Wall clock time and date at job start Mon Mar 30 2020 07:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 N 1.29420 * 125.69611 * 89.69306 * 15 14 12 17 17 N 1.26393 * 116.47451 * 179.76801 * 16 15 14 18 18 C 1.29419 * 116.47448 * 0.53212 * 17 16 15 19 19 C 1.50699 * 125.69663 * 179.67670 * 18 17 16 20 20 C 1.53002 * 117.49607 * 8.66829 * 19 18 17 21 21 C 1.53003 * 117.49834 * 300.04562 * 19 18 17 22 22 S 1.71219 * 108.60915 * 359.71440 * 18 17 16 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 28 28 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 29 29 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 30 30 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 31 31 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 32 32 H 1.09001 * 115.55350 * 154.37447 * 19 18 17 33 33 H 1.08997 * 117.50286 * 359.97438 * 20 19 18 34 34 H 1.09005 * 117.49641 * 145.02681 * 20 19 18 35 35 H 1.09002 * 117.49792 * 214.97597 * 21 19 18 36 36 H 1.08998 * 117.50016 * 359.97354 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 7 1.0825 -1.8016 -4.1100 17 7 1.5160 -2.4223 -5.1221 18 6 2.6916 -2.0855 -5.5457 19 6 3.4084 -2.6915 -6.7247 20 6 2.6177 -3.6532 -7.6140 21 6 3.7014 -4.1925 -6.6781 22 16 3.2970 -0.8373 -4.5422 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 3.8029 -1.3532 -0.3068 28 1 3.8209 -1.3107 -2.0864 29 1 3.9187 0.2052 -1.1592 30 1 0.4722 0.1326 -2.3564 31 1 2.0519 0.9348 -2.5279 32 1 4.1453 -2.0496 -7.2076 33 1 1.5793 -3.8480 -7.3461 34 1 2.8344 -3.6441 -8.6823 35 1 4.6309 -4.5381 -7.1307 36 1 3.3762 -4.7416 -5.7945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528405596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:11 Heat of formation + Delta-G solvation = 79.845734 kcal Electronic energy + Delta-G solvation = -17867.552453 eV Core-core repulsion = 15093.523671 eV Total energy + Delta-G solvation = -2774.028781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.38160 -39.03588 -38.12871 -35.05092 -32.80553 -31.09838 -29.61123 -27.61534 -26.40804 -25.22226 -23.62574 -23.29088 -21.57055 -20.38059 -19.92079 -18.41059 -17.49431 -17.02024 -16.76956 -16.10268 -15.93924 -15.48834 -15.18547 -14.66712 -14.31890 -14.03244 -13.73150 -13.36534 -13.01440 -12.94482 -12.67039 -12.57890 -12.41854 -12.25382 -12.13680 -12.02989 -11.88163 -11.72161 -11.38005 -11.05017 -10.95740 -10.65659 -10.51560 -10.33166 -9.07865 -8.12627 -6.24217 -0.60568 -0.12776 0.33433 1.42668 1.44942 1.46597 1.52342 2.41852 2.82697 2.91346 3.15702 3.32027 3.48818 3.77413 3.87691 4.01527 4.05178 4.37488 4.39145 4.48551 4.55943 4.64848 4.77915 4.87420 4.93926 4.96825 5.01725 5.11239 5.19380 5.26756 5.44332 5.68272 5.72088 6.20814 6.27316 6.57901 6.87180 7.44441 7.55234 8.93276 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037662 B = 0.004175 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.285372 B = 6704.820749 C = 6935.832914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.221 3.779 3 H -0.020 1.020 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.283 1.283 10 H -0.276 1.276 11 H -0.269 1.269 12 N -0.542 5.542 13 C 0.034 3.966 14 C 0.127 3.873 15 C -0.013 4.013 16 N -0.282 5.282 17 N -0.297 5.297 18 C 0.004 3.996 19 C -0.106 4.106 20 C -0.146 4.146 21 C -0.147 4.147 22 S 0.227 5.773 23 H 0.033 0.967 24 H 0.025 0.975 25 H 0.065 0.935 26 H 0.263 0.737 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.161 0.839 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.816 -3.611 -19.072 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 H -0.003 1.003 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.194 1.194 12 N -0.268 5.268 13 C -0.115 4.115 14 C -0.005 4.005 15 C -0.293 4.293 16 N -0.120 5.120 17 N -0.134 5.134 18 C -0.274 4.274 19 C -0.128 4.128 20 C -0.185 4.185 21 C -0.186 4.186 22 S 0.473 5.527 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.179 0.821 33 H 0.103 0.897 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.220 -4.106 -18.885 21.001 hybrid contribution 0.003 0.509 1.306 1.402 sum 8.222 -3.597 -17.579 19.737 Atomic orbital electron populations 1.21721 0.97383 0.99168 1.00037 1.19068 0.92567 0.90751 0.86114 1.00279 1.21351 1.31492 1.12423 0.90808 0.92335 1.25660 0.95271 0.95708 1.01738 1.69993 1.37471 1.24009 1.24245 0.85597 0.78860 0.78511 0.78578 1.20866 1.20160 1.19399 1.62006 1.10840 1.52793 1.01190 1.22336 0.87365 1.00003 1.01778 1.20591 1.02974 0.92121 0.84771 1.29139 0.95697 1.00857 1.03599 1.71390 1.29405 1.05684 1.05497 1.71369 1.11360 1.23144 1.07548 1.28890 0.95142 1.00143 1.03221 1.20749 1.03524 0.94313 0.94228 1.23111 0.97325 0.99746 0.98281 1.23163 1.02004 0.91449 1.01966 1.83228 1.17369 1.32519 1.19537 0.94848 0.95549 0.91616 0.92798 0.91512 0.91956 0.95604 0.88314 0.91458 0.82126 0.89715 0.84772 0.84454 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.76 71.98 0.63 -5.58 16 2 C 0.22 11.17 2.06 44.17 0.09 11.26 16 3 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 4 C -0.52 -28.56 7.93 25.60 0.20 -28.36 16 5 H 0.06 3.19 6.39 -2.91 -0.02 3.17 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.16 11.32 21.45 0.24 -51.92 16 8 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 N -0.54 -23.48 4.61 -906.04 -4.18 -27.66 16 13 C 0.03 1.28 9.03 127.69 1.15 2.43 16 14 C 0.13 4.66 5.38 85.56 0.46 5.12 16 15 C -0.01 -0.44 6.30 88.47 0.56 0.11 16 16 N -0.28 -10.80 11.66 -50.84 -0.59 -11.39 16 17 N -0.30 -10.07 11.21 -50.85 -0.57 -10.64 16 18 C 0.00 0.11 7.08 88.46 0.63 0.73 16 19 C -0.11 -1.76 6.31 -11.54 -0.07 -1.83 16 20 C -0.15 -2.16 10.13 30.60 0.31 -1.85 16 21 C -0.15 -2.12 10.23 30.60 0.31 -1.81 16 22 S 0.23 5.58 21.48 -56.49 -1.21 4.37 16 23 H 0.03 1.45 6.20 -2.38 -0.01 1.43 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 26 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.07 2.76 6.23 -2.39 -0.01 2.74 16 28 H 0.06 2.04 5.83 -2.39 -0.01 2.03 16 29 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.10 3.79 5.83 -2.38 -0.01 3.77 16 31 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 32 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.71 7.88 -2.39 -0.02 1.69 16 34 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -65.93 307.52 1.52 -64.42 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.09 Total: 5.83 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 4.72 Total: -18.48 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -5.10 Total: -101.61 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 5.58 SS G_CDS: -1.21 Total: 4.37 kcal Total: -65.93 1.52 -64.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528405596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.261 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds