Wall clock time and date at job start Mon Mar 30 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 115.55340 * 2 1 4 4 N 1.46499 * 109.47285 * 65.27837 * 3 2 1 5 5 C 1.39684 * 119.99973 * 184.48836 * 4 3 2 6 6 C 1.39337 * 119.95417 * 359.97438 * 5 4 3 7 7 C 1.38471 * 120.42271 * 179.97438 * 6 5 4 8 8 C 1.37685 * 120.33020 * 0.02590 * 7 6 5 9 9 C 1.40746 * 119.88975 * 359.97333 * 8 7 6 10 10 C 1.41417 * 120.20558 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99604 * 151.07922 * 10 9 8 12 12 C 1.39929 * 119.99764 * 331.07298 * 10 9 8 13 13 N 1.30832 * 119.99741 * 157.53684 * 12 10 9 14 14 Si 1.86793 * 120.00020 * 337.53462 * 12 10 9 15 15 H 1.48502 * 109.47166 * 92.46506 * 14 12 10 16 16 H 1.48505 * 109.47139 * 212.45911 * 14 12 10 17 17 H 1.48496 * 109.47540 * 332.45821 * 14 12 10 18 18 C 1.38276 * 119.95062 * 179.72627 * 5 4 3 19 19 C 1.53006 * 117.50067 * 214.32506 * 2 1 3 20 20 C 1.53006 * 117.49671 * 145.66932 * 2 1 3 21 21 F 1.39902 * 117.49492 * 215.00557 * 20 2 1 22 22 F 1.39901 * 117.49902 * 359.97438 * 20 2 1 23 23 H 1.09000 * 109.47147 * 59.08131 * 1 2 3 24 24 H 1.09001 * 109.47323 * 179.08119 * 1 2 3 25 25 H 1.08999 * 109.47407 * 299.07951 * 1 2 3 26 26 H 1.09003 * 109.47420 * 185.28409 * 3 2 1 27 27 H 1.09003 * 109.46621 * 305.27896 * 3 2 1 28 28 H 0.97003 * 119.99775 * 4.48659 * 4 3 2 29 29 H 1.08002 * 119.78544 * 359.97438 * 6 5 4 30 30 H 1.08008 * 119.83360 * 179.97438 * 7 6 5 31 31 H 1.07998 * 120.05399 * 180.02562 * 8 7 6 32 32 H 0.96992 * 119.99863 * 179.97438 * 13 12 10 33 33 H 1.08006 * 120.16242 * 0.02562 * 18 5 4 34 34 H 1.09005 * 117.49367 * 359.97438 * 19 2 1 35 35 H 1.08995 * 117.50058 * 144.99705 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.8794 2.0701 1.2546 5 6 2.2960 3.3893 1.4479 6 6 3.0072 4.0480 0.4471 7 6 3.4244 5.3559 0.6283 8 6 3.1411 6.0200 1.8006 9 6 2.4235 5.3675 2.8206 10 6 2.1285 6.0435 4.0272 11 1 1.2440 5.7831 4.5896 12 6 2.9826 7.0494 4.4925 13 7 2.5335 7.9580 5.3198 14 14 4.7640 7.0950 3.9325 15 1 4.8842 7.9640 2.7343 16 1 5.6124 7.6372 5.0241 17 1 5.2119 5.7203 3.5940 18 6 1.9975 4.0412 2.6303 19 6 2.2365 -1.1208 -0.7653 20 6 2.2364 -1.1208 0.7654 21 9 3.4363 -0.8048 1.4118 22 9 1.4338 -2.0668 1.4122 23 1 -0.3633 0.5280 -0.8816 24 1 -0.3634 -1.0275 -0.0165 25 1 -0.3634 0.4995 0.8981 26 1 3.2699 1.2668 -0.0946 27 1 1.8111 1.9641 -0.8390 28 1 1.3846 1.6107 1.9510 29 1 3.2345 3.5352 -0.4758 30 1 3.9754 5.8573 -0.1537 31 1 3.4683 7.0402 1.9370 32 1 3.1256 8.6551 5.6426 33 1 1.4431 3.5328 3.4053 34 1 1.6112 -1.8584 -1.2684 35 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689139662.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:40 Heat of formation + Delta-G solvation = -71.021737 kcal Electronic energy + Delta-G solvation = -19747.546825 eV Core-core repulsion = 16380.842801 eV Total energy + Delta-G solvation = -3366.704023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.67173 -48.36549 -40.00712 -38.71672 -36.16815 -34.84801 -32.03880 -30.65293 -29.32331 -27.05876 -26.60512 -23.59413 -22.81337 -22.22592 -20.68727 -19.31636 -18.72042 -17.79280 -17.61968 -16.99345 -16.62947 -16.37308 -16.21888 -15.16647 -15.05505 -14.96639 -14.80658 -14.57999 -14.37947 -14.14531 -14.11662 -13.85993 -13.70429 -13.23803 -13.11755 -12.76371 -12.66620 -12.35841 -12.20578 -11.70974 -11.55031 -11.35820 -11.07359 -10.74256 -10.53354 -9.46885 -8.89569 -8.09348 -6.47902 0.87138 1.11021 1.29835 1.44482 1.53301 1.94491 2.07090 2.17214 2.65833 2.69520 3.24825 3.31721 3.62749 3.63555 3.73399 4.32462 4.39090 4.58412 4.59820 4.67261 4.73710 4.77812 4.79900 4.84443 4.88993 5.01427 5.10470 5.18914 5.21649 5.54577 5.77181 5.88525 6.01566 6.11094 6.39859 6.70452 6.83569 6.87707 7.05330 8.19675 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.004328 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.211903 B = 6468.271554 C = 6566.365003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.134 4.134 3 C 0.164 3.836 4 N -0.749 5.749 5 C 0.245 3.755 6 C -0.290 4.290 7 C -0.046 4.046 8 C -0.296 4.296 9 C 0.107 3.893 10 C -0.494 4.494 11 H 0.051 0.949 12 C 0.053 3.947 13 N -0.848 5.848 14 Si 0.969 3.031 15 H -0.254 1.254 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.300 4.300 19 C -0.123 4.123 20 C 0.163 3.837 21 F -0.176 7.176 22 F -0.171 7.171 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.393 0.607 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.293 0.707 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -16.545 -14.754 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.136 4.136 3 C 0.040 3.960 4 N -0.380 5.380 5 C 0.143 3.857 6 C -0.313 4.313 7 C -0.065 4.065 8 C -0.317 4.317 9 C 0.104 3.896 10 C -0.524 4.524 11 H 0.069 0.931 12 C -0.162 4.162 13 N -0.475 5.475 14 Si 0.793 3.207 15 H -0.179 1.179 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.324 4.324 19 C -0.161 4.161 20 C 0.126 3.874 21 F -0.157 7.157 22 F -0.152 7.152 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.227 0.773 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.171 0.829 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.483 -16.409 -14.713 22.044 hybrid contribution 0.228 0.140 1.311 1.338 sum 0.711 -16.268 -13.402 21.090 Atomic orbital electron populations 1.21354 0.88795 1.03646 1.03592 1.23146 0.98104 0.91229 1.01074 1.20808 0.98675 0.89017 0.87476 1.44452 1.63761 1.10819 1.18987 1.17574 0.91378 0.84114 0.92669 1.20342 1.13537 0.96729 1.00669 1.20779 0.95870 0.94195 0.95631 1.21024 1.13793 1.00036 0.96826 1.17582 0.89069 0.90914 0.92032 1.19440 1.09518 1.16166 1.07235 0.93126 1.26792 1.04708 0.91622 0.93057 1.69765 1.39250 1.10542 1.27905 0.85466 0.76975 0.80284 0.78000 1.17930 1.20341 1.18568 1.20481 1.17132 0.95837 0.98980 1.24644 1.04793 0.98438 0.88221 1.20684 0.81022 0.95043 0.90622 1.93010 1.45692 1.92864 1.84137 1.92979 1.72499 1.65617 1.84073 0.89143 0.90368 0.92548 0.92243 0.89603 0.77296 0.85342 0.85462 0.88926 0.89642 0.89348 0.82913 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.39 71.98 0.68 -1.12 16 2 C -0.13 -2.33 2.13 -52.18 -0.11 -2.45 16 3 C 0.16 3.72 4.50 86.38 0.39 4.11 16 4 N -0.75 -23.53 5.65 -339.58 -1.92 -25.45 16 5 C 0.24 9.94 6.64 38.16 0.25 10.19 16 6 C -0.29 -11.12 9.30 22.59 0.21 -10.91 16 7 C -0.05 -1.91 10.01 22.19 0.22 -1.69 16 8 C -0.30 -14.60 7.39 22.75 0.17 -14.43 16 9 C 0.11 5.78 5.09 -21.31 -0.11 5.67 16 10 C -0.49 -29.24 9.54 23.46 0.22 -29.02 16 11 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 12 C 0.05 2.97 5.34 85.25 0.46 3.42 16 13 N -0.85 -48.18 13.93 21.82 0.30 -47.88 16 14 Si 0.97 44.96 24.75 68.60 1.70 46.66 16 15 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 18 C -0.30 -14.65 9.63 22.86 0.22 -14.43 16 19 C -0.12 -1.43 9.90 30.62 0.30 -1.13 16 20 C 0.16 3.40 5.14 30.62 0.16 3.56 16 21 F -0.18 -4.81 16.99 44.97 0.76 -4.05 16 22 F -0.17 -3.95 16.90 44.97 0.76 -3.19 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 1.00 7.76 -2.39 -0.02 0.98 16 25 H 0.06 1.06 7.85 -2.39 -0.02 1.04 16 26 H 0.06 1.38 7.85 -2.39 -0.02 1.36 16 27 H 0.09 1.76 7.71 -2.39 -0.02 1.74 16 28 H 0.39 12.15 8.18 -92.71 -0.76 11.39 16 29 H 0.13 3.97 6.69 -2.91 -0.02 3.95 16 30 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.09 4.59 4.84 -2.91 -0.01 4.58 16 32 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 33 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 34 H 0.15 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.39 300.74 4.97 -61.42 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.30 Total: 20.70 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 3.06 Total: -48.21 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.61 Total: -73.33 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 1.52 Total: -7.24 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.70 Total: 46.66 kcal Total: -66.39 4.97 -61.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689139662.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.602 kcal (2) G-P(sol) polarization free energy of solvation -66.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds