Wall clock time and date at job start Mon Mar 30 2020 07:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00093 * 2 1 4 4 H 1.08005 * 120.00217 * 202.34641 * 3 2 1 5 5 C 1.38812 * 120.00129 * 22.34746 * 3 2 1 6 6 N 1.31620 * 119.99772 * 11.34072 * 5 3 2 7 7 Si 1.86799 * 119.99916 * 191.34772 * 5 3 2 8 8 H 1.48497 * 109.47576 * 90.00030 * 7 5 3 9 9 H 1.48506 * 109.46905 * 209.99647 * 7 5 3 10 10 H 1.48497 * 109.47264 * 329.99400 * 7 5 3 11 11 C 1.46500 * 120.00007 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46981 * 269.99656 * 11 2 1 13 13 C 1.53000 * 109.47216 * 179.97438 * 12 11 2 14 14 C 1.52999 * 109.46874 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46781 * 180.02562 * 14 13 12 16 16 C 1.38261 * 119.99335 * 269.71705 * 15 14 13 17 17 C 1.38219 * 120.02383 * 179.76742 * 16 15 14 18 18 C 1.38237 * 120.01495 * 0.51282 * 17 16 15 19 19 C 1.38331 * 119.98444 * 359.74360 * 18 17 16 20 20 Cl 1.73603 * 120.00921 * 180.02562 * 19 18 17 21 21 C 1.38197 * 119.98977 * 90.00084 * 15 14 13 22 22 H 1.08991 * 109.46948 * 274.21619 * 1 2 3 23 23 H 1.09003 * 109.46627 * 34.20909 * 1 2 3 24 24 H 1.08994 * 109.46963 * 154.20477 * 1 2 3 25 25 H 0.96995 * 119.99718 * 180.02562 * 6 5 3 26 26 H 1.09003 * 109.47152 * 150.00254 * 11 2 1 27 27 H 1.09000 * 109.47314 * 29.99420 * 11 2 1 28 28 H 1.09002 * 109.47163 * 300.00496 * 12 11 2 29 29 H 1.09003 * 109.46689 * 60.00315 * 12 11 2 30 30 H 1.09000 * 109.46886 * 300.00205 * 13 12 11 31 31 H 1.08999 * 109.47121 * 60.00177 * 13 12 11 32 32 H 1.09000 * 109.47096 * 299.99543 * 14 13 12 33 33 H 1.08999 * 109.47538 * 59.99898 * 14 13 12 34 34 H 1.07994 * 119.98972 * 0.02562 * 16 15 14 35 35 H 1.08004 * 119.99443 * 180.26035 * 17 16 15 36 36 H 1.08007 * 120.00730 * 179.76734 * 18 17 16 37 37 H 1.07994 * 120.00947 * 359.95065 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3556 5 6 1.5339 2.3429 0.4571 6 7 0.3842 2.2691 1.0936 7 14 2.3368 4.0047 0.1687 8 1 1.8680 4.5632 -1.1249 9 1 1.9682 4.9303 1.2700 10 1 3.8123 3.8419 0.1319 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 6 3.2170 -3.0363 1.4413 14 6 3.4715 -3.4788 2.8836 15 6 4.2250 -4.7839 2.8830 16 6 3.5335 -5.9812 2.8880 17 6 4.2240 -7.1786 2.8826 18 6 5.6063 -7.1797 2.8830 19 6 6.2986 -5.9821 2.8835 20 17 8.0347 -5.9828 2.8833 21 6 5.6069 -4.7837 2.8835 22 1 -0.3633 0.0755 1.0248 23 1 -0.3633 0.8499 -0.5778 24 1 -0.3633 -0.9252 -0.4472 25 1 -0.0463 3.0776 1.4126 26 1 3.1499 -1.1382 -0.5143 27 1 1.6084 -2.0282 -0.5146 28 1 3.0416 -0.9515 1.9559 29 1 1.5001 -1.8416 1.9555 30 1 2.6275 -3.7955 0.9272 31 1 4.1694 -2.9062 0.9273 32 1 4.0608 -2.7197 3.3979 33 1 2.5189 -3.6090 3.3972 34 1 2.4536 -5.9809 2.8918 35 1 3.6834 -8.1136 2.8822 36 1 6.1457 -8.1155 2.8827 37 1 6.1469 -3.8484 2.8835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598590902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:06 Heat of formation + Delta-G solvation = 17.041831 kcal Electronic energy + Delta-G solvation = -17171.303475 eV Core-core repulsion = 14360.214855 eV Total energy + Delta-G solvation = -2811.088620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60559 -36.76695 -36.15387 -34.48724 -31.94603 -30.91209 -30.36306 -27.47342 -25.79471 -24.14896 -22.84492 -21.83036 -20.70534 -20.07512 -17.09221 -16.64981 -15.87914 -15.62896 -14.78434 -14.59224 -14.03198 -13.89228 -13.60048 -13.49114 -13.15233 -12.61080 -12.37500 -12.03348 -11.77905 -11.57177 -11.45556 -11.19489 -10.97953 -10.87768 -10.64514 -10.61061 -10.50037 -10.29392 -9.99463 -9.79250 -9.64890 -9.04276 -8.79544 -8.49322 -6.68724 -5.66924 -3.11954 0.98751 1.09770 1.94405 3.41085 3.45141 3.47256 3.48592 4.53286 4.57541 4.63250 4.87868 5.08464 5.12962 5.27292 5.36808 5.49470 5.53200 5.59163 5.73350 5.87844 5.91273 6.03528 6.13396 6.22999 6.27201 6.33743 6.47949 6.55611 6.59313 6.67191 6.81928 7.00072 7.18919 7.44572 7.78692 7.85969 8.46587 9.30474 9.94486 10.43564 11.38464 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027883 B = 0.003224 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.971048 B = 8681.765501 C = 9384.023588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.606 5.606 3 C -0.251 4.251 4 H 0.068 0.932 5 C -0.001 4.001 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.153 3.847 12 C -0.137 4.137 13 C -0.109 4.109 14 C -0.084 4.084 15 C -0.057 4.057 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.123 4.123 19 C -0.032 4.032 20 Cl -0.077 7.077 21 C -0.110 4.110 22 H 0.027 0.973 23 H 0.043 0.957 24 H -0.005 1.005 25 H 0.251 0.749 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -19.053 4.453 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.329 5.329 3 C -0.381 4.381 4 H 0.086 0.914 5 C -0.199 4.199 6 N -0.556 5.556 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.025 3.975 12 C -0.178 4.178 13 C -0.148 4.148 14 C -0.121 4.121 15 C -0.058 4.058 16 C -0.133 4.133 17 C -0.125 4.125 18 C -0.142 4.142 19 C -0.058 4.058 20 Cl -0.048 7.048 21 C -0.129 4.129 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.013 0.987 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.648 -18.897 4.500 21.263 hybrid contribution 0.562 0.927 0.035 1.085 sum 9.209 -17.969 4.535 20.695 Atomic orbital electron populations 1.20776 0.82681 0.95410 0.99151 1.43990 1.01911 1.00847 1.86108 1.19245 0.97890 0.85546 1.35375 0.91441 1.25020 0.97779 0.98460 0.98625 1.70069 1.17947 1.26891 1.40716 0.86256 0.78809 0.84205 0.77301 1.21569 1.21782 1.20532 1.20818 0.95463 0.87895 0.93277 1.22263 0.99404 0.94625 1.01470 1.21578 1.00633 0.98325 0.94220 1.20746 0.99748 0.92606 0.99028 1.20068 0.92827 0.96100 0.96780 1.21222 1.00499 0.91786 0.99799 1.21100 0.93331 0.98476 0.99544 1.20999 0.94459 0.96687 1.02046 1.20933 0.84268 0.95267 1.05352 1.98368 1.10473 1.98975 1.96985 1.21021 0.93926 0.96992 1.00937 0.95500 0.93817 0.98656 0.93869 0.94118 0.94784 0.91960 0.92841 0.92456 0.92290 0.90677 0.90661 0.85318 0.85234 0.85284 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 9.01 59.85 0.54 4.70 16 2 N -0.61 -15.64 2.93 -181.12 -0.53 -16.17 16 3 C -0.25 -7.04 9.67 -15.06 -0.15 -7.18 16 4 H 0.07 1.85 7.84 -52.48 -0.41 1.44 16 5 C 0.00 -0.03 5.13 -17.43 -0.09 -0.12 16 6 N -0.91 -26.93 10.58 55.49 0.59 -26.35 16 7 Si 0.90 22.15 29.57 -169.99 -5.03 17.13 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.15 3.17 5.71 -4.04 -0.02 3.15 16 12 C -0.14 -2.51 5.54 -26.73 -0.15 -2.66 16 13 C -0.11 -1.53 5.20 -26.73 -0.14 -1.67 16 14 C -0.08 -1.02 5.35 -27.88 -0.15 -1.17 16 15 C -0.06 -0.65 5.13 -104.63 -0.54 -1.19 16 16 C -0.11 -1.15 9.70 -39.58 -0.38 -1.54 16 17 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 18 C -0.12 -1.17 9.83 -39.55 -0.39 -1.56 16 19 C -0.03 -0.34 6.32 -39.50 -0.25 -0.59 16 20 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 21 C -0.11 -1.25 9.49 -39.55 -0.38 -1.63 16 22 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 23 H 0.04 1.18 7.19 -51.93 -0.37 0.81 16 24 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 27 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.92 8.08 -51.93 -0.42 0.51 16 33 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -30.07 324.94 -9.82 -39.89 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -5.76 Total: -4.30 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.49 Total: -12.80 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.06 Total: -42.51 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.13 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.07 -9.82 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598590902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.930 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds