Wall clock time and date at job start Mon Mar 30 2020 06:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38103 * 119.97120 * 2 1 4 4 C 1.38897 * 119.94231 * 180.02562 * 3 2 1 5 5 N 1.39741 * 120.06574 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99913 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.47391 * 325.00007 * 6 5 4 8 8 C 1.53000 * 109.46840 * 85.00337 * 6 5 4 9 9 C 1.53002 * 109.46799 * 205.00103 * 6 5 4 10 10 C 1.50696 * 109.47344 * 65.00157 * 9 6 5 11 11 H 1.08002 * 119.99611 * 0.02562 * 10 9 6 12 12 C 1.37875 * 119.99982 * 179.97438 * 10 9 6 13 13 N 1.31514 * 119.99909 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99930 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47112 * 89.99958 * 14 12 10 16 16 H 1.48507 * 109.47446 * 210.00251 * 14 12 10 17 17 H 1.48501 * 109.47194 * 330.00187 * 14 12 10 18 18 C 1.38897 * 119.87279 * 0.27505 * 4 3 2 19 19 C 1.38110 * 119.93744 * 359.42784 * 18 4 3 20 20 C 1.50700 * 119.97166 * 180.27226 * 19 18 4 21 21 C 1.38376 * 119.96541 * 180.02562 * 2 1 3 22 22 Cl 1.73606 * 119.94362 * 359.97438 * 21 2 1 23 23 H 1.08993 * 109.47012 * 89.99611 * 1 2 3 24 24 H 1.09000 * 109.46888 * 210.00244 * 1 2 3 25 25 H 1.09003 * 109.46737 * 329.99191 * 1 2 3 26 26 H 1.08006 * 120.03154 * 0.04881 * 3 2 1 27 27 H 0.97002 * 119.99676 * 0.02562 * 5 4 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47194 * 299.99493 * 8 6 5 30 30 H 1.08992 * 109.47399 * 59.99666 * 8 6 5 31 31 H 1.09008 * 109.46873 * 185.00266 * 9 6 5 32 32 H 1.08997 * 109.47047 * 304.99955 * 9 6 5 33 33 H 0.97003 * 119.99535 * 179.97438 * 13 12 10 34 34 H 1.07999 * 120.03562 * 179.70231 * 18 4 3 35 35 H 1.09000 * 109.47293 * 270.32258 * 20 19 18 36 36 H 1.09003 * 109.46808 * 30.32217 * 20 19 18 37 37 H 1.09007 * 109.47488 * 150.32010 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1964 0.0000 4 6 3.5860 1.1957 -0.0005 5 7 4.2867 2.4047 0.0000 6 6 5.7516 2.4022 0.0000 7 1 6.1136 1.5596 0.5891 8 6 6.2614 2.2764 -1.4371 9 6 6.2638 3.7085 0.6103 10 6 5.8652 3.7749 2.0620 11 1 5.3032 2.9661 2.5053 12 6 6.2189 4.8677 2.8247 13 7 6.9037 5.8523 2.2850 14 14 5.7255 4.9497 4.6244 15 1 6.7901 4.3356 5.4581 16 1 5.5411 6.3684 5.0231 17 1 4.4531 4.2104 4.8231 18 6 4.2772 -0.0091 -0.0069 19 6 3.5821 -1.2025 -0.0006 20 6 4.3313 -2.5101 -0.0013 21 6 2.1982 -1.1988 -0.0005 22 17 1.3278 -2.7009 -0.0005 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5140 26 1 1.6570 2.1317 0.0008 27 1 3.8030 3.2455 0.0011 28 1 7.3514 2.2741 -1.4370 29 1 5.8965 1.3458 -1.8718 30 1 5.8994 3.1190 -2.0261 31 1 7.3502 3.7458 0.5296 32 1 5.8305 4.5537 0.0755 33 1 7.1522 6.6213 2.8216 34 1 5.3571 -0.0127 -0.0121 35 1 4.5119 -2.8249 -1.0291 36 1 5.2842 -2.3831 0.5126 37 1 3.7398 -3.2681 0.5123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695863237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:53 Heat of formation + Delta-G solvation = -23.023020 kcal Electronic energy + Delta-G solvation = -17925.808934 eV Core-core repulsion = 15112.982971 eV Total energy + Delta-G solvation = -2812.825963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.71809 -38.19389 -36.96207 -34.95113 -34.50518 -33.10812 -29.72576 -29.32206 -27.86407 -27.57847 -25.17107 -22.67624 -22.17445 -20.84432 -18.51748 -17.78668 -17.43470 -16.91550 -16.48186 -15.64934 -15.31049 -14.91474 -14.57701 -14.19541 -14.02155 -13.88679 -13.66889 -13.54135 -13.33254 -13.26136 -12.97327 -12.78245 -12.74673 -12.65699 -12.40098 -12.35421 -12.19798 -11.95306 -11.38008 -11.28356 -11.21451 -10.59180 -10.41091 -9.51631 -8.21885 -8.14396 -6.29097 0.44339 0.57585 1.37521 1.38938 1.43607 1.48976 2.39183 2.64691 2.83126 3.14547 3.85244 3.88903 4.19355 4.34719 4.40712 4.49181 4.49925 4.61526 4.63187 4.80977 4.83909 4.87896 4.90045 4.93491 5.07922 5.13109 5.26746 5.28393 5.39482 5.45663 5.46144 5.58689 5.61651 5.80139 5.90310 6.22351 6.57758 6.85232 6.95312 7.39771 8.90229 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.004739 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.725964 B = 5906.835714 C = 6321.633615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.028 4.028 3 C -0.214 4.214 4 C 0.231 3.769 5 N -0.719 5.719 6 C 0.158 3.842 7 H 0.063 0.937 8 C -0.154 4.154 9 C 0.022 3.978 10 C -0.524 4.524 11 H 0.052 0.948 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.953 3.047 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.271 1.271 18 C -0.215 4.215 19 C -0.028 4.028 20 C -0.116 4.116 21 C -0.122 4.122 22 Cl -0.076 7.076 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.133 0.867 27 H 0.399 0.601 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.010 0.990 32 H 0.002 0.998 33 H 0.262 0.738 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 -14.352 -6.429 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.029 4.029 3 C -0.237 4.237 4 C 0.124 3.876 5 N -0.343 5.343 6 C 0.053 3.947 7 H 0.081 0.919 8 C -0.213 4.213 9 C -0.015 4.015 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.779 3.221 15 H -0.201 1.201 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.238 4.238 19 C -0.030 4.030 20 C -0.172 4.172 21 C -0.150 4.150 22 Cl -0.047 7.047 23 H 0.103 0.897 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.151 0.849 27 H 0.233 0.767 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.146 0.854 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.382 -14.307 -6.387 18.262 hybrid contribution -0.090 0.876 1.018 1.346 sum -9.473 -13.431 -5.369 17.290 Atomic orbital electron populations 1.20886 0.89010 1.03715 1.03489 1.19659 0.97306 0.90491 0.95486 1.20505 0.91722 0.98281 1.13160 1.18171 0.91538 0.86872 0.91067 1.44927 1.05609 1.04935 1.78854 1.20926 0.79504 0.98844 0.95396 0.91911 1.22176 1.01258 1.01666 0.96193 1.19247 0.95548 0.92099 0.94642 1.21464 1.34359 1.03944 0.96413 0.92941 1.25778 0.95252 0.95548 1.02542 1.70064 1.39969 1.09099 1.37869 0.85627 0.78754 0.77194 0.80534 1.20080 1.20861 1.19519 1.20565 0.99955 0.90224 1.13026 1.19688 0.91712 0.96153 0.95444 1.20890 1.00040 0.92766 1.03497 1.20357 0.91507 0.86457 1.16725 1.98279 1.76426 1.32562 1.97479 0.89682 0.90680 0.90455 0.84923 0.76681 0.91552 0.91976 0.93012 0.97218 0.97992 0.92866 0.85394 0.89641 0.90698 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.61 71.24 0.68 -1.67 16 2 C -0.03 -0.75 5.88 -19.86 -0.12 -0.87 16 3 C -0.21 -6.33 9.55 22.40 0.21 -6.12 16 4 C 0.23 7.60 6.64 38.20 0.25 7.86 16 5 N -0.72 -25.73 4.96 -318.92 -1.58 -27.31 16 6 C 0.16 6.04 2.21 44.99 0.10 6.14 16 7 H 0.06 2.45 6.50 -2.39 -0.02 2.44 16 8 C -0.15 -4.89 9.42 71.98 0.68 -4.22 16 9 C 0.02 1.07 4.52 29.85 0.13 1.21 16 10 C -0.52 -28.23 8.84 25.60 0.23 -28.01 16 11 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 12 C 0.01 0.38 5.46 84.65 0.46 0.84 16 13 N -0.93 -54.50 13.29 21.45 0.28 -54.21 16 14 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 C -0.21 -6.66 8.49 22.40 0.19 -6.47 16 19 C -0.03 -0.79 5.88 -19.86 -0.12 -0.91 16 20 C -0.12 -2.50 9.61 71.24 0.68 -1.81 16 21 C -0.12 -3.31 6.31 22.34 0.14 -3.17 16 22 Cl -0.08 -1.75 25.61 -2.72 -0.07 -1.82 16 23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.48 6.90 -2.39 -0.02 1.46 16 25 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 26 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.40 14.43 8.62 -92.71 -0.80 13.63 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.77 7.67 -2.39 -0.02 1.75 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.13 3.90 6.09 -2.91 -0.02 3.88 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 37 H 0.08 1.55 6.89 -2.38 -0.02 1.54 16 Total: -1.00 -59.25 318.93 4.46 -54.79 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.27 Total: 19.89 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.53 Total: -37.19 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.30 Total: -81.52 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.07 Total: -1.82 kcal Total: -59.25 4.46 -54.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695863237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.768 kcal (2) G-P(sol) polarization free energy of solvation -59.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds