Wall clock time and date at job start Mon Mar 30 2020 07:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30004 * 127.34447 * 2 1 4 4 O 1.20645 * 112.32903 * 180.02562 * 3 2 1 5 5 C 1.33474 * 113.17302 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.83509 * 179.73431 * 5 4 3 7 7 C 1.53001 * 109.47118 * 300.03050 * 6 5 4 8 8 C 1.52998 * 109.46835 * 60.02822 * 6 5 4 9 9 C 1.37435 * 106.32830 * 0.02562 * 5 4 3 10 10 C 1.47255 * 128.57341 * 179.97438 * 9 5 4 11 11 O 1.21524 * 120.00103 * 89.99783 * 10 9 5 12 12 O 1.34763 * 119.99891 * 269.99645 * 10 9 5 13 13 C 1.45198 * 116.99726 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47801 * 30.00240 * 13 12 10 15 15 C 1.52999 * 109.47029 * 269.99879 * 13 12 10 16 16 C 1.50704 * 109.47180 * 150.00257 * 13 12 10 17 17 H 1.08004 * 119.99648 * 359.97438 * 16 13 12 18 18 C 1.37871 * 120.00131 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99862 * 359.97438 * 18 16 13 20 20 Si 1.86806 * 119.99928 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47028 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46987 * 120.00162 * 20 18 16 23 23 H 1.48501 * 109.46943 * 239.99721 * 20 18 16 24 24 H 1.09002 * 109.47143 * 89.97330 * 1 2 3 25 25 H 1.08991 * 109.47471 * 209.97653 * 1 2 3 26 26 H 1.09003 * 109.46904 * 329.98278 * 1 2 3 27 27 H 1.08998 * 109.46836 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.47456 * 60.00148 * 7 6 5 29 29 H 1.09006 * 109.47107 * 180.02562 * 7 6 5 30 30 H 1.08996 * 109.47113 * 299.99597 * 7 6 5 31 31 H 1.08998 * 109.47405 * 299.99648 * 8 6 5 32 32 H 1.09002 * 109.47126 * 59.99885 * 8 6 5 33 33 H 1.09006 * 109.46717 * 179.97438 * 8 6 5 34 34 H 1.09000 * 109.47148 * 180.02562 * 15 13 12 35 35 H 1.09005 * 109.47336 * 300.00141 * 15 13 12 36 36 H 1.09004 * 109.47180 * 60.00500 * 15 13 12 37 37 H 0.97006 * 119.99567 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0335 0.0000 4 8 3.4608 0.7210 -0.0005 5 6 3.6502 -0.6003 -0.0004 6 6 4.9724 -1.3235 -0.0065 7 6 5.7599 -0.9359 -1.2597 8 6 5.7719 -0.9349 1.2388 9 6 2.3995 -1.1699 -0.0003 10 6 2.0410 -2.5982 -0.0007 11 8 1.8934 -3.1879 1.0516 12 8 1.8767 -3.2513 -1.1679 13 6 1.5232 -4.6576 -1.0922 14 1 0.9478 -4.8394 -0.1845 15 6 2.7981 -5.5031 -1.0659 16 6 0.6962 -5.0331 -2.2948 17 1 0.4596 -4.2891 -3.0411 18 6 0.2417 -6.3264 -2.4423 19 7 0.5303 -7.2324 -1.5338 20 14 -0.7840 -6.7916 -3.9326 21 1 -0.9661 -5.5999 -4.7997 22 1 -0.0899 -7.8585 -4.6977 23 1 -2.1107 -7.2866 -3.4854 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3634 -0.8901 0.5134 26 1 -0.3633 0.8899 0.5141 27 1 4.7979 -2.3994 -0.0052 28 1 5.9344 0.1401 -1.2609 29 1 6.7161 -1.4593 -1.2643 30 1 5.1904 -1.2127 -2.1468 31 1 5.9463 0.1410 1.2375 32 1 5.2108 -1.2110 2.1316 33 1 6.7280 -1.4584 1.2346 34 1 2.5327 -6.5588 -1.0095 35 1 3.3735 -5.3214 -1.9737 36 1 3.3963 -5.2316 -0.1960 37 1 0.2108 -8.1424 -1.6378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709273.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:05 Heat of formation + Delta-G solvation = -47.126267 kcal Electronic energy + Delta-G solvation = -20780.639628 eV Core-core repulsion = 17526.059305 eV Total energy + Delta-G solvation = -3254.580323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.80521 -39.45425 -36.19707 -35.76133 -34.47104 -33.30425 -31.00370 -29.60442 -28.71335 -27.32371 -25.42893 -24.97371 -22.94193 -21.68204 -20.09053 -19.21202 -17.75720 -17.55737 -16.64748 -16.38572 -15.71122 -15.40750 -14.61831 -14.55473 -14.00928 -13.46582 -13.29728 -13.21799 -12.99682 -12.81370 -12.35557 -12.32816 -11.98571 -11.59167 -11.46147 -11.41744 -11.26672 -11.13914 -10.93385 -10.85168 -10.42980 -10.36107 -10.03246 -9.81234 -9.65452 -9.34033 -8.97040 -8.55705 -6.24271 -4.31419 1.37233 1.98325 2.56818 2.85739 3.20383 3.27485 3.32352 3.60735 4.16448 4.24075 4.33720 4.74299 4.86111 4.89164 5.09153 5.18713 5.40498 5.47368 5.48119 5.55249 5.64961 5.68933 5.71567 5.77678 5.87574 6.06564 6.09981 6.11661 6.53798 6.79727 6.80883 7.01539 7.50596 7.63187 7.82641 8.05230 8.27071 8.49025 8.79559 9.34308 10.83255 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.005430 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.496552 B = 5154.972456 C = 5723.216545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.061 3.939 3 N -0.360 5.360 4 O 0.098 5.902 5 C 0.027 3.973 6 C -0.018 4.018 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.218 4.218 10 C 0.538 3.462 11 O -0.501 6.501 12 O -0.343 6.343 13 C 0.213 3.787 14 H 0.049 0.951 15 C -0.156 4.156 16 C -0.521 4.521 17 H 0.070 0.930 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.912 3.088 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.038 0.962 36 H 0.016 0.984 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.562 11.799 2.270 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 N -0.067 5.067 4 O 0.037 5.963 5 C -0.036 4.036 6 C -0.037 4.037 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.223 4.223 10 C 0.379 3.621 11 O -0.391 6.391 12 O -0.259 6.259 13 C 0.161 3.839 14 H 0.066 0.934 15 C -0.213 4.213 16 C -0.559 4.559 17 H 0.088 0.912 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.739 3.261 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.289 12.686 2.590 14.858 hybrid contribution -0.710 -1.285 -0.621 1.594 sum 6.579 11.401 1.969 13.310 Atomic orbital electron populations 1.20261 0.84967 1.04194 1.04232 1.24716 0.98667 0.86237 1.00438 1.73564 0.89128 1.23219 1.20833 1.84459 1.21396 1.22341 1.68119 1.24561 0.96714 0.83587 0.98753 1.19938 0.86888 0.98969 0.97910 1.21880 1.00160 1.02281 0.96249 1.21882 1.00054 1.02356 0.96272 1.21274 0.92942 0.93582 1.14528 1.19524 0.74065 0.84947 0.83590 1.90828 1.46721 1.68257 1.33264 1.86661 1.77841 1.30228 1.31142 1.20763 0.93809 0.69814 0.99485 0.93372 1.22181 0.96889 1.04571 0.97691 1.21043 1.32436 0.95770 1.06644 0.91179 1.24882 0.96164 0.95704 0.97143 1.69905 1.45132 1.03400 1.34198 0.86212 0.79581 0.78597 0.81735 1.19443 1.20651 1.20677 0.89204 0.89531 0.89999 0.87737 0.91708 0.90967 0.91533 0.91659 0.91884 0.90966 0.88018 0.94262 0.96478 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.49 36.00 0.38 -0.69 16 2 C 0.06 1.01 7.59 -79.75 -0.61 0.40 16 3 N -0.36 -5.75 12.01 34.79 0.42 -5.34 16 4 O 0.10 1.46 11.06 18.70 0.21 1.66 16 5 C 0.03 0.41 6.06 -34.60 -0.21 0.20 16 6 C -0.02 -0.22 3.33 -91.77 -0.31 -0.52 16 7 C -0.15 -1.50 9.18 37.16 0.34 -1.16 16 8 C -0.15 -1.46 9.17 37.16 0.34 -1.12 16 9 C -0.22 -3.95 6.37 -102.91 -0.66 -4.61 16 10 C 0.54 11.67 7.42 34.40 0.26 11.93 16 11 O -0.50 -12.03 16.37 -19.28 -0.32 -12.34 16 12 O -0.34 -8.22 9.87 -40.66 -0.40 -8.62 16 13 C 0.21 5.64 2.56 -27.88 -0.07 5.57 16 14 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 15 C -0.16 -3.83 9.33 37.16 0.35 -3.48 16 16 C -0.52 -14.39 8.90 -34.44 -0.31 -14.69 16 17 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 20 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.43 7.71 -51.93 -0.40 1.03 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 323.80 15.07 4.88 4.88 Total: -1.00 -30.52 323.80 -5.48 -36.00 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.28 Total: -1.25 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.59 Total: -6.57 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 1.05 Total: -29.47 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.51 Total: -19.30 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.52 -5.48 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709273.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.131 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds