Wall clock time and date at job start Mon Mar 30 2020 07:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.50698 * 109.47216 * 184.99588 * 4 2 1 6 6 H 1.07999 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47261 * 60.00176 * 9 7 5 11 11 H 1.48499 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47160 * 300.00320 * 9 7 5 13 13 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 14 14 C 1.46905 * 110.99870 * 84.99904 * 13 2 1 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 2 16 16 C 1.50698 * 109.47393 * 180.02562 * 15 14 13 17 17 C 1.38262 * 119.99481 * 269.72362 * 16 15 14 18 18 C 1.38215 * 120.03081 * 179.76019 * 17 16 15 19 19 C 1.38240 * 120.01171 * 0.51147 * 18 17 16 20 20 C 1.38329 * 119.98427 * 359.74617 * 19 18 17 21 21 Cl 1.73597 * 120.01178 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99449 * 89.99590 * 16 15 14 23 23 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 26 26 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 27 27 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 28 28 H 0.96998 * 119.99857 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00067 * 208.95080 * 13 2 1 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 32 32 H 1.09001 * 109.47393 * 299.99719 * 15 14 13 33 33 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 34 34 H 1.08003 * 119.98608 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.00149 * 180.25302 * 18 17 16 36 36 H 1.08004 * 120.00682 * 179.76060 * 19 18 17 37 37 H 1.07993 * 120.00800 * 359.96057 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1927 2.3582 8 7 3.5763 -1.8370 3.3000 9 14 6.0919 -1.0604 2.4372 10 1 6.4844 0.3706 2.4965 11 1 6.5870 -1.7605 3.6497 12 1 6.6845 -1.6865 1.2280 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 6 2.6600 0.4059 -4.7514 17 6 1.5669 0.5438 -5.5868 18 6 1.6240 1.4085 -6.6636 19 6 2.7779 2.1280 -6.9122 20 6 3.8737 1.9864 -6.0799 21 17 5.3229 2.8901 -6.3911 22 6 3.8141 1.1246 -4.9989 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 4.0607 -2.2437 4.0354 29 1 2.9173 -1.1204 -1.0288 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5903 -0.9270 -3.3692 33 1 1.9183 -1.3563 -3.8030 34 1 0.6668 -0.0217 -5.3958 35 1 0.7685 1.5189 -7.3134 36 1 2.8238 2.8007 -7.7559 37 1 4.6692 1.0140 -4.3486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702936622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:35 Heat of formation + Delta-G solvation = -8.784489 kcal Electronic energy + Delta-G solvation = -17325.174716 eV Core-core repulsion = 14512.966183 eV Total energy + Delta-G solvation = -2812.208534 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59700 -36.94933 -36.51551 -33.85380 -32.42869 -30.90675 -30.32484 -27.39602 -27.07809 -23.42838 -22.83515 -22.40141 -20.89545 -19.38692 -17.07037 -16.36700 -15.88724 -15.65364 -15.06263 -14.72011 -14.37328 -13.96529 -13.77179 -13.37047 -13.16642 -12.76255 -12.21083 -11.86992 -11.71200 -11.65552 -11.59209 -11.37706 -11.19298 -11.05001 -10.96863 -10.79527 -10.61332 -10.47344 -10.16019 -9.27944 -9.08347 -9.02253 -8.78069 -8.40210 -7.67364 -6.03537 -4.06948 0.99986 1.10454 1.96634 3.30253 3.35530 3.37265 3.45730 4.42322 4.50717 4.63384 4.85869 5.03519 5.14239 5.21441 5.29729 5.34967 5.49673 5.63921 5.69541 5.89287 5.95682 6.04480 6.09539 6.16837 6.19464 6.28446 6.32678 6.50201 6.55171 6.65681 6.92372 6.94542 7.51126 7.62489 7.95752 8.04518 8.25860 8.36518 8.99050 9.57354 11.07327 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.004097 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.702686 B = 6832.682205 C = 8038.362047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.029 0.971 4 C 0.021 3.979 5 C -0.525 4.525 6 H 0.051 0.949 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.066 3.934 15 C -0.082 4.082 16 C -0.057 4.057 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.032 4.032 21 Cl -0.076 7.076 22 C -0.109 4.109 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.035 0.965 26 H 0.021 0.979 27 H 0.026 0.974 28 H 0.262 0.738 29 H 0.354 0.646 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 6.325 -19.794 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.017 4.017 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.318 5.318 14 C -0.064 4.064 15 C -0.120 4.120 16 C -0.058 4.058 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.140 4.140 20 C -0.058 4.058 21 Cl -0.047 7.047 22 C -0.127 4.127 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.175 0.825 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.172 6.052 -19.799 20.945 hybrid contribution 2.010 0.770 0.315 2.175 sum -1.162 6.822 -19.484 20.676 Atomic orbital electron populations 1.21792 0.96738 1.01297 0.99451 1.21610 0.93346 0.95880 0.91381 0.95341 1.19274 0.95383 0.96192 0.90807 1.21133 0.92238 1.34609 1.08373 0.93100 1.24981 0.98215 0.95155 0.95668 1.69950 1.35615 1.35499 1.11920 0.86706 0.85906 0.78183 0.77496 1.20358 1.21240 1.20185 1.60574 1.34713 1.32075 1.04428 1.21875 0.99750 0.94122 0.90615 1.20664 1.02994 0.96767 0.91574 1.19959 0.92749 0.96709 0.96395 1.21225 0.98513 0.98664 0.94625 1.21099 0.97397 0.96227 0.97813 1.21007 0.92273 1.01017 0.99736 1.20926 0.88834 0.97839 0.98245 1.98369 1.37110 1.73829 1.95433 1.21046 0.99125 0.96029 0.96529 0.92635 0.93339 0.94561 0.96073 0.95572 0.92869 0.82484 0.91783 0.95779 0.90667 0.89775 0.85217 0.85206 0.85264 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.41 37.15 0.35 -2.06 16 2 C 0.09 1.80 2.59 -67.72 -0.18 1.63 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.21 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.53 -14.33 8.12 -34.44 -0.28 -14.61 16 6 H 0.05 1.35 7.49 -52.49 -0.39 0.95 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -12.78 6.31 -106.73 -0.67 -13.45 16 14 C 0.07 1.02 5.47 -3.82 -0.02 1.00 16 15 C -0.08 -1.05 5.61 -27.89 -0.16 -1.20 16 16 C -0.06 -0.67 5.13 -104.63 -0.54 -1.21 16 17 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 18 C -0.11 -0.98 10.05 -39.59 -0.40 -1.37 16 19 C -0.12 -1.19 9.83 -39.55 -0.39 -1.58 16 20 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 21 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.33 16 22 C -0.11 -1.30 9.49 -39.55 -0.38 -1.68 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 29 H 0.35 7.17 7.21 -39.29 -0.28 6.89 16 30 H 0.06 0.95 7.44 -51.93 -0.39 0.56 16 31 H 0.02 0.39 8.05 -51.93 -0.42 -0.02 16 32 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 36 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -28.87 325.87 -10.02 -38.88 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.63 Total: 2.53 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.84 Total: -21.19 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.06 Total: -39.09 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.87 -10.02 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702936622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.100 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds