Wall clock time and date at job start Mon Mar 30 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 120.00207 * 2 1 4 4 H 1.48505 * 109.47125 * 270.00348 * 3 2 1 5 5 H 1.48503 * 109.46902 * 29.99985 * 3 2 1 6 6 H 1.48496 * 109.46959 * 150.00124 * 3 2 1 7 7 C 1.37875 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00421 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47281 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00186 * 179.97438 * 10 9 7 12 12 C 1.50696 * 112.85313 * 309.67360 * 11 10 9 13 13 C 1.38420 * 120.02571 * 78.79676 * 12 11 10 14 14 F 1.35093 * 120.01717 * 359.95616 * 13 12 11 15 15 C 1.38473 * 119.97025 * 179.97438 * 13 12 11 16 16 C 1.38212 * 120.02990 * 359.97438 * 15 13 12 17 17 C 1.38204 * 120.04557 * 0.26306 * 16 15 13 18 18 C 1.38423 * 120.02378 * 258.78063 * 12 11 10 19 19 F 1.35100 * 120.00804 * 0.03803 * 18 12 11 20 20 C 1.53786 * 113.68942 * 80.93615 * 11 10 9 21 21 C 1.53786 * 87.08165 * 89.12753 * 20 11 10 22 22 C 1.53777 * 87.07672 * 25.43326 * 21 20 11 23 23 H 0.97004 * 119.99468 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46568 * 60.00373 * 9 7 2 25 25 H 1.08998 * 109.47224 * 300.00772 * 9 7 2 26 26 H 1.00903 * 111.00223 * 303.95722 * 10 9 7 27 27 H 1.08007 * 119.98670 * 180.02562 * 15 13 12 28 28 H 1.08002 * 119.97395 * 179.97438 * 16 15 13 29 29 H 1.08008 * 119.98557 * 179.72231 * 17 16 15 30 30 H 1.09001 * 113.61907 * 203.68088 * 20 11 10 31 31 H 1.09001 * 113.61427 * 334.58192 * 20 11 10 32 32 H 1.08995 * 113.61501 * 270.88768 * 21 20 11 33 33 H 1.09001 * 113.68525 * 139.99478 * 21 20 11 34 34 H 1.09000 * 113.61449 * 220.01758 * 22 21 20 35 35 H 1.09001 * 113.69279 * 89.13169 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 6 0.4473 -4.9986 1.0693 13 6 -0.7831 -4.3934 0.8799 14 9 -1.0359 -3.7195 -0.2633 15 6 -1.7546 -4.4787 1.8630 16 6 -1.4964 -5.1682 3.0326 17 6 -0.2665 -5.7686 3.2248 18 6 0.7051 -5.6883 2.2415 19 9 1.9057 -6.2790 2.4278 20 6 1.0152 -5.3449 -1.3903 21 6 2.3821 -6.0260 -1.5710 22 6 2.4497 -6.1201 -0.0376 23 1 -0.4849 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8405 -3.5487 -0.7819 27 1 -2.7149 -4.0069 1.7153 28 1 -2.2546 -5.2338 3.7989 29 1 -0.0642 -6.3034 4.1412 30 1 0.1796 -6.0441 -1.3587 31 1 0.8474 -4.5141 -2.0757 32 1 3.1414 -5.3738 -2.0023 33 1 2.3261 -6.9956 -2.0659 34 1 3.4399 -5.9151 0.3692 35 1 2.0069 -7.0309 0.3653 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599691430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:13 Heat of formation + Delta-G solvation = -55.726361 kcal Electronic energy + Delta-G solvation = -21127.534740 eV Core-core repulsion = 17761.493974 eV Total energy + Delta-G solvation = -3366.040766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.95214 -49.93790 -40.97645 -39.03676 -35.68647 -33.64383 -32.01980 -31.18667 -28.50604 -26.80813 -25.83757 -24.05850 -23.55216 -22.60831 -20.15861 -19.02334 -18.59274 -17.96696 -17.51571 -16.92924 -16.54784 -16.47101 -16.29497 -16.18564 -16.10483 -15.24843 -14.79161 -14.61421 -14.38648 -13.82417 -13.59872 -13.28117 -13.19490 -12.97028 -12.87023 -12.74719 -12.68023 -12.43158 -12.11994 -11.70131 -11.44245 -11.30675 -11.11146 -10.65557 -9.89341 -9.66294 -9.05438 -8.20720 -6.32424 0.05181 0.07039 1.37588 1.39373 1.50983 2.37327 2.42781 3.04599 3.10889 3.36212 3.48728 3.53041 3.58585 3.69701 3.85267 3.93239 4.17018 4.27979 4.40274 4.69966 4.72226 4.90260 4.93165 4.98770 5.03352 5.06594 5.10005 5.16151 5.22746 5.26354 5.34734 5.38317 5.61176 5.86804 6.03636 6.43038 6.67997 6.88407 7.37106 8.89478 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.007458 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.180304 B = 3753.619456 C = 4328.227200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.217 3.783 10 N -0.664 5.664 11 C 0.119 3.881 12 C -0.152 4.152 13 C 0.114 3.886 14 F -0.142 7.142 15 C -0.176 4.176 16 C -0.053 4.053 17 C -0.162 4.162 18 C 0.123 3.877 19 F -0.130 7.130 20 C -0.164 4.164 21 C -0.127 4.127 22 C -0.111 4.111 23 H 0.264 0.736 24 H -0.028 1.028 25 H 0.002 0.998 26 H 0.338 0.662 27 H 0.152 0.848 28 H 0.186 0.814 29 H 0.175 0.825 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 -14.534 4.271 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.077 0.923 9 C 0.090 3.910 10 N -0.294 5.294 11 C 0.027 3.973 12 C -0.154 4.154 13 C 0.094 3.906 14 F -0.120 7.120 15 C -0.195 4.195 16 C -0.070 4.070 17 C -0.181 4.181 18 C 0.103 3.897 19 F -0.108 7.108 20 C -0.203 4.203 21 C -0.164 4.164 22 C -0.149 4.149 23 H 0.072 0.928 24 H -0.010 1.010 25 H 0.020 0.980 26 H 0.157 0.843 27 H 0.169 0.831 28 H 0.203 0.797 29 H 0.193 0.807 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.989 -14.390 4.913 15.335 hybrid contribution 0.001 1.341 -1.421 1.954 sum -1.988 -13.049 3.492 13.654 Atomic orbital electron populations 1.70127 1.07565 1.27688 1.51050 1.25892 0.95797 1.03046 0.94615 0.85396 0.78527 0.78283 0.78461 1.19706 1.20513 1.19112 1.21592 0.93629 0.91894 1.51112 0.92282 1.19270 0.90395 0.87675 0.93703 1.60564 1.19743 1.00298 1.48778 1.20989 0.92532 0.91966 0.91835 1.19803 0.95177 1.02580 0.97861 1.17746 0.94697 0.93869 0.84304 1.91534 1.94365 1.77672 1.48426 1.21544 1.00138 1.03441 0.94364 1.21271 0.96863 0.92961 0.95949 1.21555 0.93001 1.03760 0.99757 1.17369 0.82195 0.96166 0.93936 1.91476 1.43029 1.81230 1.95069 1.23619 0.99105 1.00266 0.97344 1.22782 0.95654 1.01587 0.96370 1.23078 0.99462 0.95921 0.96444 0.92772 1.01003 0.98019 0.84344 0.83069 0.79665 0.80741 0.89766 0.93699 0.90055 0.88738 0.90751 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.15 13.29 21.45 0.28 -56.86 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.54 -32.43 9.32 25.60 0.24 -32.19 16 8 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 9 C 0.22 12.12 3.82 85.56 0.33 12.44 16 10 N -0.66 -30.76 6.42 -475.26 -3.05 -33.81 16 11 C 0.12 4.56 0.86 3.31 0.00 4.56 16 12 C -0.15 -5.78 4.42 -19.78 -0.09 -5.86 16 13 C 0.11 4.48 5.48 22.37 0.12 4.60 16 14 F -0.14 -6.60 13.07 44.97 0.59 -6.01 16 15 C -0.18 -5.38 10.02 22.32 0.22 -5.16 16 16 C -0.05 -1.19 10.04 22.26 0.22 -0.97 16 17 C -0.16 -3.92 10.02 22.32 0.22 -3.70 16 18 C 0.12 3.95 6.94 22.37 0.16 4.11 16 19 F -0.13 -4.07 14.30 44.97 0.64 -3.42 16 20 C -0.16 -5.71 6.01 31.12 0.19 -5.52 16 21 C -0.13 -3.53 7.74 31.12 0.24 -3.29 16 22 C -0.11 -3.40 5.57 31.12 0.17 -3.22 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.03 -1.68 6.29 -2.39 -0.01 -1.70 16 25 H 0.00 0.11 5.86 -2.39 -0.01 0.09 16 26 H 0.34 14.92 7.88 -89.69 -0.71 14.21 16 27 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 28 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.08 2.73 8.09 -2.39 -0.02 2.71 16 31 H 0.04 1.79 7.78 -2.39 -0.02 1.77 16 32 H 0.08 2.26 7.71 -2.39 -0.02 2.24 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.10 2.64 7.01 -2.39 -0.02 2.62 16 Total: -1.00 -70.90 290.84 3.39 -67.50 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.41 Total: 18.35 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 2.49 Total: -33.42 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -2.76 Total: -90.68 kcal Atomic # 9 Polarization: -10.67 SS G_CDS: 1.23 Total: -9.43 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.90 3.39 -67.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599691430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.775 kcal (2) G-P(sol) polarization free energy of solvation -70.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds