Wall clock time and date at job start Mon Mar 30 2020 06:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48494 * 109.47251 * 265.63752 * 3 2 1 5 5 H 1.48500 * 109.47207 * 25.64488 * 3 2 1 6 6 H 1.48505 * 109.46904 * 145.64047 * 3 2 1 7 7 C 1.37879 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00309 * 353.00988 * 7 2 1 9 9 C 1.50693 * 119.99671 * 173.01341 * 7 2 1 10 10 H 1.08997 * 109.47663 * 5.06164 * 9 7 2 11 11 C 1.50700 * 109.47168 * 245.05705 * 9 7 2 12 12 C 1.38231 * 120.00246 * 286.10152 * 11 9 7 13 13 C 1.38234 * 120.00206 * 179.79081 * 12 11 9 14 14 C 1.38241 * 119.99840 * 0.43503 * 13 12 11 15 15 C 1.38232 * 119.99954 * 359.81982 * 14 13 12 16 16 C 1.38234 * 119.99871 * 359.97436 * 15 14 13 17 17 N 1.46904 * 109.47192 * 125.05886 * 9 7 2 18 18 C 1.47901 * 111.00010 * 295.00178 * 17 9 7 19 19 C 1.53998 * 107.22519 * 214.25156 * 18 17 9 20 20 H 1.09000 * 110.31056 * 120.13963 * 19 18 17 21 21 F 1.39895 * 110.30960 * 242.21013 * 19 18 17 22 22 C 1.54600 * 105.13789 * 1.12576 * 19 18 17 23 23 H 1.08997 * 110.72458 * 140.31970 * 22 19 18 24 24 F 1.39907 * 110.72195 * 263.59581 * 22 19 18 25 25 C 1.48805 * 111.18958 * 177.65939 * 17 9 7 26 26 H 0.97001 * 119.99721 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99974 * 359.97438 * 12 11 9 28 28 H 1.07995 * 120.00042 * 180.27687 * 13 12 11 29 29 H 1.07998 * 119.99725 * 179.83689 * 14 13 12 30 30 H 1.07997 * 120.00110 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.00147 * 180.02562 * 16 15 14 32 32 H 1.08995 * 109.92015 * 94.79849 * 18 17 9 33 33 H 1.08993 * 109.91799 * 333.69934 * 18 17 9 34 34 H 1.09004 * 110.52128 * 41.07552 * 25 17 9 35 35 H 1.09003 * 110.70394 * 278.02569 * 25 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5888 1.9932 -1.3960 5 1 1.4035 2.6775 0.6059 6 1 3.4976 1.4685 0.7902 7 6 2.0046 -1.1941 -0.0005 8 1 1.4707 -2.1260 0.1129 9 6 3.5031 -1.1988 -0.1593 10 1 3.8707 -0.1727 -0.1694 11 6 3.8689 -1.8762 -1.4548 12 6 3.7695 -3.2502 -1.5684 13 6 4.1009 -3.8712 -2.7581 14 6 4.5404 -3.1189 -3.8314 15 6 4.6448 -1.7454 -3.7162 16 6 4.3093 -1.1240 -2.5278 17 7 4.1121 -1.9260 0.9625 18 6 3.8742 -1.2227 2.2417 19 6 5.1175 -1.4456 3.1227 20 1 5.5756 -0.4904 3.3791 21 9 4.7707 -2.1442 4.2841 22 6 6.0803 -2.2895 2.2562 23 1 7.1098 -1.9564 2.3876 24 9 5.9561 -3.6496 2.5596 25 6 5.5908 -2.0024 0.8145 26 1 -0.4850 0.8401 0.0004 27 1 3.4301 -3.8384 -0.7285 28 1 4.0190 -4.9442 -2.8483 29 1 4.8018 -3.6043 -4.7601 30 1 4.9885 -1.1577 -4.5545 31 1 4.3905 -0.0508 -2.4378 32 1 2.9924 -1.6337 2.7330 33 1 3.7347 -0.1572 2.0592 34 1 5.9885 -1.0533 0.4551 35 1 5.8695 -2.8158 0.1445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714565177.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:02 Heat of formation + Delta-G solvation = -62.687426 kcal Electronic energy + Delta-G solvation = -20848.219597 eV Core-core repulsion = 17481.876976 eV Total energy + Delta-G solvation = -3366.342621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.92296 -46.76701 -39.01809 -37.32593 -33.42451 -31.72332 -30.25202 -29.28739 -28.19630 -26.61084 -23.09561 -21.99610 -21.45970 -20.66683 -19.67327 -17.33916 -16.96891 -16.43518 -16.10761 -15.31196 -14.93407 -14.71880 -14.43595 -14.27143 -14.12369 -13.41189 -13.21295 -13.10774 -12.81275 -12.69540 -12.42823 -12.09998 -11.98602 -11.47954 -11.37133 -11.08539 -10.75758 -10.60062 -10.40795 -10.22752 -10.14429 -9.94736 -9.60749 -8.79014 -8.27799 -7.93925 -7.62977 -6.29254 -4.28583 2.03304 2.08140 3.06551 3.11930 3.18707 4.17274 4.22839 4.30250 4.46188 4.63188 4.67386 4.83235 5.05653 5.15762 5.37182 5.47705 5.52685 5.56505 5.64942 5.86700 5.92442 6.09856 6.17054 6.20338 6.26021 6.37322 6.55525 6.67622 6.72753 7.02426 7.10455 7.24187 7.36793 7.65999 7.70533 7.75388 8.38849 8.84571 9.30994 10.83031 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.010172 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.999328 B = 2751.945338 C = 4201.401550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.867 3.133 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.492 4.492 8 H 0.086 0.914 9 C 0.205 3.795 10 H 0.021 0.979 11 C -0.034 4.034 12 C -0.094 4.094 13 C -0.127 4.127 14 C -0.146 4.146 15 C -0.124 4.124 16 C -0.133 4.133 17 N -0.496 5.496 18 C 0.027 3.973 19 C 0.054 3.946 20 H 0.097 0.903 21 F -0.198 7.198 22 C 0.067 3.933 23 H 0.095 0.905 24 F -0.191 7.191 25 C 0.003 3.997 26 H 0.268 0.732 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.310 -1.020 -0.362 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.104 0.896 9 C 0.099 3.901 10 H 0.038 0.962 11 C -0.035 4.035 12 C -0.112 4.112 13 C -0.145 4.145 14 C -0.164 4.164 15 C -0.143 4.143 16 C -0.152 4.152 17 N -0.222 5.222 18 C -0.101 4.101 19 C 0.016 3.984 20 H 0.115 0.885 21 F -0.179 7.179 22 C 0.030 3.970 23 H 0.113 0.887 24 F -0.171 7.171 25 C -0.126 4.126 26 H 0.078 0.922 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.850 -1.453 -0.323 11.943 hybrid contribution 0.574 1.777 -0.087 1.869 sum 12.424 0.324 -0.410 12.435 Atomic orbital electron populations 1.69875 1.06126 1.27274 1.48489 1.25076 0.94769 0.98600 0.94184 0.87065 0.80003 0.84418 0.79052 1.19775 1.20992 1.19316 1.20751 0.87527 0.95266 1.49496 0.89644 1.19027 0.96265 0.90273 0.84488 0.96157 1.20243 0.92950 0.93815 0.96481 1.21008 0.98439 0.94567 0.97194 1.21096 1.00508 0.99194 0.93744 1.20890 1.02997 0.94096 0.98402 1.20913 1.01469 0.94710 0.97161 1.20954 1.01339 0.99193 0.93726 1.65291 1.05113 1.49467 1.02300 1.23270 0.96603 0.99215 0.91018 1.23205 0.97552 0.94654 0.82949 0.88479 1.92823 1.93456 1.81180 1.50436 1.23000 0.99593 0.77955 0.96470 0.88682 1.92832 1.97369 1.32824 1.94095 1.23912 0.92248 1.01878 0.94527 0.92194 0.85614 0.87057 0.87312 0.87222 0.87395 0.88278 0.92115 0.92701 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.96 55.43 0.77 -24.70 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 19.84 26.49 -169.99 -4.50 15.33 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -5.68 5.62 56.52 0.32 -5.36 16 7 C -0.49 -12.90 8.33 -34.44 -0.29 -13.19 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.21 4.50 1.36 -70.02 -0.10 4.40 16 10 H 0.02 0.46 4.28 -51.93 -0.22 0.24 16 11 C -0.03 -0.69 3.93 -104.62 -0.41 -1.10 16 12 C -0.09 -1.82 8.65 -39.59 -0.34 -2.16 16 13 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 14 C -0.15 -2.30 10.05 -39.58 -0.40 -2.70 16 15 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 16 C -0.13 -2.52 9.67 -39.58 -0.38 -2.91 16 17 N -0.50 -9.85 4.61 -225.05 -1.04 -10.89 16 18 C 0.03 0.51 5.86 -2.75 -0.02 0.50 16 19 C 0.05 0.83 4.73 -25.37 -0.12 0.71 16 20 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 21 F -0.20 -3.44 16.60 2.25 0.04 -3.41 16 22 C 0.07 0.98 4.82 -24.87 -0.12 0.86 16 23 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 24 F -0.19 -3.31 16.71 2.25 0.04 -3.27 16 25 C 0.00 0.04 5.46 -1.75 -0.01 0.04 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.13 2.54 7.91 -52.48 -0.42 2.12 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.97 7.99 -52.49 -0.42 1.55 16 32 H 0.10 2.05 8.02 -51.93 -0.42 1.63 16 33 H 0.06 1.18 5.97 -51.93 -0.31 0.87 16 34 H 0.05 0.82 8.02 -51.93 -0.42 0.40 16 35 H 0.09 1.54 7.51 -51.93 -0.39 1.15 16 LS Contribution 293.14 15.07 4.42 4.42 Total: -1.00 -28.99 293.14 -7.69 -36.68 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.35 Total: 4.37 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -3.07 Total: -18.53 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.26 Total: -35.59 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.08 Total: -6.68 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.50 Total: 15.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.99 -7.69 -36.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714565177.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.006 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds