Wall clock time and date at job start Mon Mar 30 2020 07:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.50698 * 109.47216 * 184.99588 * 4 2 1 6 6 H 1.07999 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47261 * 60.00176 * 9 7 5 11 11 H 1.48499 * 109.47111 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47160 * 300.00320 * 9 7 5 13 13 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 14 14 C 1.46905 * 110.99870 * 84.99904 * 13 2 1 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 2 16 16 C 1.50698 * 109.47393 * 180.02562 * 15 14 13 17 17 C 1.38262 * 119.99481 * 269.72362 * 16 15 14 18 18 C 1.38215 * 120.03081 * 179.76019 * 17 16 15 19 19 C 1.38240 * 120.01171 * 0.51147 * 18 17 16 20 20 C 1.38329 * 119.98427 * 359.74617 * 19 18 17 21 21 Cl 1.73597 * 120.01178 * 180.02562 * 20 19 18 22 22 C 1.38195 * 119.99449 * 89.99590 * 16 15 14 23 23 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 25 25 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 26 26 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 27 27 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 28 28 H 0.96998 * 119.99857 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00067 * 208.95080 * 13 2 1 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 32 32 H 1.09001 * 109.47393 * 299.99719 * 15 14 13 33 33 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 34 34 H 1.08003 * 119.98608 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.00149 * 180.25302 * 18 17 16 36 36 H 1.08004 * 120.00682 * 179.76060 * 19 18 17 37 37 H 1.07993 * 120.00800 * 359.96057 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1927 2.3582 8 7 3.5763 -1.8370 3.3000 9 14 6.0919 -1.0604 2.4372 10 1 6.4844 0.3706 2.4965 11 1 6.5870 -1.7605 3.6497 12 1 6.6845 -1.6865 1.2280 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 6 2.6600 0.4059 -4.7514 17 6 1.5669 0.5438 -5.5868 18 6 1.6240 1.4085 -6.6636 19 6 2.7779 2.1280 -6.9122 20 6 3.8737 1.9864 -6.0799 21 17 5.3229 2.8901 -6.3911 22 6 3.8141 1.1246 -4.9989 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 4.0607 -2.2437 4.0354 29 1 2.9173 -1.1204 -1.0288 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5903 -0.9270 -3.3692 33 1 1.9183 -1.3563 -3.8030 34 1 0.6668 -0.0217 -5.3958 35 1 0.7685 1.5189 -7.3134 36 1 2.8238 2.8007 -7.7559 37 1 4.6692 1.0140 -4.3486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702936622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:34 Heat of formation + Delta-G solvation = -24.055021 kcal Electronic energy + Delta-G solvation = -17325.836896 eV Core-core repulsion = 14512.966183 eV Total energy + Delta-G solvation = -2812.870714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42319 -38.38275 -37.45825 -35.31502 -34.17380 -31.78221 -31.56514 -29.29909 -28.24098 -25.20992 -23.74706 -23.59696 -21.90763 -21.05451 -18.51535 -17.88137 -16.98843 -16.62015 -16.55007 -16.15113 -15.93241 -14.99754 -14.79117 -14.54785 -14.30986 -14.11567 -13.67140 -13.48257 -13.19579 -13.04627 -12.69723 -12.64914 -12.57020 -12.41086 -12.29022 -12.22213 -12.10657 -11.78649 -11.68867 -11.23778 -10.99723 -10.57288 -9.85363 -9.61662 -9.20277 -8.19630 -6.30302 0.19703 0.30375 1.14519 1.39627 1.41123 1.48979 2.39832 2.65074 3.11719 3.38895 3.84553 3.94383 4.11946 4.20570 4.31093 4.32853 4.39347 4.48421 4.59960 4.67910 4.74647 4.76247 4.93940 5.00385 5.05979 5.19886 5.22302 5.27223 5.34635 5.39969 5.49538 5.55990 5.62074 5.84132 5.88082 6.20713 6.40258 6.64418 6.84839 7.38599 8.91825 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.004097 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.702686 B = 6832.682205 C = 8038.362047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.094 3.906 3 H 0.021 0.979 4 C 0.028 3.972 5 C -0.536 4.536 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 N -0.684 5.684 14 C 0.071 3.929 15 C -0.072 4.072 16 C -0.070 4.070 17 C -0.114 4.114 18 C -0.101 4.101 19 C -0.121 4.121 20 C -0.045 4.045 21 Cl -0.079 7.079 22 C -0.125 4.125 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.062 0.938 26 H -0.006 1.006 27 H -0.001 1.001 28 H 0.263 0.737 29 H 0.343 0.657 30 H 0.075 0.925 31 H 0.012 0.988 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 7.037 -21.894 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.016 4.016 3 H 0.039 0.961 4 C -0.010 4.010 5 C -0.574 4.574 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.190 1.190 13 N -0.316 5.316 14 C -0.059 4.059 15 C -0.109 4.109 16 C -0.071 4.071 17 C -0.132 4.132 18 C -0.119 4.119 19 C -0.140 4.140 20 C -0.072 4.072 21 Cl -0.050 7.050 22 C -0.144 4.144 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.012 0.988 27 H 0.018 0.982 28 H 0.072 0.928 29 H 0.162 0.838 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.165 0.835 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.448 6.776 -21.920 23.201 hybrid contribution 2.049 0.571 0.926 2.320 sum -1.400 7.347 -20.994 22.287 Atomic orbital electron populations 1.21702 0.94313 1.01547 1.00920 1.21433 0.95274 0.94639 0.90222 0.96136 1.19134 0.94776 0.94822 0.92243 1.21489 0.93330 1.34214 1.08383 0.92593 1.25863 1.03232 0.94776 0.95302 1.70083 1.37614 1.36608 1.12672 0.85611 0.79905 0.78392 0.77806 1.19695 1.20962 1.19011 1.60622 1.33913 1.32615 1.04471 1.21915 1.00230 0.93447 0.90268 1.20512 1.02592 0.96920 0.90920 1.19869 0.93480 0.97084 0.96648 1.21480 0.98447 0.98775 0.94452 1.21469 0.98011 0.94928 0.97511 1.21333 0.91860 1.00994 0.99766 1.21069 0.89390 0.98100 0.98614 1.98364 1.37435 1.73840 1.95411 1.21073 0.99253 0.96925 0.97124 0.92977 0.93035 0.91923 0.98764 0.98236 0.92787 0.83799 0.90668 0.96983 0.91399 0.88978 0.83526 0.82045 0.83296 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.41 71.98 0.68 -3.73 16 2 C 0.09 3.89 2.59 44.91 0.12 4.01 16 3 H 0.02 0.88 7.80 -2.39 -0.02 0.86 16 4 C 0.03 1.44 4.57 29.85 0.14 1.58 16 5 C -0.54 -29.71 8.12 25.60 0.21 -29.50 16 6 H 0.06 2.98 7.49 -2.91 -0.02 2.96 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 9 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 N -0.68 -25.33 6.31 -491.58 -3.10 -28.44 16 14 C 0.07 2.10 5.47 86.30 0.47 2.57 16 15 C -0.07 -1.75 5.61 29.85 0.17 -1.58 16 16 C -0.07 -1.54 5.13 -19.87 -0.10 -1.64 16 17 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 18 C -0.10 -1.50 10.05 22.26 0.22 -1.27 16 19 C -0.12 -2.05 9.83 22.29 0.22 -1.83 16 20 C -0.05 -0.96 6.32 22.32 0.14 -0.82 16 21 Cl -0.08 -1.66 28.96 -2.72 -0.08 -1.74 16 22 C -0.12 -2.91 9.49 22.29 0.21 -2.70 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.06 1.84 7.45 -2.39 -0.02 1.82 16 26 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.34 14.02 7.21 -89.69 -0.65 13.37 16 30 H 0.07 2.07 7.44 -2.39 -0.02 2.05 16 31 H 0.01 0.39 8.05 -2.39 -0.02 0.37 16 32 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 33 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 34 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -62.33 325.87 2.68 -59.65 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.40 Total: 16.31 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 3.15 Total: -35.85 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -2.82 Total: -84.30 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -62.33 2.68 -59.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702936622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.598 kcal (2) G-P(sol) polarization free energy of solvation -62.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds