Wall clock time and date at job start Mon Mar 30 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 120.00207 * 2 1 4 4 H 1.48505 * 109.47125 * 270.00348 * 3 2 1 5 5 H 1.48503 * 109.46902 * 29.99985 * 3 2 1 6 6 H 1.48496 * 109.46959 * 150.00124 * 3 2 1 7 7 C 1.37875 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00421 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47281 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00186 * 179.97438 * 10 9 7 12 12 C 1.50696 * 112.85313 * 309.67360 * 11 10 9 13 13 C 1.38420 * 120.02571 * 78.79676 * 12 11 10 14 14 F 1.35093 * 120.01717 * 359.95616 * 13 12 11 15 15 C 1.38473 * 119.97025 * 179.97438 * 13 12 11 16 16 C 1.38212 * 120.02990 * 359.97438 * 15 13 12 17 17 C 1.38204 * 120.04557 * 0.26306 * 16 15 13 18 18 C 1.38423 * 120.02378 * 258.78063 * 12 11 10 19 19 F 1.35100 * 120.00804 * 0.03803 * 18 12 11 20 20 C 1.53786 * 113.68942 * 80.93615 * 11 10 9 21 21 C 1.53786 * 87.08165 * 89.12753 * 20 11 10 22 22 C 1.53777 * 87.07672 * 25.43326 * 21 20 11 23 23 H 0.97004 * 119.99468 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46568 * 60.00373 * 9 7 2 25 25 H 1.08998 * 109.47224 * 300.00772 * 9 7 2 26 26 H 1.00903 * 111.00223 * 303.95722 * 10 9 7 27 27 H 1.08007 * 119.98670 * 180.02562 * 15 13 12 28 28 H 1.08002 * 119.97395 * 179.97438 * 16 15 13 29 29 H 1.08008 * 119.98557 * 179.72231 * 17 16 15 30 30 H 1.09001 * 113.61907 * 203.68088 * 20 11 10 31 31 H 1.09001 * 113.61427 * 334.58192 * 20 11 10 32 32 H 1.08995 * 113.61501 * 270.88768 * 21 20 11 33 33 H 1.09001 * 113.68525 * 139.99478 * 21 20 11 34 34 H 1.09000 * 113.61449 * 220.01758 * 22 21 20 35 35 H 1.09001 * 113.69279 * 89.13169 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 6 0.4473 -4.9986 1.0693 13 6 -0.7831 -4.3934 0.8799 14 9 -1.0359 -3.7195 -0.2633 15 6 -1.7546 -4.4787 1.8630 16 6 -1.4964 -5.1682 3.0326 17 6 -0.2665 -5.7686 3.2248 18 6 0.7051 -5.6883 2.2415 19 9 1.9057 -6.2790 2.4278 20 6 1.0152 -5.3449 -1.3903 21 6 2.3821 -6.0260 -1.5710 22 6 2.4497 -6.1201 -0.0376 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8405 -3.5487 -0.7819 27 1 -2.7149 -4.0069 1.7153 28 1 -2.2546 -5.2338 3.7989 29 1 -0.0642 -6.3034 4.1412 30 1 0.1796 -6.0441 -1.3587 31 1 0.8474 -4.5141 -2.0757 32 1 3.1414 -5.3738 -2.0023 33 1 2.3261 -6.9956 -2.0659 34 1 3.4399 -5.9151 0.3692 35 1 2.0069 -7.0309 0.3653 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599691430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:13 Heat of formation + Delta-G solvation = -36.026378 kcal Electronic energy + Delta-G solvation = -21126.680485 eV Core-core repulsion = 17761.493974 eV Total energy + Delta-G solvation = -3365.186511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.69402 -48.44432 -39.60328 -37.79938 -33.68347 -31.74131 -30.67416 -29.97430 -26.50347 -25.45093 -24.42849 -22.41875 -22.08826 -21.17643 -18.73254 -17.67210 -16.78991 -16.42197 -16.16344 -15.44547 -15.16165 -14.98681 -14.76199 -14.70442 -14.41952 -13.96630 -13.33609 -12.83488 -12.69751 -12.44636 -11.99582 -11.92744 -11.67310 -11.58297 -11.48437 -11.15483 -10.87941 -10.66622 -10.42043 -10.09870 -10.04330 -9.74355 -9.10420 -8.59045 -8.47358 -8.39068 -7.25819 -5.99036 -4.01125 1.28288 1.30423 3.32930 3.38861 3.43692 3.63528 4.28580 4.44506 4.71072 4.75815 4.78768 4.95572 5.02707 5.10215 5.12591 5.36082 5.38366 5.43547 5.74515 5.94456 5.98779 6.04808 6.19939 6.24494 6.25657 6.29488 6.39006 6.44437 6.50743 6.63871 7.08046 7.29126 7.49425 7.79599 8.14748 8.37447 8.60209 9.07146 9.62676 11.11163 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.007458 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.180304 B = 3753.619456 C = 4328.227200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.190 3.810 10 N -0.659 5.659 11 C 0.138 3.862 12 C -0.125 4.125 13 C 0.156 3.844 14 F -0.113 7.113 15 C -0.171 4.171 16 C -0.069 4.069 17 C -0.177 4.177 18 C 0.139 3.861 19 F -0.128 7.128 20 C -0.166 4.166 21 C -0.142 4.142 22 C -0.125 4.125 23 H 0.260 0.740 24 H 0.002 0.998 25 H 0.028 0.972 26 H 0.336 0.664 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.314 -13.569 2.744 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.064 3.936 10 N -0.289 5.289 11 C 0.046 3.954 12 C -0.127 4.127 13 C 0.136 3.864 14 F -0.091 7.091 15 C -0.190 4.190 16 C -0.088 4.088 17 C -0.196 4.196 18 C 0.119 3.881 19 F -0.107 7.107 20 C -0.206 4.206 21 C -0.179 4.179 22 C -0.163 4.163 23 H 0.070 0.930 24 H 0.020 0.980 25 H 0.046 0.954 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.329 -13.397 3.390 14.014 hybrid contribution 0.174 1.109 -1.015 1.513 sum -2.155 -12.288 2.376 12.700 Atomic orbital electron populations 1.69987 1.05935 1.26567 1.50629 1.24958 0.94866 0.99163 0.95393 0.86529 0.79849 0.83214 0.78001 1.20747 1.21259 1.19828 1.21188 0.93441 0.90349 1.50579 0.92141 1.19801 0.90744 0.86692 0.96401 1.60687 1.20123 0.99532 1.48591 1.20739 0.91282 0.92891 0.90504 1.19660 0.95239 1.01104 0.96739 1.17233 0.93042 0.92222 0.83914 1.91618 1.94103 1.76629 1.46701 1.21189 1.00286 1.03303 0.94220 1.20716 0.96161 0.95447 0.96438 1.21059 0.93906 1.05059 0.99580 1.17098 0.81441 0.95777 0.93748 1.91487 1.42817 1.81247 1.95115 1.23690 0.97168 1.00796 0.98925 1.22808 0.97712 1.00488 0.96903 1.23151 1.00503 0.97071 0.95577 0.93030 0.98036 0.95405 0.84553 0.84330 0.84481 0.84575 0.90664 0.90841 0.90110 0.91716 0.90463 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.95 9.32 -34.44 -0.32 -15.28 16 8 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.19 5.04 3.82 -4.98 -0.02 5.02 16 10 N -0.66 -14.71 6.42 -101.57 -0.65 -15.36 16 11 C 0.14 2.60 0.86 -131.94 -0.11 2.48 16 12 C -0.13 -2.34 4.42 -104.49 -0.46 -2.80 16 13 C 0.16 2.97 5.48 -39.43 -0.22 2.75 16 14 F -0.11 -2.44 13.07 2.25 0.03 -2.41 16 15 C -0.17 -2.67 10.02 -39.50 -0.40 -3.06 16 16 C -0.07 -0.90 10.04 -39.60 -0.40 -1.29 16 17 C -0.18 -2.42 10.02 -39.51 -0.40 -2.82 16 18 C 0.14 2.32 6.94 -39.43 -0.27 2.05 16 19 F -0.13 -2.11 14.30 2.25 0.03 -2.08 16 20 C -0.17 -2.81 6.01 -25.91 -0.16 -2.96 16 21 C -0.14 -2.04 7.74 -25.92 -0.20 -2.24 16 22 C -0.13 -1.96 5.57 -25.92 -0.14 -2.11 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.00 0.05 6.29 -51.93 -0.33 -0.27 16 25 H 0.03 0.80 5.86 -51.93 -0.30 0.50 16 26 H 0.34 7.12 7.88 -39.29 -0.31 6.82 16 27 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 28 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 31 H 0.07 1.37 7.78 -51.93 -0.40 0.97 16 32 H 0.08 1.15 7.71 -51.93 -0.40 0.75 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.18 7.01 -51.93 -0.36 0.82 16 LS Contribution 290.84 15.07 4.38 4.38 Total: -1.00 -31.32 290.84 -7.87 -39.19 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.19 Total: 4.04 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.19 Total: -18.69 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.08 Total: -41.47 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.06 Total: -4.48 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.32 -7.87 -39.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599691430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.162 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds