Wall clock time and date at job start Mon Mar 30 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.64720 * 61.69646 * 9 7 2 11 11 C 1.54600 * 110.72387 * 298.54353 * 9 7 2 12 12 C 1.53991 * 105.14041 * 219.69015 * 11 9 7 13 13 N 1.47900 * 107.05523 * 358.77189 * 12 11 9 14 14 C 1.46907 * 110.99721 * 145.84609 * 13 12 11 15 15 C 1.50709 * 109.46805 * 69.87317 * 14 13 12 16 16 C 1.38254 * 119.99797 * 105.00114 * 15 14 13 17 17 C 1.38208 * 120.07214 * 179.97438 * 16 15 14 18 18 C 1.38254 * 120.06907 * 0.02562 * 17 16 15 19 19 C 1.38366 * 120.00189 * 0.02562 * 18 17 16 20 20 F 1.35105 * 120.03797 * 180.02562 * 19 18 17 21 21 C 1.38361 * 120.00165 * 284.72660 * 15 14 13 22 22 F 1.35107 * 120.03543 * 359.97438 * 21 15 14 23 23 C 1.48530 * 105.82377 * 25.33817 * 13 12 11 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09002 * 110.30636 * 338.60376 * 11 9 7 26 26 H 1.09004 * 110.30578 * 100.76835 * 11 9 7 27 27 H 1.08994 * 109.91763 * 118.13210 * 12 11 9 28 28 H 1.09005 * 109.91502 * 239.22690 * 12 11 9 29 29 H 1.09000 * 109.47487 * 189.87113 * 14 13 12 30 30 H 1.08992 * 109.47027 * 309.87968 * 14 13 12 31 31 H 1.08007 * 119.96457 * 0.02562 * 16 15 14 32 32 H 1.07999 * 119.96986 * 180.02562 * 17 16 15 33 33 H 1.08006 * 120.00203 * 180.02562 * 18 17 16 34 34 H 1.09001 * 110.66521 * 202.35739 * 23 13 12 35 35 H 1.08995 * 110.66819 * 79.22106 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8956 -0.7102 0.8992 11 6 4.0592 -0.5033 -1.2690 12 6 5.2715 -1.3509 -1.6969 13 7 5.4136 -2.4373 -0.7033 14 6 5.9032 -3.6691 -1.3366 15 6 7.3403 -3.4838 -1.7511 16 6 8.3524 -4.0797 -1.0218 17 6 9.6708 -3.9112 -1.4009 18 6 9.9803 -3.1460 -2.5099 19 6 8.9698 -2.5474 -3.2414 20 9 9.2714 -1.7999 -4.3257 21 6 7.6464 -2.7221 -2.8649 22 9 6.6575 -2.1444 -3.5817 23 6 4.0599 -2.6376 -0.1258 24 1 -0.4850 0.8400 -0.0004 25 1 3.3031 -0.5011 -2.0542 26 1 4.3715 0.5157 -1.0407 27 1 5.0986 -1.7732 -2.6867 28 1 6.1703 -0.7342 -1.7082 29 1 5.8330 -4.4945 -0.6282 30 1 5.2976 -3.8915 -2.2150 31 1 8.1125 -4.6782 -0.1553 32 1 10.4601 -4.3778 -0.8302 33 1 11.0109 -3.0154 -2.8054 34 1 4.1258 -3.1115 0.8535 35 1 3.4380 -3.2275 -0.7989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397698100.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:07 Heat of formation + Delta-G solvation = -70.523412 kcal Electronic energy + Delta-G solvation = -20323.719765 eV Core-core repulsion = 16957.037351 eV Total energy + Delta-G solvation = -3366.682414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.58277 -49.66552 -40.40383 -39.32142 -35.38346 -33.80831 -31.43175 -31.24480 -30.13914 -27.42810 -25.51370 -23.79122 -23.28750 -21.67310 -21.36786 -19.01235 -18.68852 -18.32799 -17.83311 -17.66248 -16.86906 -16.61920 -16.09440 -15.77953 -15.69901 -15.49868 -15.05858 -14.85821 -14.64243 -14.00678 -13.98983 -13.50187 -13.11112 -12.99651 -12.84932 -12.69494 -12.46899 -12.27285 -12.15059 -11.74599 -11.62075 -11.35303 -11.05902 -10.76139 -9.97644 -9.71624 -9.35061 -8.32628 -6.35984 -0.02914 0.01536 1.30840 1.33395 1.43922 2.31470 2.39278 2.81905 3.02491 3.17565 3.34081 3.51819 3.76433 3.91071 3.95146 4.10401 4.23516 4.30287 4.39487 4.49966 4.60339 4.74481 4.81171 4.84623 4.92482 5.01591 5.04963 5.08530 5.20787 5.24617 5.36503 5.56274 5.58795 5.81119 5.87402 6.08121 6.29535 6.69912 7.30017 8.83959 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.005018 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.026976 B = 5578.315370 C = 6010.789554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.018 3.982 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.248 1.248 6 H -0.291 1.291 7 C -0.515 4.515 8 H 0.039 0.961 9 C 0.011 3.989 10 H 0.035 0.965 11 C -0.141 4.141 12 C 0.038 3.962 13 N -0.515 5.515 14 C 0.081 3.919 15 C -0.089 4.089 16 C -0.081 4.081 17 C -0.085 4.085 18 C -0.123 4.123 19 C 0.041 3.959 20 F -0.145 7.145 21 C 0.040 3.960 22 F -0.142 7.142 23 C 0.062 3.938 24 H 0.266 0.734 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.038 0.962 31 H 0.168 0.832 32 H 0.182 0.818 33 H 0.171 0.829 34 H 0.088 0.912 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.438 -9.285 -3.219 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.179 4.179 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.172 1.172 6 H -0.217 1.217 7 C -0.553 4.553 8 H 0.057 0.943 9 C -0.008 4.008 10 H 0.053 0.947 11 C -0.180 4.180 12 C -0.090 4.090 13 N -0.239 5.239 14 C -0.047 4.047 15 C -0.090 4.090 16 C -0.099 4.099 17 C -0.103 4.103 18 C -0.141 4.141 19 C 0.021 3.979 20 F -0.124 7.124 21 C 0.020 3.980 22 F -0.121 7.121 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.056 0.944 31 H 0.185 0.815 32 H 0.200 0.800 33 H 0.189 0.811 34 H 0.106 0.894 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 23.633 -9.002 -2.897 25.454 hybrid contribution -1.338 1.204 -1.361 2.257 sum 22.295 -7.798 -4.258 24.000 Atomic orbital electron populations 1.70035 1.08066 1.28015 1.52738 1.25769 0.95301 1.02691 0.94131 0.85963 0.79411 0.79246 0.78999 1.19573 1.17163 1.21750 1.21238 0.90896 0.93145 1.50007 0.94294 1.19977 0.93409 0.93697 0.93766 0.94672 1.22823 0.96787 0.98676 0.99700 1.23181 0.97140 0.93788 0.94897 1.64839 1.24220 1.05480 1.29319 1.21262 0.90623 0.93950 0.98831 1.19882 0.97610 0.98008 0.93511 1.21435 0.91400 0.98020 0.99075 1.21553 0.97250 0.96385 0.95088 1.21479 0.99376 0.97485 0.95798 1.18049 0.92473 0.98778 0.88560 1.91483 1.93705 1.74649 1.52535 1.18020 0.84028 1.00851 0.95094 1.91419 1.60223 1.82860 1.77559 1.23032 0.86971 0.97269 0.99256 0.92498 0.93161 0.93179 0.92215 0.91626 0.86514 0.94366 0.81458 0.80027 0.81143 0.89377 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 2 C 0.02 1.09 5.46 84.65 0.46 1.55 16 3 Si 0.94 45.84 24.73 68.60 1.70 47.53 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.25 -11.39 6.38 99.48 0.63 -10.76 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.51 -29.56 9.00 25.60 0.23 -29.33 16 8 H 0.04 2.44 8.03 -2.91 -0.02 2.42 16 9 C 0.01 0.52 2.46 -10.33 -0.03 0.50 16 10 H 0.04 1.70 7.36 -2.39 -0.02 1.68 16 11 C -0.14 -6.28 4.69 31.47 0.15 -6.13 16 12 C 0.04 1.42 4.73 86.45 0.41 1.83 16 13 N -0.51 -17.63 5.26 -887.56 -4.66 -22.29 16 14 C 0.08 2.16 4.89 85.56 0.42 2.58 16 15 C -0.09 -2.07 5.35 -19.83 -0.11 -2.18 16 16 C -0.08 -1.23 9.66 22.27 0.22 -1.02 16 17 C -0.09 -0.95 10.04 22.27 0.22 -0.72 16 18 C -0.12 -1.82 10.02 22.30 0.22 -1.60 16 19 C 0.04 0.97 7.31 22.41 0.16 1.13 16 20 F -0.14 -3.85 17.18 44.97 0.77 -3.07 16 21 C 0.04 1.10 6.54 22.41 0.15 1.25 16 22 F -0.14 -4.63 12.73 44.97 0.57 -4.06 16 23 C 0.06 2.42 5.95 86.65 0.52 2.94 16 24 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.05 2.39 7.80 -2.39 -0.02 2.37 16 26 H 0.05 2.17 5.94 -2.39 -0.01 2.16 16 27 H 0.06 2.26 5.18 -2.39 -0.01 2.24 16 28 H 0.07 2.40 7.69 -2.38 -0.02 2.38 16 29 H 0.12 2.45 7.92 -2.39 -0.02 2.43 16 30 H 0.04 1.11 7.75 -2.39 -0.02 1.09 16 31 H 0.17 1.63 8.00 -2.91 -0.02 1.61 16 32 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.09 3.14 8.14 -2.39 -0.02 3.13 16 35 H 0.03 1.38 7.92 -2.39 -0.02 1.36 16 Total: -1.00 -69.65 286.71 2.73 -66.92 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.03 Total: 3.72 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 3.02 Total: -29.22 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -4.37 Total: -81.83 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 1.35 Total: -7.13 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.70 Total: 47.53 kcal Total: -69.65 2.73 -66.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397698100.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.600 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds