Wall clock time and date at job start Mon Mar 30 2020 07:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 N 1.29420 * 125.69611 * 89.69306 * 15 14 12 17 17 N 1.26393 * 116.47451 * 179.76801 * 16 15 14 18 18 C 1.29419 * 116.47448 * 0.53212 * 17 16 15 19 19 C 1.50699 * 125.69663 * 179.67670 * 18 17 16 20 20 C 1.53002 * 117.49607 * 8.66829 * 19 18 17 21 21 C 1.53003 * 117.49834 * 300.04562 * 19 18 17 22 22 S 1.71219 * 108.60915 * 359.71440 * 18 17 16 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 28 28 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 29 29 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 30 30 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 31 31 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 32 32 H 1.09001 * 115.55350 * 154.37447 * 19 18 17 33 33 H 1.08997 * 117.50286 * 359.97438 * 20 19 18 34 34 H 1.09005 * 117.49641 * 145.02681 * 20 19 18 35 35 H 1.09002 * 117.49792 * 214.97597 * 21 19 18 36 36 H 1.08998 * 117.50016 * 359.97354 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 7 1.0825 -1.8016 -4.1100 17 7 1.5160 -2.4223 -5.1221 18 6 2.6916 -2.0855 -5.5457 19 6 3.4084 -2.6915 -6.7247 20 6 2.6177 -3.6532 -7.6140 21 6 3.7014 -4.1925 -6.6781 22 16 3.2970 -0.8373 -4.5422 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 3.8029 -1.3532 -0.3068 28 1 3.8209 -1.3107 -2.0864 29 1 3.9187 0.2052 -1.1592 30 1 0.4722 0.1326 -2.3564 31 1 2.0519 0.9348 -2.5279 32 1 4.1453 -2.0496 -7.2076 33 1 1.5793 -3.8480 -7.3461 34 1 2.8344 -3.6441 -8.6823 35 1 4.6309 -4.5381 -7.1307 36 1 3.3762 -4.7416 -5.7945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528405596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:11 Heat of formation + Delta-G solvation = 99.397713 kcal Electronic energy + Delta-G solvation = -17866.704615 eV Core-core repulsion = 15093.523671 eV Total energy + Delta-G solvation = -2773.180944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15045 -37.63640 -37.05396 -33.14762 -31.36306 -29.27831 -28.24649 -26.05431 -24.62935 -23.75464 -22.62661 -22.42134 -19.79640 -19.21871 -18.70629 -16.47571 -16.35936 -15.68413 -15.30935 -14.79755 -14.26024 -13.98304 -13.86911 -13.29948 -12.68729 -12.56597 -12.35853 -11.97837 -11.76942 -11.46432 -11.22699 -11.04823 -10.92683 -10.80484 -10.74037 -10.28529 -10.23035 -10.17564 -10.01281 -9.83476 -9.45326 -9.27917 -8.94610 -8.46388 -7.37116 -6.05945 -4.10867 0.56036 1.00502 1.51933 2.69677 3.30305 3.34825 3.38006 3.60515 3.95936 4.36796 4.55313 4.55432 4.65669 4.77131 4.94889 5.24855 5.30620 5.39401 5.50282 5.57572 5.80725 5.82954 5.92866 5.94476 6.01022 6.22809 6.63013 6.78203 7.00330 7.04072 7.40401 7.58549 7.76815 8.07482 8.22252 8.46089 8.76781 8.93803 9.54126 11.00891 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037662 B = 0.004175 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.285372 B = 6704.820749 C = 6935.832914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.527 5.527 13 C 0.029 3.971 14 C 0.123 3.877 15 C 0.021 3.979 16 N -0.249 5.249 17 N -0.262 5.262 18 C -0.002 4.002 19 C -0.091 4.091 20 C -0.150 4.150 21 C -0.155 4.155 22 S 0.156 5.844 23 H 0.009 0.991 24 H 0.038 0.962 25 H 0.088 0.912 26 H 0.262 0.738 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.018 0.982 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 -3.091 -17.321 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.110 3.890 3 H 0.021 0.979 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.253 5.253 13 C -0.120 4.120 14 C -0.010 4.010 15 C -0.259 4.259 16 N -0.086 5.086 17 N -0.100 5.100 18 C -0.281 4.281 19 C -0.113 4.113 20 C -0.189 4.189 21 C -0.194 4.194 22 S 0.402 5.598 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.129 0.871 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.131 -3.588 -17.121 18.537 hybrid contribution 0.594 0.378 0.910 1.151 sum 6.725 -3.210 -16.211 17.842 Atomic orbital electron populations 1.21895 0.97371 1.00122 1.00015 1.19309 0.92598 0.92026 0.85032 0.97927 1.21067 1.31419 1.12432 0.89550 0.91835 1.24916 0.95099 0.95042 0.99013 1.69875 1.36666 1.22912 1.23680 0.86551 0.79047 0.79818 0.81952 1.21295 1.20156 1.20316 1.62163 1.09550 1.52560 1.01069 1.22382 0.88526 0.99588 1.01482 1.20722 1.03498 0.91264 0.85468 1.29422 0.93230 1.00378 1.02894 1.71428 1.27711 1.04899 1.04514 1.71387 1.09506 1.22009 1.07077 1.28135 0.96009 1.01012 1.02916 1.20320 1.02654 0.93208 0.95100 1.23040 0.98534 1.00709 0.96654 1.23079 1.00708 0.92973 1.02677 1.83600 1.20789 1.33800 1.21622 0.97175 0.94290 0.89360 0.92811 0.89796 0.94213 0.96338 0.87086 0.93212 0.85437 0.87320 0.87916 0.87707 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.76 37.16 0.33 -2.97 16 2 C 0.22 5.34 2.06 -68.87 -0.14 5.19 16 3 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 4 C -0.51 -13.64 7.93 -34.44 -0.27 -13.91 16 5 H 0.06 1.71 6.39 -52.49 -0.34 1.38 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.53 -11.36 4.61 -237.73 -1.10 -12.45 16 13 C 0.03 0.56 9.03 60.06 0.54 1.10 16 14 C 0.12 2.26 5.38 -4.97 -0.03 2.23 16 15 C 0.02 0.36 6.30 -13.29 -0.08 0.27 16 16 N -0.25 -4.74 11.66 32.58 0.38 -4.36 16 17 N -0.26 -4.50 11.21 32.58 0.37 -4.13 16 18 C 0.00 -0.03 7.08 -13.30 -0.09 -0.13 16 19 C -0.09 -0.90 6.31 -91.77 -0.58 -1.48 16 20 C -0.15 -1.32 10.13 -26.73 -0.27 -1.59 16 21 C -0.16 -1.36 10.23 -26.73 -0.27 -1.63 16 22 S 0.16 2.10 21.48 -107.50 -2.31 -0.20 16 23 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 27 H 0.08 1.74 6.23 -51.93 -0.32 1.41 16 28 H 0.04 0.68 5.83 -51.93 -0.30 0.38 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 2.10 5.83 -51.93 -0.30 1.79 16 31 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 1.15 7.88 -51.93 -0.41 0.74 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 307.52 15.07 4.63 4.63 Total: -1.00 -29.92 307.52 -8.22 -38.13 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.83 Total: -2.00 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.97 Total: -11.35 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.28 Total: -45.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.31 Total: -0.20 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.92 -8.22 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528405596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.532 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds