100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:07 Heat of formation + Delta-G solvation = -50.314101 kcal Electronic energy + Delta-G solvation = -20322.843423 eV Core-core repulsion = 16957.037351 eV Total energy + Delta-G solvation = -3365.806073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.57522 -48.65998 -39.36121 -37.97695 -33.71199 -32.10778 -30.44776 -30.03334 -28.43812 -26.05139 -23.77444 -22.93049 -22.16650 -20.26553 -19.53813 -17.99511 -17.35855 -17.00059 -16.58314 -16.52463 -15.50265 -15.12690 -14.97609 -14.76680 -14.43660 -14.01659 -13.70850 -13.63407 -12.83134 -12.69077 -12.48460 -12.23741 -12.19072 -11.83452 -11.32980 -11.16389 -11.03248 -10.64307 -10.49661 -9.96136 -9.75991 -9.51246 -9.07801 -8.99050 -8.85916 -8.55247 -7.93087 -6.07852 -4.07348 0.80152 0.82576 3.19508 3.31322 3.39872 3.43422 3.66376 4.24365 4.35226 4.43382 4.52909 4.60295 4.83782 4.90535 5.24530 5.29741 5.45480 5.58515 5.61663 5.73865 5.79910 5.81854 5.95441 6.05425 6.15561 6.21397 6.34757 6.54207 6.60953 6.77319 6.81437 7.02030 7.29039 7.45008 7.56722 7.80388 8.51093 8.94583 9.55138 11.05199 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.005018 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.026976 B = 5578.315370 C = 6010.789554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.294 1.294 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.039 0.961 11 C -0.142 4.142 12 C 0.026 3.974 13 N -0.518 5.518 14 C 0.081 3.919 15 C -0.071 4.071 16 C -0.088 4.088 17 C -0.102 4.102 18 C -0.134 4.134 19 C 0.064 3.936 20 F -0.132 7.132 21 C 0.073 3.927 22 F -0.119 7.119 23 C 0.053 3.947 24 H 0.264 0.736 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.071 0.929 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.820 -8.486 -4.126 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.220 1.220 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.002 4.002 10 H 0.057 0.943 11 C -0.180 4.180 12 C -0.102 4.102 13 N -0.242 5.242 14 C -0.047 4.047 15 C -0.073 4.073 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.153 4.153 19 C 0.044 3.956 20 F -0.110 7.110 21 C 0.053 3.947 22 F -0.098 7.098 23 C -0.074 4.074 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.990 -8.185 -3.800 21.933 hybrid contribution -0.259 1.089 -1.093 1.565 sum 19.731 -7.096 -4.893 21.532 Atomic orbital electron populations 1.69902 1.06298 1.26978 1.50810 1.24961 0.94619 0.99008 0.94277 0.86918 0.80149 0.83619 0.78527 1.20341 1.18804 1.22044 1.20959 0.88452 0.94518 1.51140 0.90803 1.20036 0.96193 0.90683 0.93321 0.94294 1.22928 0.95938 0.98025 1.01099 1.23315 0.98611 0.93696 0.94547 1.64859 1.26116 1.04059 1.29196 1.21183 0.89673 0.95054 0.98791 1.19917 0.97899 0.96524 0.92918 1.21043 0.91445 0.99078 0.99145 1.21050 0.96875 0.98081 0.96004 1.21039 0.98815 0.99037 0.96438 1.17700 0.92177 0.97692 0.88044 1.91522 1.93688 1.74094 1.51715 1.17616 0.83730 0.99328 0.94061 1.91498 1.59181 1.82190 1.76896 1.23217 0.85980 0.99885 0.98324 0.92652 0.91181 0.93344 0.92302 0.92225 0.89179 0.93210 0.84161 0.84336 0.84008 0.91037 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 2 C 0.07 2.11 5.46 -17.82 -0.10 2.01 16 3 Si 0.88 22.09 24.73 -169.99 -4.20 17.89 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.26 -6.41 6.38 56.52 0.36 -6.05 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.51 -14.33 9.00 -34.44 -0.31 -14.64 16 8 H 0.07 2.21 8.03 -52.49 -0.42 1.79 16 9 C 0.02 0.41 2.46 -89.91 -0.22 0.19 16 10 H 0.04 0.96 7.36 -51.93 -0.38 0.58 16 11 C -0.14 -3.16 4.69 -25.37 -0.12 -3.28 16 12 C 0.03 0.49 4.73 -2.76 -0.01 0.48 16 13 N -0.52 -9.27 5.26 -231.89 -1.22 -10.49 16 14 C 0.08 1.16 4.89 -4.97 -0.02 1.13 16 15 C -0.07 -0.91 5.35 -104.57 -0.56 -1.47 16 16 C -0.09 -0.87 9.66 -39.59 -0.38 -1.25 16 17 C -0.10 -0.84 10.04 -39.59 -0.40 -1.23 16 18 C -0.13 -1.26 10.02 -39.53 -0.40 -1.66 16 19 C 0.06 0.80 7.31 -39.37 -0.29 0.51 16 20 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 21 C 0.07 1.03 6.54 -39.37 -0.26 0.77 16 22 F -0.12 -1.91 12.73 2.25 0.03 -1.89 16 23 C 0.05 1.05 5.95 -1.90 -0.01 1.04 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.07 1.64 7.80 -51.93 -0.40 1.24 16 26 H 0.05 1.08 5.94 -51.93 -0.31 0.77 16 27 H 0.06 1.10 5.18 -51.93 -0.27 0.83 16 28 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 29 H 0.09 1.08 7.92 -51.93 -0.41 0.67 16 30 H 0.05 0.74 7.75 -51.93 -0.40 0.33 16 31 H 0.14 1.07 8.00 -52.48 -0.42 0.65 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.04 0.89 7.92 -51.93 -0.41 0.48 16 LS Contribution 286.71 15.07 4.32 4.32 Total: -1.00 -30.93 286.71 -7.61 -38.54 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -4.27 Total: -2.38 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -3.08 Total: -17.39 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.45 Total: -37.35 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.20 Total: 17.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.93 -7.61 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397698100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.773 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds