Wall clock time and date at job start Mon Mar 30 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 115.55340 * 2 1 4 4 N 1.46499 * 109.47285 * 65.27837 * 3 2 1 5 5 C 1.39684 * 119.99973 * 184.48836 * 4 3 2 6 6 C 1.39337 * 119.95417 * 359.97438 * 5 4 3 7 7 C 1.38471 * 120.42271 * 179.97438 * 6 5 4 8 8 C 1.37685 * 120.33020 * 0.02590 * 7 6 5 9 9 C 1.40746 * 119.88975 * 359.97333 * 8 7 6 10 10 C 1.41417 * 120.20558 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99604 * 151.07922 * 10 9 8 12 12 C 1.39929 * 119.99764 * 331.07298 * 10 9 8 13 13 N 1.30832 * 119.99741 * 157.53684 * 12 10 9 14 14 Si 1.86793 * 120.00020 * 337.53462 * 12 10 9 15 15 H 1.48502 * 109.47166 * 92.46506 * 14 12 10 16 16 H 1.48505 * 109.47139 * 212.45911 * 14 12 10 17 17 H 1.48496 * 109.47540 * 332.45821 * 14 12 10 18 18 C 1.38276 * 119.95062 * 179.72627 * 5 4 3 19 19 C 1.53006 * 117.50067 * 214.32506 * 2 1 3 20 20 C 1.53006 * 117.49671 * 145.66932 * 2 1 3 21 21 F 1.39902 * 117.49492 * 215.00557 * 20 2 1 22 22 F 1.39901 * 117.49902 * 359.97438 * 20 2 1 23 23 H 1.09000 * 109.47147 * 59.08131 * 1 2 3 24 24 H 1.09001 * 109.47323 * 179.08119 * 1 2 3 25 25 H 1.08999 * 109.47407 * 299.07951 * 1 2 3 26 26 H 1.09003 * 109.47420 * 185.28409 * 3 2 1 27 27 H 1.09003 * 109.46621 * 305.27896 * 3 2 1 28 28 H 0.97003 * 119.99775 * 4.48659 * 4 3 2 29 29 H 1.08002 * 119.78544 * 359.97438 * 6 5 4 30 30 H 1.08008 * 119.83360 * 179.97438 * 7 6 5 31 31 H 1.07998 * 120.05399 * 180.02562 * 8 7 6 32 32 H 0.96992 * 119.99863 * 179.97438 * 13 12 10 33 33 H 1.08006 * 120.16242 * 0.02562 * 18 5 4 34 34 H 1.09005 * 117.49367 * 359.97438 * 19 2 1 35 35 H 1.08995 * 117.50058 * 144.99705 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.8794 2.0701 1.2546 5 6 2.2960 3.3893 1.4479 6 6 3.0072 4.0480 0.4471 7 6 3.4244 5.3559 0.6283 8 6 3.1411 6.0200 1.8006 9 6 2.4235 5.3675 2.8206 10 6 2.1285 6.0435 4.0272 11 1 1.2440 5.7831 4.5896 12 6 2.9826 7.0494 4.4925 13 7 2.5335 7.9580 5.3198 14 14 4.7640 7.0950 3.9325 15 1 4.8842 7.9640 2.7343 16 1 5.6124 7.6372 5.0241 17 1 5.2119 5.7203 3.5940 18 6 1.9975 4.0412 2.6303 19 6 2.2365 -1.1208 -0.7653 20 6 2.2364 -1.1208 0.7654 21 9 3.4363 -0.8048 1.4118 22 9 1.4338 -2.0668 1.4122 23 1 -0.3633 0.5280 -0.8816 24 1 -0.3634 -1.0275 -0.0165 25 1 -0.3634 0.4995 0.8981 26 1 3.2699 1.2668 -0.0946 27 1 1.8111 1.9641 -0.8390 28 1 1.3846 1.6107 1.9510 29 1 3.2345 3.5352 -0.4758 30 1 3.9754 5.8573 -0.1537 31 1 3.4683 7.0402 1.9370 32 1 3.1256 8.6551 5.6426 33 1 1.4431 3.5328 3.4053 34 1 1.6112 -1.8584 -1.2684 35 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689139662.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:40 Heat of formation + Delta-G solvation = -53.921066 kcal Electronic energy + Delta-G solvation = -19746.805284 eV Core-core repulsion = 16380.842801 eV Total energy + Delta-G solvation = -3365.962483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.76019 -47.42591 -38.58704 -37.45766 -34.56504 -33.05445 -30.16407 -29.32729 -28.34166 -25.49107 -24.94580 -22.80362 -21.08780 -20.55595 -19.62572 -17.80402 -17.47861 -16.71360 -16.06912 -15.84987 -15.23424 -14.71923 -14.53000 -14.11417 -13.98416 -13.82915 -13.59700 -13.41164 -13.10345 -12.99681 -12.57822 -12.50519 -12.42600 -11.93390 -11.51203 -11.44228 -10.98339 -10.74190 -10.69564 -10.40076 -9.93912 -9.74342 -9.47108 -9.23336 -8.87238 -7.57496 -6.89559 -6.46604 -4.41245 2.72257 2.79110 2.84489 2.94670 3.20322 3.29607 3.41924 3.75531 4.02998 4.07754 4.34150 4.47692 4.56697 4.61200 5.13175 5.18132 5.43383 5.51326 5.54478 5.54786 5.74006 5.76063 5.94027 6.06975 6.34062 6.63871 6.82686 6.86988 7.00575 7.33747 7.58562 7.71670 7.83308 8.02865 8.36957 8.42603 8.52723 8.81324 8.93970 10.13355 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.004328 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.211903 B = 6468.271554 C = 6566.365003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.133 4.133 3 C 0.170 3.830 4 N -0.756 5.756 5 C 0.237 3.763 6 C -0.304 4.304 7 C -0.047 4.047 8 C -0.274 4.274 9 C 0.126 3.874 10 C -0.453 4.453 11 H 0.088 0.912 12 C 0.089 3.911 13 N -0.808 5.808 14 Si 0.914 3.086 15 H -0.269 1.269 16 H -0.293 1.293 17 H -0.248 1.248 18 C -0.278 4.278 19 C -0.164 4.164 20 C 0.198 3.802 21 F -0.154 7.154 22 F -0.162 7.162 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.391 0.609 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.284 0.716 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 -14.790 -11.150 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.135 4.135 3 C 0.045 3.955 4 N -0.390 5.390 5 C 0.138 3.862 6 C -0.326 4.326 7 C -0.066 4.066 8 C -0.294 4.294 9 C 0.122 3.878 10 C -0.481 4.481 11 H 0.106 0.894 12 C -0.131 4.131 13 N -0.432 5.432 14 Si 0.740 3.260 15 H -0.195 1.195 16 H -0.221 1.221 17 H -0.171 1.171 18 C -0.302 4.302 19 C -0.202 4.202 20 C 0.161 3.839 21 F -0.134 7.134 22 F -0.142 7.142 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.224 0.776 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.657 -14.618 -11.094 18.363 hybrid contribution 0.682 -0.175 0.351 0.787 sum 0.026 -14.793 -10.744 18.282 Atomic orbital electron populations 1.21328 0.89648 1.02730 1.03770 1.23203 0.97575 0.92491 1.00186 1.20573 0.98163 0.87610 0.89165 1.44315 1.64948 1.12323 1.17394 1.17500 0.92506 0.82463 0.93765 1.19872 1.15799 0.97132 0.99825 1.20362 0.96562 0.93701 0.95988 1.20965 1.12707 0.99857 0.95854 1.17427 0.88143 0.89989 0.92237 1.19436 1.09316 1.13714 1.05682 0.89413 1.26135 1.01608 0.92264 0.93043 1.69745 1.37764 1.09527 1.26182 0.86318 0.81256 0.80974 0.77439 1.19482 1.22070 1.17106 1.20380 1.16331 0.95947 0.97496 1.24455 1.04292 1.00295 0.91162 1.20133 0.81324 0.93863 0.88570 1.93064 1.44386 1.92582 1.83400 1.93005 1.72304 1.65335 1.83584 0.90547 0.91697 0.90839 0.92415 0.91080 0.77567 0.89142 0.89070 0.88374 0.90592 0.88592 0.85829 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.39 37.15 0.35 -0.73 16 2 C -0.13 -1.39 2.13 -154.51 -0.33 -1.72 16 3 C 0.17 2.25 4.50 -4.04 -0.02 2.23 16 4 N -0.76 -12.67 5.65 -58.69 -0.33 -13.00 16 5 C 0.24 5.01 6.64 -83.86 -0.56 4.46 16 6 C -0.30 -6.38 9.30 -39.09 -0.36 -6.75 16 7 C -0.05 -1.05 10.01 -39.70 -0.40 -1.45 16 8 C -0.27 -6.82 7.39 -38.84 -0.29 -7.11 16 9 C 0.13 3.30 5.09 -106.85 -0.54 2.75 16 10 C -0.45 -12.62 9.54 -37.74 -0.36 -12.98 16 11 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 12 C 0.09 2.38 5.34 -17.34 -0.09 2.29 16 13 N -0.81 -21.98 13.93 55.55 0.77 -21.21 16 14 Si 0.91 21.53 24.75 -169.99 -4.21 17.32 16 15 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16 18 C -0.28 -6.65 9.63 -38.68 -0.37 -7.02 16 19 C -0.16 -1.33 9.90 -26.69 -0.26 -1.59 16 20 C 0.20 2.31 5.14 -26.69 -0.14 2.17 16 21 F -0.15 -2.21 16.99 2.25 0.04 -2.17 16 22 F -0.16 -2.00 16.90 2.25 0.04 -1.96 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.52 7.76 -51.93 -0.40 0.12 16 25 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 26 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 27 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 28 H 0.39 6.22 8.18 -40.82 -0.33 5.89 16 29 H 0.09 1.66 6.69 -52.49 -0.35 1.31 16 30 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.10 2.46 4.84 -52.49 -0.25 2.20 16 32 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 33 H 0.10 2.22 8.06 -52.48 -0.42 1.79 16 34 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -29.15 300.74 -6.79 -35.94 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.26 Total: 6.00 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -3.37 Total: -25.45 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.44 Total: -34.21 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.08 Total: -4.13 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.21 Total: 17.32 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.15 -6.79 -35.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689139662.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.983 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds