Wall clock time and date at job start Mon Mar 30 2020 06:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38103 * 119.97120 * 2 1 4 4 C 1.38897 * 119.94231 * 180.02562 * 3 2 1 5 5 N 1.39741 * 120.06574 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99913 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47391 * 325.00007 * 6 5 4 8 8 C 1.53000 * 109.46840 * 85.00337 * 6 5 4 9 9 C 1.53002 * 109.46799 * 205.00103 * 6 5 4 10 10 C 1.50696 * 109.47344 * 65.00157 * 9 6 5 11 11 H 1.08002 * 119.99611 * 0.02562 * 10 9 6 12 12 C 1.37875 * 119.99982 * 179.97438 * 10 9 6 13 13 N 1.31514 * 119.99909 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99930 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47112 * 89.99958 * 14 12 10 16 16 H 1.48507 * 109.47446 * 210.00251 * 14 12 10 17 17 H 1.48501 * 109.47194 * 330.00187 * 14 12 10 18 18 C 1.38897 * 119.87279 * 0.27505 * 4 3 2 19 19 C 1.38110 * 119.93744 * 359.42784 * 18 4 3 20 20 C 1.50700 * 119.97166 * 180.27226 * 19 18 4 21 21 C 1.38376 * 119.96541 * 180.02562 * 2 1 3 22 22 Cl 1.73606 * 119.94362 * 359.97438 * 21 2 1 23 23 H 1.08993 * 109.47012 * 89.99611 * 1 2 3 24 24 H 1.09000 * 109.46888 * 210.00244 * 1 2 3 25 25 H 1.09003 * 109.46737 * 329.99191 * 1 2 3 26 26 H 1.08006 * 120.03154 * 0.04881 * 3 2 1 27 27 H 0.97002 * 119.99676 * 0.02562 * 5 4 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47194 * 299.99493 * 8 6 5 30 30 H 1.08992 * 109.47399 * 59.99666 * 8 6 5 31 31 H 1.09008 * 109.46873 * 185.00266 * 9 6 5 32 32 H 1.08997 * 109.47047 * 304.99955 * 9 6 5 33 33 H 0.97003 * 119.99535 * 179.97438 * 13 12 10 34 34 H 1.07999 * 120.03562 * 179.70231 * 18 4 3 35 35 H 1.09000 * 109.47293 * 270.32258 * 20 19 18 36 36 H 1.09003 * 109.46808 * 30.32217 * 20 19 18 37 37 H 1.09007 * 109.47488 * 150.32010 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1964 0.0000 4 6 3.5860 1.1957 -0.0005 5 7 4.2867 2.4047 0.0000 6 6 5.7516 2.4022 0.0000 7 1 6.1136 1.5596 0.5891 8 6 6.2614 2.2764 -1.4371 9 6 6.2638 3.7085 0.6103 10 6 5.8652 3.7749 2.0620 11 1 5.3032 2.9661 2.5053 12 6 6.2189 4.8677 2.8247 13 7 6.9037 5.8523 2.2850 14 14 5.7255 4.9497 4.6244 15 1 6.7901 4.3356 5.4581 16 1 5.5411 6.3684 5.0231 17 1 4.4531 4.2104 4.8231 18 6 4.2772 -0.0091 -0.0069 19 6 3.5821 -1.2025 -0.0006 20 6 4.3313 -2.5101 -0.0013 21 6 2.1982 -1.1988 -0.0005 22 17 1.3278 -2.7009 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5140 26 1 1.6570 2.1317 0.0008 27 1 3.8030 3.2455 0.0011 28 1 7.3514 2.2741 -1.4370 29 1 5.8965 1.3458 -1.8718 30 1 5.8994 3.1190 -2.0261 31 1 7.3502 3.7458 0.5296 32 1 5.8305 4.5537 0.0755 33 1 7.1522 6.6213 2.8216 34 1 5.3571 -0.0127 -0.0121 35 1 4.5119 -2.8249 -1.0291 36 1 5.2842 -2.3831 0.5126 37 1 3.7398 -3.2681 0.5123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695863237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:54 Heat of formation + Delta-G solvation = -9.432414 kcal Electronic energy + Delta-G solvation = -17925.219601 eV Core-core repulsion = 15112.982971 eV Total energy + Delta-G solvation = -2812.236630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52939 -36.86302 -35.76649 -33.44889 -33.07912 -31.58572 -28.49688 -27.54697 -26.77503 -26.47960 -23.30325 -21.29270 -21.00628 -19.48236 -16.67135 -16.35436 -16.12255 -15.65337 -14.62131 -14.32872 -14.17308 -13.60774 -13.12503 -13.10201 -12.84816 -12.65680 -12.51900 -12.05112 -11.89230 -11.84504 -11.68440 -11.54874 -11.41038 -11.22887 -11.03803 -10.77466 -10.61691 -10.41750 -10.19999 -9.51515 -9.37447 -9.04178 -8.46977 -8.38910 -6.86845 -6.09670 -4.12213 1.59576 1.75847 2.54252 3.26933 3.33912 3.38035 3.98076 4.03604 4.39345 4.92715 4.94797 5.27104 5.38839 5.51341 5.55333 5.66216 5.69310 5.70616 5.72687 5.90401 5.92266 5.92987 5.98440 6.14569 6.30251 6.34060 6.55575 6.57079 6.62428 6.73736 6.77128 7.02744 7.42971 7.49342 7.87292 7.96507 8.28265 8.33559 8.94176 9.53051 11.01198 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.004739 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.725964 B = 5906.835714 C = 6321.633615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.024 4.024 3 C -0.206 4.206 4 C 0.249 3.751 5 N -0.710 5.710 6 C 0.145 3.855 7 H 0.069 0.931 8 C -0.165 4.165 9 C 0.016 3.984 10 C -0.518 4.518 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.202 4.202 19 C -0.024 4.024 20 C -0.117 4.117 21 C -0.114 4.114 22 Cl -0.094 7.094 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.124 0.876 27 H 0.402 0.598 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.021 0.979 33 H 0.261 0.739 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 -12.788 -6.555 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.025 4.025 3 C -0.229 4.229 4 C 0.140 3.860 5 N -0.333 5.333 6 C 0.040 3.960 7 H 0.087 0.913 8 C -0.223 4.223 9 C -0.022 4.022 10 C -0.556 4.556 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.225 4.225 19 C -0.025 4.025 20 C -0.174 4.174 21 C -0.143 4.143 22 Cl -0.065 7.065 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.142 0.858 27 H 0.237 0.763 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.163 -12.708 -6.509 16.446 hybrid contribution -0.401 0.482 1.078 1.247 sum -8.564 -12.226 -5.431 15.884 Atomic orbital electron populations 1.20833 0.91074 1.03002 1.02393 1.19315 0.95727 0.90930 0.96569 1.20324 0.92115 0.97323 1.13162 1.17977 0.90870 0.87220 0.89949 1.45090 1.06313 1.04485 1.77453 1.21258 0.78539 1.02045 0.94120 0.91340 1.22293 1.00936 1.00917 0.98185 1.19394 0.96976 0.90107 0.95687 1.21169 1.35078 1.04352 0.94995 0.92466 1.24997 0.95107 0.95722 0.98452 1.69955 1.38658 1.08459 1.36332 0.86612 0.79043 0.77150 0.85339 1.20636 1.21252 1.19880 1.20464 0.99827 0.89895 1.12329 1.19379 0.91289 0.95482 0.96363 1.20841 0.99999 0.94105 1.02423 1.20133 0.91182 0.85509 1.17432 1.98274 1.76874 1.33782 1.97582 0.91080 0.91124 0.91423 0.85799 0.76308 0.92182 0.93595 0.92895 0.95060 0.96060 0.92929 0.85300 0.91053 0.91331 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.61 36.01 0.35 -0.99 16 2 C -0.02 -0.34 5.88 -104.62 -0.62 -0.96 16 3 C -0.21 -3.16 9.55 -39.39 -0.38 -3.53 16 4 C 0.25 4.17 6.64 -83.76 -0.56 3.61 16 5 N -0.71 -12.67 4.96 -52.15 -0.26 -12.92 16 6 C 0.14 2.74 2.21 -67.93 -0.15 2.59 16 7 H 0.07 1.33 6.50 -51.93 -0.34 0.99 16 8 C -0.16 -2.66 9.42 37.16 0.35 -2.31 16 9 C 0.02 0.37 4.52 -27.88 -0.13 0.24 16 10 C -0.52 -13.77 8.84 -34.44 -0.30 -14.08 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 14 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.20 -3.22 8.49 -39.38 -0.33 -3.56 16 19 C -0.02 -0.35 5.88 -104.61 -0.62 -0.96 16 20 C -0.12 -1.39 9.61 36.01 0.35 -1.05 16 21 C -0.11 -1.66 6.31 -39.48 -0.25 -1.91 16 22 Cl -0.09 -1.19 25.61 -51.86 -1.33 -2.52 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.79 6.90 -51.93 -0.36 0.43 16 25 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 26 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 27 H 0.40 7.15 8.62 -40.82 -0.35 6.80 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.68 7.67 -51.93 -0.40 0.28 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.13 2.01 6.09 -52.49 -0.32 1.69 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.07 0.80 6.89 -51.92 -0.36 0.45 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -28.09 318.93 -8.91 -37.00 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.46 Total: 3.82 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.38 Total: -21.37 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.48 Total: -38.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.33 Total: -2.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.09 -8.91 -37.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695863237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.573 kcal (2) G-P(sol) polarization free energy of solvation -28.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds