Wall clock time and date at job start Mon Mar 30 2020 07:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 C 1.50698 * 109.47049 * 120.00595 * 2 1 3 5 5 N 1.29128 * 124.77907 * 299.96914 * 4 2 1 6 6 C 1.31389 * 117.32766 * 180.02562 * 5 4 2 7 7 C 1.35471 * 114.13721 * 359.97438 * 6 5 4 8 8 C 1.46866 * 126.11943 * 179.97438 * 7 6 5 9 9 N 1.29933 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.40109 * 119.99828 * 180.02562 * 9 8 7 11 11 C 1.46498 * 119.99760 * 180.27595 * 10 9 8 12 12 H 1.08998 * 109.47386 * 329.72195 * 11 10 9 13 13 C 1.52999 * 109.47214 * 89.72111 * 11 10 9 14 14 C 1.50697 * 109.46790 * 209.72098 * 11 10 9 15 15 H 1.08003 * 120.00582 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99874 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00084 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99742 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46994 * 60.00871 * 18 16 14 20 20 H 1.48504 * 109.46752 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47640 * 300.00344 * 18 16 14 22 22 S 1.70947 * 124.78320 * 120.24390 * 4 2 1 23 23 H 1.08994 * 109.47575 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47185 * 299.99685 * 1 2 3 25 25 H 1.09003 * 109.47367 * 59.99545 * 1 2 3 26 26 H 1.09008 * 109.46729 * 240.00039 * 2 1 3 27 27 H 1.09004 * 109.47245 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47056 * 300.00014 * 3 2 1 29 29 H 1.08999 * 109.47095 * 60.00593 * 3 2 1 30 30 H 1.08002 * 122.93007 * 180.02562 * 6 5 4 31 31 H 1.08002 * 119.99420 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99794 * 359.97438 * 10 9 8 33 33 H 1.08999 * 109.47020 * 60.00304 * 13 11 10 34 34 H 1.09003 * 109.47035 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.47195 * 299.99379 * 13 11 10 36 36 H 0.96999 * 120.00094 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7783 -0.3505 2.4442 6 6 2.2932 -1.0781 3.4094 7 6 3.0339 -2.1269 2.9777 8 6 3.7266 -3.1052 3.8263 9 7 3.6581 -3.0068 5.1201 10 7 4.3193 -3.9398 5.9296 11 6 4.2372 -3.8323 7.3884 12 1 4.1265 -2.7851 7.6699 13 6 3.0295 -4.6258 7.8910 14 6 5.4952 -4.3879 8.0046 15 1 6.2778 -4.7814 7.3728 16 6 5.6475 -4.3930 9.3750 17 7 4.6947 -3.9135 10.1443 18 14 7.2065 -5.0824 10.1388 19 1 8.3791 -4.3130 9.6505 20 1 7.1233 -4.9734 11.6175 21 1 7.3564 -6.5093 9.7558 22 16 3.0241 -2.1028 1.2159 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.1387 -0.8595 4.4558 31 1 4.2928 -3.9065 3.3749 32 1 4.8279 -4.6594 5.5242 33 1 3.1402 -5.6730 7.6096 34 1 2.9687 -4.5462 8.9764 35 1 2.1196 -4.2239 7.4454 36 1 4.8017 -3.9174 11.1083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771884985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:55 Heat of formation + Delta-G solvation = 50.527881 kcal Electronic energy + Delta-G solvation = -16981.556495 eV Core-core repulsion = 14206.256396 eV Total energy + Delta-G solvation = -2775.300099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74859 -38.23410 -36.52533 -35.72701 -33.48139 -31.07121 -28.49229 -27.98782 -27.33362 -26.55890 -23.87260 -22.58185 -21.97497 -19.74924 -19.17091 -18.50608 -17.33549 -17.04376 -16.19171 -15.82793 -15.70997 -15.18237 -15.07422 -14.57288 -14.42307 -14.19993 -13.79983 -13.40268 -12.97524 -12.92156 -12.79035 -12.61945 -12.53207 -12.46042 -12.26209 -12.12280 -12.03592 -11.86086 -11.27756 -11.06433 -10.63939 -10.48119 -10.41598 -9.86205 -8.49600 -8.19801 -6.37549 -0.52450 0.27754 0.73903 1.38549 1.42594 1.44283 1.52208 2.12225 2.13840 2.45207 3.09222 3.18150 3.82357 3.94377 4.14023 4.21619 4.28781 4.60395 4.69422 4.73315 4.86642 4.93711 4.95372 5.00439 5.07174 5.11544 5.14620 5.24287 5.39790 5.48140 5.49173 5.71139 5.82451 6.11400 6.34167 6.78283 6.81519 7.33816 7.64714 8.85024 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.047008 B = 0.003089 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.502369 B = 9063.377287 C = 9189.166539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.016 4.016 3 C -0.138 4.138 4 C 0.038 3.962 5 N -0.488 5.488 6 C 0.043 3.957 7 C -0.180 4.180 8 C 0.051 3.949 9 N -0.229 5.229 10 N -0.631 5.631 11 C 0.307 3.693 12 H 0.002 0.998 13 C -0.137 4.137 14 C -0.550 4.550 15 H 0.063 0.937 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.267 1.267 22 S 0.196 5.804 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.164 0.836 31 H 0.130 0.870 32 H 0.377 0.623 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.017 0.983 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 4.901 -22.442 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 C -0.196 4.196 4 C -0.240 4.240 5 N -0.202 5.202 6 C -0.113 4.113 7 C -0.303 4.303 8 C -0.160 4.160 9 N -0.041 5.041 10 N -0.368 5.368 11 C 0.203 3.797 12 H 0.020 0.980 13 C -0.197 4.197 14 C -0.589 4.589 15 H 0.081 0.919 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.192 1.192 22 S 0.452 5.548 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.181 0.819 31 H 0.147 0.853 32 H 0.214 0.786 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.030 5.286 -21.965 23.145 hybrid contribution 1.090 -0.970 1.402 2.024 sum -3.939 4.316 -20.563 21.377 Atomic orbital electron populations 1.21794 0.92429 1.02353 1.03037 1.20059 0.97244 0.96251 0.90303 1.21798 1.01051 0.93758 1.03040 1.27735 1.00575 0.98367 0.97299 1.66033 1.23997 1.30916 0.99272 1.22042 0.97307 0.92159 0.99798 1.23936 1.07314 1.01780 0.97266 1.22686 1.03930 0.99774 0.89595 1.74030 1.10158 1.13649 1.06236 1.48592 1.55077 1.28318 1.04832 1.18167 0.93924 0.94534 0.73062 0.97965 1.22034 0.96582 0.98472 1.02587 1.21486 1.02687 1.42360 0.92397 0.91856 1.25719 1.00013 0.95145 0.97241 1.70007 1.34271 1.45840 1.05122 0.85414 0.78903 0.79030 0.77091 1.19793 1.20661 1.19157 1.83361 1.46467 1.26318 0.98649 0.92675 0.93354 0.89264 0.86781 0.92723 0.89257 0.93351 0.81924 0.85287 0.78561 0.94891 0.91144 0.96362 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.17 71.98 0.66 -1.25 16 2 C -0.02 -0.24 3.35 -11.54 -0.04 -0.28 16 3 C -0.14 -1.93 9.17 71.98 0.66 -1.27 16 4 C 0.04 0.84 5.90 88.51 0.52 1.36 16 5 N -0.49 -14.15 10.50 -190.33 -2.00 -16.15 16 6 C 0.04 1.38 11.07 84.12 0.93 2.32 16 7 C -0.18 -5.38 6.50 23.89 0.16 -5.22 16 8 C 0.05 1.70 11.04 87.23 0.96 2.66 16 9 N -0.23 -9.50 11.20 -52.54 -0.59 -10.09 16 10 N -0.63 -28.27 6.10 -172.53 -1.05 -29.32 16 11 C 0.31 16.09 3.23 44.24 0.14 16.23 16 12 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 13 C -0.14 -6.94 9.29 71.98 0.67 -6.27 16 14 C -0.55 -29.84 8.74 25.60 0.22 -29.62 16 15 H 0.06 3.30 7.79 -2.91 -0.02 3.28 16 16 C 0.02 1.05 5.30 84.66 0.45 1.49 16 17 N -0.91 -51.87 11.32 21.45 0.24 -51.63 16 18 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 S 0.20 4.13 23.15 -56.49 -1.31 2.82 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.11 1.09 8.12 -2.38 -0.02 1.07 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.16 5.67 8.04 -2.91 -0.02 5.64 16 31 H 0.13 3.65 8.03 -2.91 -0.02 3.63 16 32 H 0.38 15.31 8.58 -213.31 -1.83 13.48 16 33 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -62.71 324.08 1.90 -60.81 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.76 Total: 19.01 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 5.34 Total: -19.85 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -3.40 Total: -107.18 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.31 Total: 2.82 kcal Total: -62.71 1.90 -60.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771884985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.340 kcal (2) G-P(sol) polarization free energy of solvation -62.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds