Wall clock time and date at job start Mon Mar 30 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 119.99610 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00161 * 3 2 1 5 5 H 1.48496 * 109.47310 * 30.00607 * 3 2 1 6 6 H 1.48504 * 109.46895 * 150.00050 * 3 2 1 7 7 C 1.39945 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99849 * 197.84310 * 7 2 1 9 9 C 1.41389 * 120.00054 * 17.84758 * 7 2 1 10 10 C 1.40719 * 120.24234 * 204.38400 * 9 7 2 11 11 C 1.37615 * 119.74338 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25247 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75353 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.47119 * 89.99861 * 13 12 11 15 15 C 1.47903 * 110.99993 * 169.99975 * 14 13 12 16 16 C 1.53990 * 107.06035 * 214.15841 * 15 14 13 17 17 H 1.09000 * 110.31198 * 120.13875 * 16 15 14 18 18 F 1.39901 * 110.30959 * 242.31202 * 16 15 14 19 19 C 1.54593 * 105.13912 * 1.22551 * 16 15 14 20 20 H 1.09005 * 110.87994 * 263.53160 * 19 16 15 21 21 F 1.39899 * 110.72366 * 140.31549 * 19 16 15 22 22 C 1.48533 * 110.99919 * 52.60708 * 14 13 12 23 23 C 1.38634 * 120.49793 * 0.24957 * 12 11 10 24 24 C 1.37621 * 120.25153 * 359.44913 * 23 12 11 25 25 H 0.96997 * 120.00199 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.12918 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.87449 * 179.97438 * 11 10 9 28 28 H 1.09008 * 109.46769 * 330.00204 * 13 12 11 29 29 H 1.08997 * 109.47415 * 209.99966 * 13 12 11 30 30 H 1.08998 * 109.91838 * 333.51764 * 15 14 13 31 31 H 1.09000 * 109.91636 * 94.80486 * 15 14 13 32 32 H 1.09005 * 110.66905 * 278.15513 * 22 14 13 33 33 H 1.08999 * 110.66744 * 41.11594 * 22 14 13 34 34 H 1.08008 * 119.87649 * 179.70240 * 23 12 11 35 35 H 1.07995 * 120.13288 * 180.27315 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0466 -1.4001 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2860 9 6 1.3522 -2.4068 -0.3764 10 6 1.8260 -3.6498 0.0824 11 6 1.1801 -4.8065 -0.2902 12 6 0.0670 -4.7503 -1.1146 13 6 -0.6314 -6.0239 -1.5161 14 7 -1.6773 -6.3394 -0.5340 15 6 -2.5390 -7.4419 -1.0131 16 6 -3.9616 -7.1613 -0.4947 17 1 -4.6559 -7.0632 -1.3292 18 9 -4.3757 -8.1843 0.3652 19 6 -3.8547 -5.8245 0.2743 20 1 -3.7297 -5.9998 1.3428 21 9 -4.9766 -5.0240 0.0338 22 6 -2.5814 -5.1791 -0.3280 23 6 -0.4052 -3.5317 -1.5771 24 6 0.2211 -2.3618 -1.2124 25 1 -0.4850 0.8400 0.0004 26 1 2.6933 -3.6960 0.7244 27 1 1.5423 -5.7617 0.0603 28 1 0.0916 -6.8390 -1.5515 29 1 -1.0833 -5.8960 -2.4997 30 1 -2.5389 -7.4666 -2.1028 31 1 -2.1803 -8.3922 -0.6175 32 1 -2.1421 -4.4686 0.3723 33 1 -2.8057 -4.6929 -1.2774 34 1 -1.2705 -3.4999 -2.2228 35 1 -0.1510 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714566558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:10 Heat of formation + Delta-G solvation = -80.257458 kcal Electronic energy + Delta-G solvation = -19936.606251 eV Core-core repulsion = 16569.501736 eV Total energy + Delta-G solvation = -3367.104514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.08190 -47.39350 -38.75877 -37.12033 -33.92441 -31.75442 -29.58696 -29.17561 -28.51037 -26.25236 -23.69738 -21.68870 -21.23229 -20.81745 -19.83932 -17.37875 -17.34750 -16.73163 -15.47395 -15.34412 -15.28586 -14.98292 -14.59172 -14.23921 -13.88270 -13.85066 -13.43376 -13.01957 -12.93000 -12.56187 -12.14644 -11.96621 -11.67165 -11.53850 -11.27021 -11.11567 -10.98960 -10.84857 -10.52695 -10.46842 -10.35593 -9.63173 -9.42893 -9.19587 -8.33883 -7.51228 -7.36216 -6.82006 -4.40903 2.66378 3.02004 3.04718 3.07542 3.12125 3.85932 3.89082 4.06942 4.21088 4.28867 4.58875 4.66813 4.90758 5.08775 5.36774 5.48159 5.58206 5.64675 5.69747 5.87984 5.99009 6.11310 6.22769 6.28128 6.36473 6.85669 6.95672 7.02278 7.11284 7.24587 7.31823 7.55674 7.81251 7.99995 8.05796 8.24633 8.58223 8.84098 8.91683 10.12281 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030441 B = 0.004518 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.577002 B = 6195.560915 C = 6817.253102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.114 3.886 10 C -0.229 4.229 11 C -0.066 4.066 12 C -0.223 4.223 13 C 0.113 3.887 14 N -0.505 5.505 15 C 0.009 3.991 16 C 0.058 3.942 17 H 0.101 0.899 18 F -0.201 7.201 19 C 0.059 3.941 20 H 0.112 0.888 21 F -0.201 7.201 22 C 0.026 3.974 23 C -0.093 4.093 24 C -0.166 4.166 25 H 0.281 0.719 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 -8.510 -2.447 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.249 4.249 11 C -0.085 4.085 12 C -0.224 4.224 13 C -0.013 4.013 14 N -0.230 5.230 15 C -0.119 4.119 16 C 0.021 3.979 17 H 0.119 0.881 18 F -0.182 7.182 19 C 0.022 3.978 20 H 0.130 0.870 21 F -0.182 7.182 22 C -0.102 4.102 23 C -0.112 4.112 24 C -0.186 4.186 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.547 -8.509 -1.946 10.343 hybrid contribution -0.206 1.009 -0.680 1.234 sum -5.753 -7.500 -2.627 9.810 Atomic orbital electron populations 1.69818 1.07608 1.29321 1.34792 1.25919 0.94719 1.01360 0.92186 0.86314 0.80539 0.80556 0.79353 1.19250 1.20279 1.18574 1.19639 0.98200 0.91320 1.39914 0.90380 1.17639 0.90956 0.92046 0.88225 1.20976 1.03966 0.92874 1.07078 1.20338 0.95058 0.96454 0.96666 1.18798 1.01492 0.92241 1.09906 1.20961 0.92478 0.96879 0.91024 1.65021 1.09888 1.04213 1.43829 1.23514 0.90503 0.98468 0.99436 1.23052 0.97761 0.85131 0.91943 0.88135 1.92842 1.91751 1.61237 1.72381 1.23195 0.83607 0.88649 1.02345 0.87044 1.92827 1.53976 1.75346 1.96069 1.23681 0.90168 0.94579 1.01806 1.20523 0.98211 0.92827 0.99626 1.21280 0.99494 0.96637 1.01164 0.90796 0.89030 0.89338 0.90958 0.95199 0.92039 0.88630 0.87317 0.91969 0.89970 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.01 10.95 55.55 0.61 -19.41 16 2 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.33 29.59 -169.99 -5.03 13.29 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.00 9.05 -37.74 -0.34 -12.34 16 8 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 9 C 0.11 2.96 5.57 -106.82 -0.60 2.36 16 10 C -0.23 -5.49 9.80 -38.87 -0.38 -5.87 16 11 C -0.07 -1.43 9.67 -39.66 -0.38 -1.81 16 12 C -0.22 -4.54 4.61 -104.33 -0.48 -5.02 16 13 C 0.11 1.85 5.18 -4.98 -0.03 1.83 16 14 N -0.50 -7.79 5.39 -231.89 -1.25 -9.04 16 15 C 0.01 0.11 6.55 -2.76 -0.02 0.10 16 16 C 0.06 0.71 4.59 -25.38 -0.12 0.59 16 17 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 18 F -0.20 -2.68 17.09 2.25 0.04 -2.64 16 19 C 0.06 0.82 4.66 -24.87 -0.12 0.70 16 20 H 0.11 1.49 8.13 -51.93 -0.42 1.07 16 21 F -0.20 -3.02 17.19 2.25 0.04 -2.99 16 22 C 0.03 0.41 4.78 -1.90 -0.01 0.40 16 23 C -0.09 -2.04 8.31 -39.66 -0.33 -2.37 16 24 C -0.17 -4.16 8.70 -38.87 -0.34 -4.50 16 25 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 26 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 27 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.07 1.11 8.08 -51.92 -0.42 0.69 16 29 H 0.03 0.46 7.75 -51.93 -0.40 0.06 16 30 H 0.06 0.67 7.57 -51.93 -0.39 0.27 16 31 H 0.10 1.12 8.02 -51.93 -0.42 0.70 16 32 H 0.11 2.00 7.74 -51.93 -0.40 1.59 16 33 H 0.06 1.00 7.07 -51.93 -0.37 0.63 16 34 H 0.08 1.65 7.39 -52.48 -0.39 1.26 16 35 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 LS Contribution 296.49 15.07 4.47 4.47 Total: -1.00 -26.33 296.49 -8.70 -35.03 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.35 Total: 5.43 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -3.22 Total: -24.15 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: -0.64 Total: -28.44 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.08 Total: -5.63 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.33 -8.70 -35.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714566558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.226 kcal (2) G-P(sol) polarization free energy of solvation -26.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds