Wall clock time and date at job start Mon Mar 30 2020 06:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48494 * 109.47251 * 265.63752 * 3 2 1 5 5 H 1.48500 * 109.47207 * 25.64488 * 3 2 1 6 6 H 1.48505 * 109.46904 * 145.64047 * 3 2 1 7 7 C 1.37879 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00309 * 353.00988 * 7 2 1 9 9 C 1.50693 * 119.99671 * 173.01341 * 7 2 1 10 10 H 1.08997 * 109.47663 * 5.06164 * 9 7 2 11 11 C 1.50700 * 109.47168 * 245.05705 * 9 7 2 12 12 C 1.38231 * 120.00246 * 286.10152 * 11 9 7 13 13 C 1.38234 * 120.00206 * 179.79081 * 12 11 9 14 14 C 1.38241 * 119.99840 * 0.43503 * 13 12 11 15 15 C 1.38232 * 119.99954 * 359.81982 * 14 13 12 16 16 C 1.38234 * 119.99871 * 359.97436 * 15 14 13 17 17 N 1.46904 * 109.47192 * 125.05886 * 9 7 2 18 18 C 1.47901 * 111.00010 * 295.00178 * 17 9 7 19 19 C 1.53998 * 107.22519 * 214.25156 * 18 17 9 20 20 H 1.09000 * 110.31056 * 120.13963 * 19 18 17 21 21 F 1.39895 * 110.30960 * 242.21013 * 19 18 17 22 22 C 1.54600 * 105.13789 * 1.12576 * 19 18 17 23 23 H 1.08997 * 110.72458 * 140.31970 * 22 19 18 24 24 F 1.39907 * 110.72195 * 263.59581 * 22 19 18 25 25 C 1.48805 * 111.18958 * 177.65939 * 17 9 7 26 26 H 0.97001 * 119.99721 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99974 * 359.97438 * 12 11 9 28 28 H 1.07995 * 120.00042 * 180.27687 * 13 12 11 29 29 H 1.07998 * 119.99725 * 179.83689 * 14 13 12 30 30 H 1.07997 * 120.00110 * 179.97438 * 15 14 13 31 31 H 1.08001 * 120.00147 * 180.02562 * 16 15 14 32 32 H 1.08995 * 109.92015 * 94.79849 * 18 17 9 33 33 H 1.08993 * 109.91799 * 333.69934 * 18 17 9 34 34 H 1.09004 * 110.52128 * 41.07552 * 25 17 9 35 35 H 1.09003 * 110.70394 * 278.02569 * 25 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5888 1.9932 -1.3960 5 1 1.4035 2.6775 0.6059 6 1 3.4976 1.4685 0.7902 7 6 2.0046 -1.1941 -0.0005 8 1 1.4707 -2.1260 0.1129 9 6 3.5031 -1.1988 -0.1593 10 1 3.8707 -0.1727 -0.1694 11 6 3.8689 -1.8762 -1.4548 12 6 3.7695 -3.2502 -1.5684 13 6 4.1009 -3.8712 -2.7581 14 6 4.5404 -3.1189 -3.8314 15 6 4.6448 -1.7454 -3.7162 16 6 4.3093 -1.1240 -2.5278 17 7 4.1121 -1.9260 0.9625 18 6 3.8742 -1.2227 2.2417 19 6 5.1175 -1.4456 3.1227 20 1 5.5756 -0.4904 3.3791 21 9 4.7707 -2.1442 4.2841 22 6 6.0803 -2.2895 2.2562 23 1 7.1098 -1.9564 2.3876 24 9 5.9561 -3.6496 2.5596 25 6 5.5908 -2.0024 0.8145 26 1 -0.4850 0.8401 0.0004 27 1 3.4301 -3.8384 -0.7285 28 1 4.0190 -4.9442 -2.8483 29 1 4.8018 -3.6043 -4.7601 30 1 4.9885 -1.1577 -4.5545 31 1 4.3905 -0.0508 -2.4378 32 1 2.9924 -1.6337 2.7330 33 1 3.7347 -0.1572 2.0592 34 1 5.9885 -1.0533 0.4551 35 1 5.8695 -2.8158 0.1445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714565177.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:02 Heat of formation + Delta-G solvation = -80.625193 kcal Electronic energy + Delta-G solvation = -20848.997437 eV Core-core repulsion = 17481.876976 eV Total energy + Delta-G solvation = -3367.120460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.20819 -48.05950 -40.47812 -38.72977 -35.20117 -33.44132 -31.62707 -30.67025 -29.57586 -28.34151 -24.75782 -23.38811 -22.80735 -21.96984 -21.22519 -19.19060 -18.34686 -17.78342 -17.48563 -16.61469 -16.52801 -16.07025 -15.96122 -15.65783 -15.60473 -14.89234 -14.75284 -14.55187 -14.42633 -14.07099 -13.89392 -13.60031 -13.44067 -13.01907 -12.86703 -12.73550 -12.15138 -12.04901 -11.85990 -11.73889 -11.63886 -11.47754 -11.37180 -10.81427 -9.65855 -9.38633 -9.15933 -8.35519 -6.39840 0.64154 0.69162 1.24340 1.28099 1.36861 2.24814 2.81169 3.01329 3.15714 3.16991 3.26408 3.49722 3.60875 3.97897 4.13696 4.21686 4.23000 4.26959 4.32373 4.42929 4.52838 4.65898 4.78190 4.82775 4.89947 4.91904 5.09965 5.22683 5.32431 5.43395 5.70927 5.75403 5.88862 6.02484 6.08343 6.31189 6.51815 6.68330 7.24394 8.81477 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.010172 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.999328 B = 2751.945338 C = 4201.401550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.020 3.980 3 Si 0.930 3.070 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.491 4.491 8 H 0.028 0.972 9 C 0.216 3.784 10 H 0.023 0.977 11 C -0.060 4.060 12 C -0.114 4.114 13 C -0.128 4.128 14 C -0.136 4.136 15 C -0.120 4.120 16 C -0.148 4.148 17 N -0.520 5.520 18 C 0.022 3.978 19 C 0.057 3.943 20 H 0.144 0.856 21 F -0.211 7.211 22 C 0.069 3.931 23 H 0.150 0.850 24 F -0.210 7.210 25 C 0.006 3.994 26 H 0.268 0.732 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.999 -0.013 -1.736 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.179 4.179 3 Si 0.753 3.247 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.109 3.891 10 H 0.041 0.959 11 C -0.061 4.061 12 C -0.132 4.132 13 C -0.146 4.146 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.166 4.166 17 N -0.245 5.245 18 C -0.106 4.106 19 C 0.020 3.980 20 H 0.162 0.838 21 F -0.192 7.192 22 C 0.033 3.967 23 H 0.167 0.833 24 F -0.191 7.191 25 C -0.122 4.122 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.153 0.847 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.572 -0.472 -1.692 15.671 hybrid contribution -0.587 1.287 0.269 1.439 sum 14.985 0.815 -1.423 15.075 Atomic orbital electron populations 1.70048 1.08269 1.28211 1.51326 1.25922 0.95450 1.02638 0.93883 0.86044 0.79615 0.79045 0.79972 1.18591 1.21240 1.16199 1.20824 0.90277 0.93047 1.48847 0.95333 1.18766 0.93236 0.90937 0.86117 0.95918 1.20172 0.95230 0.94372 0.96300 1.20932 0.99935 0.94411 0.97936 1.21390 0.99564 1.00663 0.92983 1.21347 1.00876 0.93973 0.99189 1.21321 0.99965 0.95397 0.97074 1.21140 1.01788 0.99512 0.94181 1.64992 1.08170 1.49421 1.01907 1.23230 0.97574 0.98407 0.91406 1.23401 0.95879 0.96811 0.81891 0.83832 1.92797 1.93589 1.81747 1.51096 1.23313 1.02007 0.76731 0.94698 0.83263 1.92799 1.97595 1.34562 1.94111 1.23951 0.89402 1.02901 0.95961 0.92312 0.88085 0.84704 0.83451 0.83775 0.86893 0.91864 0.92530 0.90479 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 13.96 21.45 0.30 -57.14 16 2 C 0.02 1.12 5.47 84.65 0.46 1.58 16 3 Si 0.93 41.08 26.49 68.60 1.82 42.90 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.24 -9.26 5.62 99.48 0.56 -8.71 16 7 C -0.49 -27.31 8.33 25.60 0.21 -27.10 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.22 9.60 1.36 43.42 0.06 9.66 16 10 H 0.02 1.00 4.28 -2.39 -0.01 0.99 16 11 C -0.06 -2.44 3.93 -19.87 -0.08 -2.52 16 12 C -0.11 -4.47 8.65 22.27 0.19 -4.28 16 13 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 14 C -0.14 -3.77 10.05 22.27 0.22 -3.54 16 15 C -0.12 -3.50 10.05 22.27 0.22 -3.28 16 16 C -0.15 -5.28 9.67 22.27 0.22 -5.07 16 17 N -0.52 -20.86 4.61 -865.91 -3.99 -24.86 16 18 C 0.02 0.85 5.86 86.45 0.51 1.36 16 19 C 0.06 1.63 4.73 31.48 0.15 1.78 16 20 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 21 F -0.21 -7.12 16.60 44.97 0.75 -6.38 16 22 C 0.07 1.81 4.82 31.80 0.15 1.96 16 23 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 24 F -0.21 -6.98 16.71 44.97 0.75 -6.23 16 25 C 0.01 0.17 5.46 86.59 0.47 0.64 16 26 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.10 4.36 7.91 -2.91 -0.02 4.34 16 28 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.11 3.85 7.99 -2.91 -0.02 3.82 16 32 H 0.06 2.79 8.02 -2.39 -0.02 2.77 16 33 H 0.06 2.16 5.97 -2.39 -0.01 2.14 16 34 H 0.08 2.02 8.02 -2.38 -0.02 2.00 16 35 H 0.09 2.83 7.51 -2.39 -0.02 2.81 16 Total: -1.00 -68.77 293.14 3.58 -65.19 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.94 Total: 19.16 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 3.02 Total: -32.65 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -3.69 Total: -82.00 kcal Atomic # 9 Polarization: -14.10 SS G_CDS: 1.50 Total: -12.60 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.82 Total: 42.90 kcal Total: -68.77 3.58 -65.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714565177.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.436 kcal (2) G-P(sol) polarization free energy of solvation -68.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds