Wall clock time and date at job start Mon Mar 30 2020 06:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 119.99610 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00161 * 3 2 1 5 5 H 1.48496 * 109.47310 * 30.00607 * 3 2 1 6 6 H 1.48504 * 109.46895 * 150.00050 * 3 2 1 7 7 C 1.39945 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99849 * 197.84310 * 7 2 1 9 9 C 1.41389 * 120.00054 * 17.84758 * 7 2 1 10 10 C 1.40719 * 120.24234 * 204.38400 * 9 7 2 11 11 C 1.37615 * 119.74338 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25247 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75353 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.47119 * 89.99861 * 13 12 11 15 15 C 1.47903 * 110.99993 * 169.99975 * 14 13 12 16 16 C 1.53990 * 107.06035 * 214.15841 * 15 14 13 17 17 H 1.09000 * 110.31198 * 120.13875 * 16 15 14 18 18 F 1.39901 * 110.30959 * 242.31202 * 16 15 14 19 19 C 1.54593 * 105.13912 * 1.22551 * 16 15 14 20 20 H 1.09005 * 110.87994 * 263.53160 * 19 16 15 21 21 F 1.39899 * 110.72366 * 140.31549 * 19 16 15 22 22 C 1.48533 * 110.99919 * 52.60708 * 14 13 12 23 23 C 1.38634 * 120.49793 * 0.24957 * 12 11 10 24 24 C 1.37621 * 120.25153 * 359.44913 * 23 12 11 25 25 H 0.96997 * 120.00199 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.12918 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.87449 * 179.97438 * 11 10 9 28 28 H 1.09008 * 109.46769 * 330.00204 * 13 12 11 29 29 H 1.08997 * 109.47415 * 209.99966 * 13 12 11 30 30 H 1.08998 * 109.91838 * 333.51764 * 15 14 13 31 31 H 1.09000 * 109.91636 * 94.80486 * 15 14 13 32 32 H 1.09005 * 110.66905 * 278.15513 * 22 14 13 33 33 H 1.08999 * 110.66744 * 41.11594 * 22 14 13 34 34 H 1.08008 * 119.87649 * 179.70240 * 23 12 11 35 35 H 1.07995 * 120.13288 * 180.27315 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0466 -1.4001 5 1 1.4396 2.6526 0.7001 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2860 9 6 1.3522 -2.4068 -0.3764 10 6 1.8260 -3.6498 0.0824 11 6 1.1801 -4.8065 -0.2902 12 6 0.0670 -4.7503 -1.1146 13 6 -0.6314 -6.0239 -1.5161 14 7 -1.6773 -6.3394 -0.5340 15 6 -2.5390 -7.4419 -1.0131 16 6 -3.9616 -7.1613 -0.4947 17 1 -4.6559 -7.0632 -1.3292 18 9 -4.3757 -8.1843 0.3652 19 6 -3.8547 -5.8245 0.2743 20 1 -3.7297 -5.9998 1.3428 21 9 -4.9766 -5.0240 0.0338 22 6 -2.5814 -5.1791 -0.3280 23 6 -0.4052 -3.5317 -1.5771 24 6 0.2211 -2.3618 -1.2124 25 1 -0.4850 0.8400 0.0004 26 1 2.6933 -3.6960 0.7244 27 1 1.5423 -5.7617 0.0603 28 1 0.0916 -6.8390 -1.5515 29 1 -1.0833 -5.8960 -2.4997 30 1 -2.5389 -7.4666 -2.1028 31 1 -2.1803 -8.3922 -0.6175 32 1 -2.1421 -4.4686 0.3723 33 1 -2.8057 -4.6929 -1.2774 34 1 -1.2705 -3.4999 -2.2228 35 1 -0.1510 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714566558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:09 Heat of formation + Delta-G solvation = -94.286047 kcal Electronic energy + Delta-G solvation = -19937.214576 eV Core-core repulsion = 16569.501736 eV Total energy + Delta-G solvation = -3367.712840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15370 -48.47690 -40.16849 -38.69232 -35.69123 -33.23878 -31.28190 -30.81564 -29.65545 -27.84557 -25.23164 -23.19836 -22.46150 -22.27169 -21.46637 -19.21671 -18.45561 -17.85376 -17.18878 -16.51891 -16.46704 -16.19686 -15.91564 -15.75623 -15.46216 -15.05819 -14.93840 -14.40512 -14.21678 -14.03511 -13.81039 -13.49321 -13.19525 -12.99575 -12.77774 -12.64063 -12.39108 -12.15093 -12.02665 -11.93755 -11.55023 -11.37228 -11.22246 -11.01718 -9.56473 -9.32666 -9.16416 -8.64369 -6.33700 0.92934 1.17047 1.37475 1.50137 1.50332 2.20089 2.60342 2.83687 3.01257 3.14979 3.23490 3.66580 3.77019 3.90367 4.05812 4.21278 4.24404 4.31955 4.50576 4.58359 4.64069 4.72359 4.81967 4.88596 4.98198 5.05630 5.16359 5.37433 5.47830 5.68882 5.74205 5.88747 6.04302 6.11493 6.25910 6.40830 6.71152 6.94950 7.04605 8.32205 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030441 B = 0.004518 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.577002 B = 6195.560915 C = 6817.253102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.246 4.246 11 C -0.071 4.071 12 C -0.205 4.205 13 C 0.116 3.884 14 N -0.516 5.516 15 C 0.013 3.987 16 C 0.066 3.934 17 H 0.125 0.875 18 F -0.207 7.207 19 C 0.060 3.940 20 H 0.113 0.887 21 F -0.209 7.209 22 C 0.028 3.972 23 C -0.092 4.092 24 C -0.191 4.191 25 H 0.287 0.713 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 -10.205 -3.282 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.266 4.266 11 C -0.089 4.089 12 C -0.206 4.206 13 C -0.010 4.010 14 N -0.241 5.241 15 C -0.115 4.115 16 C 0.029 3.971 17 H 0.143 0.857 18 F -0.187 7.187 19 C 0.023 3.977 20 H 0.131 0.869 21 F -0.190 7.190 22 C -0.101 4.101 23 C -0.111 4.111 24 C -0.211 4.211 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.178 -10.228 -2.780 12.268 hybrid contribution -0.084 1.354 -0.426 1.422 sum -6.262 -8.873 -3.206 11.323 Atomic orbital electron populations 1.69873 1.08963 1.30473 1.35757 1.26718 0.95455 1.04410 0.91231 0.85235 0.79103 0.76058 0.79519 1.18657 1.19284 1.18278 1.19858 0.98337 0.92730 1.42303 0.90888 1.17965 0.91926 0.93014 0.89241 1.21174 1.04528 0.93315 1.07563 1.20669 0.95097 0.96740 0.96408 1.19250 1.00419 0.93634 1.07321 1.20951 0.93115 0.95048 0.91882 1.64906 1.10438 1.04686 1.44046 1.23584 0.89617 0.97316 1.00962 1.23064 0.98505 0.83585 0.91948 0.85740 1.92840 1.91832 1.61307 1.72749 1.23184 0.82443 0.89385 1.02727 0.86936 1.92815 1.54233 1.75787 1.96115 1.23504 0.91109 0.94499 1.00941 1.20743 0.98306 0.92550 0.99461 1.21245 1.00350 0.97090 1.02388 0.90205 0.88890 0.86635 0.89012 0.93442 0.89578 0.87507 0.90738 0.92167 0.88044 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.39 10.95 21.83 0.24 -43.15 16 2 C 0.04 1.86 5.14 85.26 0.44 2.30 16 3 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.37 9.05 23.46 0.21 -27.16 16 8 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 9 C 0.08 4.37 5.57 -21.29 -0.12 4.25 16 10 C -0.25 -12.03 9.80 22.73 0.22 -11.81 16 11 C -0.07 -2.97 9.67 22.22 0.21 -2.76 16 12 C -0.20 -8.03 4.61 -19.67 -0.09 -8.13 16 13 C 0.12 3.41 5.18 85.56 0.44 3.85 16 14 N -0.52 -14.34 5.39 -887.56 -4.78 -19.13 16 15 C 0.01 0.26 6.55 86.44 0.57 0.83 16 16 C 0.07 1.38 4.59 31.47 0.14 1.52 16 17 H 0.12 2.08 8.12 -2.39 -0.02 2.06 16 18 F -0.21 -4.85 17.09 44.97 0.77 -4.08 16 19 C 0.06 1.55 4.66 31.80 0.15 1.69 16 20 H 0.11 2.87 8.13 -2.38 -0.02 2.85 16 21 F -0.21 -5.96 17.19 44.97 0.77 -5.19 16 22 C 0.03 0.85 4.78 86.65 0.41 1.26 16 23 C -0.09 -4.01 8.31 22.22 0.18 -3.83 16 24 C -0.19 -9.91 8.70 22.73 0.20 -9.71 16 25 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 26 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 27 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.09 2.40 8.08 -2.38 -0.02 2.38 16 29 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 30 H 0.09 1.40 7.57 -2.39 -0.02 1.38 16 31 H 0.11 2.01 8.02 -2.39 -0.02 1.99 16 32 H 0.07 2.76 7.74 -2.38 -0.02 2.74 16 33 H 0.06 1.83 7.07 -2.39 -0.02 1.81 16 34 H 0.10 3.96 7.39 -2.91 -0.02 3.94 16 35 H 0.10 5.35 6.16 -2.91 -0.02 5.33 16 Total: -1.00 -58.61 296.49 3.10 -55.51 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.09 Total: 23.24 kcal Atomic # 6 Polarization: -50.66 SS G_CDS: 2.98 Total: -47.68 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -4.54 Total: -62.27 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 1.54 Total: -9.27 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -58.61 3.10 -55.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714566558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.772 kcal (2) G-P(sol) polarization free energy of solvation -58.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds