Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48500 * 109.46972 * 240.00098 * 3 2 1 5 5 H 1.48503 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47072 * 120.00384 * 3 2 1 7 7 C 1.37876 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99996 * 182.51800 * 7 2 1 9 9 C 1.50698 * 119.99819 * 2.51566 * 7 2 1 10 10 H 1.09000 * 109.47074 * 174.80665 * 9 7 2 11 11 N 1.46904 * 109.47204 * 54.80653 * 9 7 2 12 12 C 1.46906 * 110.99769 * 85.00017 * 11 9 7 13 13 C 1.53779 * 113.61623 * 155.00179 * 12 11 9 14 14 C 1.53780 * 87.08286 * 139.97716 * 13 12 11 15 15 F 1.39901 * 113.61264 * 89.11604 * 14 13 12 16 16 F 1.39899 * 113.61425 * 220.02026 * 14 13 12 17 17 C 1.53787 * 113.61075 * 252.50143 * 12 11 9 18 18 C 1.50700 * 109.47385 * 294.80592 * 9 7 2 19 19 C 1.38228 * 120.00250 * 270.26806 * 18 9 7 20 20 C 1.38237 * 120.00053 * 179.79218 * 19 18 9 21 21 C 1.38234 * 120.00042 * 0.43234 * 20 19 18 22 22 C 1.38238 * 119.99872 * 359.81751 * 21 20 19 23 23 C 1.38236 * 119.99751 * 90.53791 * 18 9 7 24 24 H 0.97007 * 119.99852 * 359.97438 * 1 2 3 25 25 H 1.00897 * 110.99831 * 321.04584 * 11 9 7 26 26 H 1.08998 * 112.90665 * 23.74720 * 12 11 9 27 27 H 1.08997 * 113.61198 * 254.53041 * 13 12 11 28 28 H 1.09001 * 113.61280 * 25.42704 * 13 12 11 29 29 H 1.08995 * 113.61276 * 334.55850 * 17 12 11 30 30 H 1.08995 * 113.61958 * 105.38881 * 17 12 11 31 31 H 1.07999 * 119.99765 * 359.97438 * 19 18 9 32 32 H 1.07996 * 120.00064 * 180.27565 * 20 19 18 33 33 H 1.08002 * 119.99971 * 179.84053 * 21 20 19 34 34 H 1.08001 * 120.00030 * 179.97438 * 22 21 20 35 35 H 1.08005 * 119.99977 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0837 -1.1945 0.0406 9 6 1.2521 -2.4984 -0.0584 10 1 1.9601 -3.3228 -0.1431 11 7 0.3597 -2.4976 -1.2253 12 6 1.0739 -2.9285 -2.4346 13 6 0.1553 -3.5299 -3.5112 14 6 1.0077 -2.7777 -4.5469 15 9 2.1071 -3.5107 -5.0065 16 9 0.2588 -2.2112 -5.5839 17 6 1.3547 -1.7855 -3.4243 18 6 0.4363 -2.6640 1.1978 19 6 0.9855 -3.2898 2.3012 20 6 0.2385 -3.4378 3.4549 21 6 -1.0606 -2.9679 3.5022 22 6 -1.6116 -2.3466 2.3971 23 6 -0.8632 -2.1949 1.2448 24 1 -0.4850 0.8401 0.0004 25 1 -0.0612 -1.5903 -1.3579 26 1 1.9486 -3.5408 -2.2152 27 1 0.2279 -4.6146 -3.5909 28 1 -0.8743 -3.1767 -3.4537 29 1 0.6529 -0.9554 -3.3431 30 1 2.3951 -1.4609 -3.4329 31 1 1.9991 -3.6605 2.2628 32 1 0.6691 -3.9228 4.3185 33 1 -1.6451 -3.0859 4.4028 34 1 -2.6268 -1.9799 2.4339 35 1 -1.2936 -1.7094 0.3813 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697533802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = -50.464674 kcal Electronic energy + Delta-G solvation = -20530.520977 eV Core-core repulsion = 17164.708375 eV Total energy + Delta-G solvation = -3365.812602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.43702 -46.78605 -38.48035 -37.49652 -34.45164 -31.43412 -29.86243 -29.32110 -26.42203 -25.70448 -23.42188 -22.30308 -21.28000 -19.94985 -19.53876 -17.16430 -16.64135 -16.15555 -15.83943 -15.74673 -14.99499 -14.55928 -14.01981 -13.70205 -13.66051 -13.38630 -13.07540 -12.96493 -12.38934 -12.28648 -12.09069 -11.81257 -11.64940 -11.54033 -11.10427 -10.94442 -10.80798 -10.70191 -10.32286 -10.03500 -9.98467 -9.74374 -9.58836 -8.78680 -7.82805 -7.47669 -7.24394 -6.15377 -4.41335 2.50107 2.61626 3.16137 3.22434 3.25520 3.91402 4.21522 4.26566 4.73999 4.81996 4.94587 5.05405 5.16397 5.67475 5.81965 5.85842 5.94162 5.96897 6.00367 6.08727 6.15528 6.28069 6.42786 6.59566 6.66571 6.78363 6.85805 7.12638 7.26888 7.51445 7.57523 7.73391 7.87634 7.97802 8.22014 8.28356 8.71050 8.89088 9.30966 10.70743 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.007182 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.727334 B = 3897.842602 C = 4872.810948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.058 0.942 9 C 0.238 3.762 10 H 0.038 0.962 11 N -0.671 5.671 12 C 0.095 3.905 13 C -0.157 4.157 14 C 0.242 3.758 15 F -0.188 7.188 16 F -0.200 7.200 17 C -0.181 4.181 18 C -0.021 4.021 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.147 4.147 23 C -0.052 4.052 24 H 0.269 0.731 25 H 0.371 0.629 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.979 -4.274 -2.638 5.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.578 4.578 8 H 0.077 0.923 9 C 0.129 3.871 10 H 0.057 0.943 11 N -0.306 5.306 12 C -0.018 4.018 13 C -0.196 4.196 14 C 0.205 3.795 15 F -0.169 7.169 16 F -0.181 7.181 17 C -0.221 4.221 18 C -0.022 4.022 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.170 4.170 22 C -0.166 4.166 23 C -0.071 4.071 24 H 0.079 0.921 25 H 0.199 0.801 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.403 -4.735 -2.529 5.548 hybrid contribution 1.157 1.916 -0.188 2.246 sum -0.246 -2.819 -2.717 3.923 Atomic orbital electron populations 1.69570 1.05592 1.27162 1.49481 1.24968 0.94942 0.99162 0.93863 0.86652 0.79798 0.82872 0.78805 1.20175 1.21025 1.20175 1.21664 0.93546 0.90948 1.51620 0.92331 1.18185 0.88752 0.94841 0.85281 0.94343 1.60778 1.31606 1.37071 1.01185 1.22489 0.94984 0.94238 0.90065 1.24257 1.01074 1.01119 0.93151 1.22344 0.82067 0.93097 0.81999 1.92963 1.54909 1.78367 1.90643 1.92958 1.76356 1.85606 1.63179 1.24793 1.04660 0.99390 0.93240 1.20148 0.93718 0.92377 0.95934 1.20831 0.98954 1.01696 0.93809 1.20748 0.95020 1.02890 0.97519 1.20770 0.95831 1.02427 0.98021 1.21091 0.99354 1.01466 0.94666 1.21312 0.93605 0.94333 0.97818 0.92089 0.80111 0.88782 0.89775 0.87229 0.87377 0.89589 0.87874 0.88147 0.88346 0.88128 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.09 7.97 55.43 0.44 -20.65 16 2 C 0.07 1.78 5.05 -17.82 -0.09 1.69 16 3 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -13.04 8.74 -34.44 -0.30 -13.34 16 8 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.24 5.30 2.49 -70.02 -0.17 5.12 16 10 H 0.04 0.84 7.41 -51.93 -0.38 0.45 16 11 N -0.67 -13.72 5.51 -101.32 -0.56 -14.28 16 12 C 0.10 1.69 4.03 -66.89 -0.27 1.42 16 13 C -0.16 -2.41 7.67 -25.92 -0.20 -2.61 16 14 C 0.24 3.91 3.28 -25.92 -0.08 3.82 16 15 F -0.19 -3.11 17.38 2.25 0.04 -3.08 16 16 F -0.20 -3.36 17.41 2.25 0.04 -3.32 16 17 C -0.18 -3.12 7.48 -25.91 -0.19 -3.31 16 18 C -0.02 -0.46 4.79 -104.63 -0.50 -0.96 16 19 C -0.13 -2.79 9.70 -39.59 -0.38 -3.17 16 20 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 21 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 22 C -0.15 -2.96 10.05 -39.58 -0.40 -3.35 16 23 C -0.05 -1.15 7.66 -39.58 -0.30 -1.45 16 24 H 0.27 6.32 8.31 -40.82 -0.34 5.99 16 25 H 0.37 8.12 4.99 -39.29 -0.20 7.93 16 26 H 0.09 1.66 7.48 -51.93 -0.39 1.27 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.11 1.93 7.82 -51.93 -0.41 1.52 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.14 3.30 5.59 -52.48 -0.29 3.00 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -24.22 296.25 -8.46 -32.68 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -4.17 Total: 12.13 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -3.69 Total: -22.54 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.12 Total: -34.93 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.08 Total: -6.40 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -24.22 -8.46 -32.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697533802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.780 kcal (2) G-P(sol) polarization free energy of solvation -24.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds