Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48500 * 109.46972 * 240.00098 * 3 2 1 5 5 H 1.48503 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47072 * 120.00384 * 3 2 1 7 7 C 1.37876 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99996 * 182.51800 * 7 2 1 9 9 C 1.50698 * 119.99819 * 2.51566 * 7 2 1 10 10 H 1.09000 * 109.47074 * 174.80665 * 9 7 2 11 11 N 1.46904 * 109.47204 * 54.80653 * 9 7 2 12 12 C 1.46906 * 110.99769 * 85.00017 * 11 9 7 13 13 C 1.53779 * 113.61623 * 155.00179 * 12 11 9 14 14 C 1.53780 * 87.08286 * 139.97716 * 13 12 11 15 15 F 1.39901 * 113.61264 * 89.11604 * 14 13 12 16 16 F 1.39899 * 113.61425 * 220.02026 * 14 13 12 17 17 C 1.53787 * 113.61075 * 252.50143 * 12 11 9 18 18 C 1.50700 * 109.47385 * 294.80592 * 9 7 2 19 19 C 1.38228 * 120.00250 * 270.26806 * 18 9 7 20 20 C 1.38237 * 120.00053 * 179.79218 * 19 18 9 21 21 C 1.38234 * 120.00042 * 0.43234 * 20 19 18 22 22 C 1.38238 * 119.99872 * 359.81751 * 21 20 19 23 23 C 1.38236 * 119.99751 * 90.53791 * 18 9 7 24 24 H 0.97007 * 119.99852 * 359.97438 * 1 2 3 25 25 H 1.00897 * 110.99831 * 321.04584 * 11 9 7 26 26 H 1.08998 * 112.90665 * 23.74720 * 12 11 9 27 27 H 1.08997 * 113.61198 * 254.53041 * 13 12 11 28 28 H 1.09001 * 113.61280 * 25.42704 * 13 12 11 29 29 H 1.08995 * 113.61276 * 334.55850 * 17 12 11 30 30 H 1.08995 * 113.61958 * 105.38881 * 17 12 11 31 31 H 1.07999 * 119.99765 * 359.97438 * 19 18 9 32 32 H 1.07996 * 120.00064 * 180.27565 * 20 19 18 33 33 H 1.08002 * 119.99971 * 179.84053 * 21 20 19 34 34 H 1.08001 * 120.00030 * 179.97438 * 22 21 20 35 35 H 1.08005 * 119.99977 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0837 -1.1945 0.0406 9 6 1.2521 -2.4984 -0.0584 10 1 1.9601 -3.3228 -0.1431 11 7 0.3597 -2.4976 -1.2253 12 6 1.0739 -2.9285 -2.4346 13 6 0.1553 -3.5299 -3.5112 14 6 1.0077 -2.7777 -4.5469 15 9 2.1071 -3.5107 -5.0065 16 9 0.2588 -2.2112 -5.5839 17 6 1.3547 -1.7855 -3.4243 18 6 0.4363 -2.6640 1.1978 19 6 0.9855 -3.2898 2.3012 20 6 0.2385 -3.4378 3.4549 21 6 -1.0606 -2.9679 3.5022 22 6 -1.6116 -2.3466 2.3971 23 6 -0.8632 -2.1949 1.2448 24 1 -0.4850 0.8401 0.0004 25 1 -0.0612 -1.5903 -1.3579 26 1 1.9486 -3.5408 -2.2152 27 1 0.2279 -4.6146 -3.5909 28 1 -0.8743 -3.1767 -3.4537 29 1 0.6529 -0.9554 -3.3431 30 1 2.3951 -1.4609 -3.4329 31 1 1.9991 -3.6605 2.2628 32 1 0.6691 -3.9228 4.3185 33 1 -1.6451 -3.0859 4.4028 34 1 -2.6268 -1.9799 2.4339 35 1 -1.2936 -1.7094 0.3813 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697533802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = -60.765982 kcal Electronic energy + Delta-G solvation = -20530.967675 eV Core-core repulsion = 17164.708375 eV Total energy + Delta-G solvation = -3366.259300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.77726 -48.12589 -40.03401 -38.94496 -36.09462 -33.18819 -31.41540 -30.86092 -28.16494 -27.04499 -25.00175 -23.85103 -22.81458 -21.55327 -20.95000 -18.61364 -18.34838 -17.53369 -17.31025 -17.10629 -16.75713 -16.04865 -15.61740 -15.26348 -15.00480 -14.90404 -14.56140 -14.42431 -13.89256 -13.81440 -13.47494 -13.43131 -13.22193 -13.18554 -12.81690 -12.58038 -12.31498 -12.25633 -11.95366 -11.66625 -11.42453 -11.28939 -11.21482 -10.59451 -9.39663 -9.08580 -8.88454 -7.94991 -6.28344 0.92191 1.06151 1.38409 1.43191 1.46726 2.39650 2.57286 2.91962 3.10179 3.38378 3.43141 3.49019 3.74542 4.19316 4.39858 4.43153 4.48188 4.62846 4.63841 4.67516 4.80558 4.85838 4.91641 4.98171 5.17125 5.26726 5.27131 5.56094 5.67787 5.73428 5.96065 6.08459 6.12933 6.37103 6.53712 6.63314 6.95780 7.17899 7.45444 8.85091 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.007182 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.727334 B = 3897.842602 C = 4872.810948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.047 3.953 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.554 4.554 8 H 0.044 0.956 9 C 0.239 3.761 10 H 0.033 0.967 11 N -0.669 5.669 12 C 0.085 3.915 13 C -0.141 4.141 14 C 0.250 3.750 15 F -0.188 7.188 16 F -0.201 7.201 17 C -0.181 4.181 18 C -0.046 4.046 19 C -0.151 4.151 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.070 4.070 24 H 0.267 0.733 25 H 0.363 0.637 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -4.838 -1.976 5.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.155 4.155 3 Si 0.760 3.240 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.593 4.593 8 H 0.063 0.937 9 C 0.130 3.870 10 H 0.051 0.949 11 N -0.304 5.304 12 C -0.027 4.027 13 C -0.180 4.180 14 C 0.213 3.787 15 F -0.169 7.169 16 F -0.182 7.182 17 C -0.221 4.221 18 C -0.047 4.047 19 C -0.170 4.170 20 C -0.160 4.160 21 C -0.168 4.168 22 C -0.174 4.174 23 C -0.089 4.089 24 H 0.077 0.923 25 H 0.189 0.811 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.957 -5.311 -1.880 5.964 hybrid contribution 1.338 2.067 -0.357 2.488 sum -0.619 -3.244 -2.236 3.988 Atomic orbital electron populations 1.69681 1.05823 1.27186 1.49306 1.25346 0.95539 1.00659 0.93977 0.86013 0.78846 0.80902 0.78194 1.20112 1.20861 1.21087 1.21778 0.93027 0.92271 1.52185 0.93743 1.18118 0.88897 0.93671 0.86328 0.94861 1.60788 1.31525 1.36388 1.01673 1.22603 0.95684 0.94758 0.89692 1.24145 1.00592 1.02217 0.91002 1.22193 0.82068 0.92702 0.81729 1.92966 1.55047 1.78264 1.90637 1.92957 1.76353 1.85691 1.63232 1.24729 1.04179 0.99303 0.93918 1.20274 0.94207 0.93756 0.96434 1.21069 0.99675 1.01979 0.94241 1.21131 0.95046 1.02089 0.97761 1.21168 0.95996 1.00948 0.98690 1.21368 1.00190 1.01398 0.94430 1.21245 0.93942 0.95340 0.98339 0.92312 0.81103 0.88882 0.87723 0.86729 0.88153 0.90073 0.87208 0.84995 0.84957 0.86254 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.52 7.97 21.45 0.17 -42.35 16 2 C 0.05 2.28 5.05 84.65 0.43 2.71 16 3 Si 0.93 40.33 29.54 68.60 2.03 42.36 16 4 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.55 -27.19 8.74 25.60 0.22 -26.97 16 8 H 0.04 2.24 7.81 -2.91 -0.02 2.22 16 9 C 0.24 10.78 2.49 43.42 0.11 10.89 16 10 H 0.03 1.48 7.41 -2.39 -0.02 1.46 16 11 N -0.67 -27.59 5.51 -474.46 -2.61 -30.20 16 12 C 0.09 2.99 4.03 45.44 0.18 3.18 16 13 C -0.14 -4.12 7.67 31.12 0.24 -3.88 16 14 C 0.25 7.79 3.28 31.12 0.10 7.89 16 15 F -0.19 -5.98 17.38 44.97 0.78 -5.20 16 16 F -0.20 -6.49 17.41 44.97 0.78 -5.71 16 17 C -0.18 -6.22 7.48 31.13 0.23 -5.99 16 18 C -0.05 -2.04 4.79 -19.87 -0.10 -2.14 16 19 C -0.15 -6.14 9.70 22.27 0.22 -5.92 16 20 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 21 C -0.15 -5.20 10.05 22.27 0.22 -4.97 16 22 C -0.16 -5.98 10.05 22.27 0.22 -5.76 16 23 C -0.07 -3.07 7.66 22.27 0.17 -2.90 16 24 H 0.27 12.58 8.31 -92.70 -0.77 11.81 16 25 H 0.36 16.08 4.99 -89.70 -0.45 15.63 16 26 H 0.09 3.28 7.48 -2.39 -0.02 3.26 16 27 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.11 3.28 8.14 -2.39 -0.02 3.27 16 29 H 0.10 3.61 7.82 -2.39 -0.02 3.59 16 30 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 32 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 34 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 35 H 0.13 5.93 5.59 -2.91 -0.02 5.92 16 Total: -1.00 -50.33 296.25 4.28 -46.05 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.66 Total: 33.73 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 2.48 Total: -38.69 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -2.44 Total: -72.55 kcal Atomic # 9 Polarization: -12.47 SS G_CDS: 1.56 Total: -10.91 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -50.33 4.28 -46.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697533802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.716 kcal (2) G-P(sol) polarization free energy of solvation -50.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds