Wall clock time and date at job start Mon Mar 30 2020 07:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 C 1.50698 * 109.47049 * 120.00595 * 2 1 3 5 5 N 1.29128 * 124.77907 * 299.96914 * 4 2 1 6 6 C 1.31389 * 117.32766 * 180.02562 * 5 4 2 7 7 C 1.35471 * 114.13721 * 359.97438 * 6 5 4 8 8 C 1.46866 * 126.11943 * 179.97438 * 7 6 5 9 9 N 1.29933 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.40109 * 119.99828 * 180.02562 * 9 8 7 11 11 C 1.46498 * 119.99760 * 180.27595 * 10 9 8 12 12 H 1.08998 * 109.47386 * 329.72195 * 11 10 9 13 13 C 1.52999 * 109.47214 * 89.72111 * 11 10 9 14 14 C 1.50697 * 109.46790 * 209.72098 * 11 10 9 15 15 H 1.08003 * 120.00582 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99874 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00084 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99742 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46994 * 60.00871 * 18 16 14 20 20 H 1.48504 * 109.46752 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47640 * 300.00344 * 18 16 14 22 22 S 1.70947 * 124.78320 * 120.24390 * 4 2 1 23 23 H 1.08994 * 109.47575 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47185 * 299.99685 * 1 2 3 25 25 H 1.09003 * 109.47367 * 59.99545 * 1 2 3 26 26 H 1.09008 * 109.46729 * 240.00039 * 2 1 3 27 27 H 1.09004 * 109.47245 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47056 * 300.00014 * 3 2 1 29 29 H 1.08999 * 109.47095 * 60.00593 * 3 2 1 30 30 H 1.08002 * 122.93007 * 180.02562 * 6 5 4 31 31 H 1.08002 * 119.99420 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99794 * 359.97438 * 10 9 8 33 33 H 1.08999 * 109.47020 * 60.00304 * 13 11 10 34 34 H 1.09003 * 109.47035 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.47195 * 299.99379 * 13 11 10 36 36 H 0.96999 * 120.00094 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7783 -0.3505 2.4442 6 6 2.2932 -1.0781 3.4094 7 6 3.0339 -2.1269 2.9777 8 6 3.7266 -3.1052 3.8263 9 7 3.6581 -3.0068 5.1201 10 7 4.3193 -3.9398 5.9296 11 6 4.2372 -3.8323 7.3884 12 1 4.1265 -2.7851 7.6699 13 6 3.0295 -4.6258 7.8910 14 6 5.4952 -4.3879 8.0046 15 1 6.2778 -4.7814 7.3728 16 6 5.6475 -4.3930 9.3750 17 7 4.6947 -3.9135 10.1443 18 14 7.2065 -5.0824 10.1388 19 1 8.3791 -4.3130 9.6505 20 1 7.1233 -4.9734 11.6175 21 1 7.3564 -6.5093 9.7558 22 16 3.0241 -2.1028 1.2159 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.1387 -0.8595 4.4558 31 1 4.2928 -3.9065 3.3749 32 1 4.8279 -4.6594 5.5242 33 1 3.1402 -5.6730 7.6096 34 1 2.9687 -4.5462 8.9764 35 1 2.1196 -4.2239 7.4454 36 1 4.8017 -3.9174 11.1083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771884985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:56 Heat of formation + Delta-G solvation = 67.416867 kcal Electronic energy + Delta-G solvation = -16980.824134 eV Core-core repulsion = 14206.256396 eV Total energy + Delta-G solvation = -2774.567737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.62201 -36.69125 -35.49559 -34.08717 -31.73553 -29.57676 -27.33209 -27.01266 -25.51979 -25.16694 -22.68250 -21.21602 -20.36096 -18.47225 -18.06739 -16.82905 -15.86991 -15.26707 -14.94645 -14.64168 -14.60481 -14.18377 -13.69112 -13.17804 -13.03723 -12.62751 -12.52055 -12.27941 -11.75588 -11.58717 -11.43728 -11.36967 -11.15131 -11.07789 -10.94658 -10.71336 -10.32883 -10.27738 -9.84277 -9.38204 -9.28901 -9.08338 -8.76474 -8.54078 -6.91237 -6.19465 -4.28515 0.63354 1.36501 1.84231 2.65194 3.22191 3.27194 3.28335 3.39462 3.71211 4.13701 4.31840 4.70728 4.91456 4.94419 5.12825 5.14450 5.40449 5.46293 5.62707 5.65784 5.67446 5.77167 6.03104 6.05681 6.09312 6.45073 6.54874 6.80919 6.92518 7.06489 7.49409 7.68622 7.76556 7.92156 8.04453 8.19789 8.77315 9.14629 9.38398 10.86452 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.047008 B = 0.003089 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.502369 B = 9063.377287 C = 9189.166539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.012 4.012 3 C -0.140 4.140 4 C 0.029 3.971 5 N -0.459 5.459 6 C 0.041 3.959 7 C -0.134 4.134 8 C 0.009 3.991 9 N -0.178 5.178 10 N -0.612 5.612 11 C 0.296 3.704 12 H 0.044 0.956 13 C -0.151 4.151 14 C -0.534 4.534 15 H 0.060 0.940 16 C 0.068 3.932 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 S 0.120 5.880 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.181 0.819 31 H 0.107 0.893 32 H 0.371 0.629 33 H 0.027 0.973 34 H 0.092 0.908 35 H 0.013 0.987 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 5.124 -19.316 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.198 4.198 4 C -0.249 4.249 5 N -0.172 5.172 6 C -0.114 4.114 7 C -0.257 4.257 8 C -0.199 4.199 9 N 0.006 4.994 10 N -0.349 5.349 11 C 0.194 3.806 12 H 0.062 0.938 13 C -0.210 4.210 14 C -0.573 4.573 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.201 1.201 22 S 0.375 5.625 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.198 0.802 31 H 0.125 0.875 32 H 0.207 0.793 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.033 0.967 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.494 5.519 -18.811 20.359 hybrid contribution 1.358 -1.204 0.784 1.977 sum -4.136 4.314 -18.026 18.991 Atomic orbital electron populations 1.21798 0.93125 1.02271 1.02622 1.19738 0.96679 0.95869 0.91094 1.21801 1.01157 0.94252 1.02624 1.26881 1.02455 0.98653 0.96920 1.65969 1.22588 1.30148 0.98533 1.22096 0.97572 0.91911 0.99853 1.23819 1.05793 1.01412 0.94642 1.22198 1.06995 1.00499 0.90233 1.74004 1.07763 1.12718 1.04876 1.49191 1.52788 1.26865 1.06014 1.18621 0.94104 0.97177 0.70722 0.93798 1.22216 0.96414 0.98270 1.04147 1.21171 1.02046 1.42280 0.91832 0.92174 1.24859 0.96959 0.94953 0.96782 1.69873 1.32479 1.44961 1.04919 0.86460 0.82865 0.79463 0.78053 1.20128 1.21006 1.20132 1.83658 1.48234 1.27910 1.02742 0.92581 0.91434 0.91948 0.89694 0.92571 0.91951 0.91423 0.80200 0.87538 0.79286 0.95428 0.88986 0.96748 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.17 37.16 0.34 -0.83 16 2 C -0.01 -0.10 3.35 -91.78 -0.31 -0.41 16 3 C -0.14 -1.18 9.17 37.16 0.34 -0.84 16 4 C 0.03 0.36 5.90 -13.42 -0.08 0.28 16 5 N -0.46 -6.83 10.50 -11.51 -0.12 -6.95 16 6 C 0.04 0.65 11.07 -18.73 -0.21 0.44 16 7 C -0.13 -2.07 6.50 -37.08 -0.24 -2.31 16 8 C 0.01 0.16 11.04 -14.87 -0.16 -0.01 16 9 N -0.18 -3.60 11.20 32.04 0.36 -3.24 16 10 N -0.61 -13.33 6.10 -5.88 -0.04 -13.36 16 11 C 0.30 7.43 3.23 -69.08 -0.22 7.21 16 12 H 0.04 1.23 8.14 -51.93 -0.42 0.80 16 13 C -0.15 -3.68 9.29 37.16 0.35 -3.33 16 14 C -0.53 -14.16 8.74 -34.44 -0.30 -14.46 16 15 H 0.06 1.55 7.79 -52.48 -0.41 1.14 16 16 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -24.43 11.32 55.43 0.63 -23.80 16 18 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 S 0.12 1.45 23.15 -107.50 -2.49 -1.04 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.62 8.12 -51.92 -0.42 0.20 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.18 2.96 8.04 -52.49 -0.42 2.53 16 31 H 0.11 1.61 8.03 -52.49 -0.42 1.19 16 32 H 0.37 7.42 8.58 -182.59 -1.57 5.85 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -28.17 324.08 -8.88 -37.06 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.49 Total: 3.46 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.59 Total: -12.55 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.83 Total: -47.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.49 Total: -1.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.17 -8.88 -37.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.473 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds