Wall clock time and date at job start Mon Mar 30 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46746 * 2 1 4 4 C 1.50700 * 109.46908 * 179.97438 * 3 2 1 5 5 N 1.29920 * 125.37043 * 89.99989 * 4 3 2 6 6 C 1.36104 * 108.47729 * 180.02562 * 5 4 3 7 7 C 1.47270 * 126.46179 * 179.97438 * 6 5 4 8 8 O 1.21531 * 120.00490 * 179.97438 * 7 6 5 9 9 O 1.34781 * 119.99828 * 0.02562 * 7 6 5 10 10 C 1.45208 * 116.99806 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46671 * 30.00294 * 10 9 7 12 12 C 1.50700 * 109.46717 * 149.99397 * 10 9 7 13 13 H 1.07998 * 120.00370 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99824 * 180.02562 * 12 10 9 15 15 N 1.31523 * 120.00027 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99983 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47448 * 90.00055 * 16 14 12 18 18 H 1.48502 * 109.46950 * 209.99961 * 16 14 12 19 19 H 1.48502 * 109.46954 * 329.99800 * 16 14 12 20 20 C 1.52992 * 109.47166 * 270.00004 * 10 9 7 21 21 C 1.52997 * 109.47482 * 65.00081 * 20 10 9 22 22 C 1.36170 * 107.08162 * 0.22724 * 6 5 4 23 23 O 1.34063 * 125.37044 * 270.02435 * 4 3 2 24 24 H 1.09003 * 109.47103 * 60.00132 * 1 2 3 25 25 H 1.09006 * 109.47550 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47529 * 300.00266 * 1 2 3 27 27 H 1.08995 * 109.47131 * 240.00088 * 2 1 3 28 28 H 1.08995 * 109.46830 * 119.99742 * 2 1 3 29 29 H 1.08995 * 109.47233 * 60.00150 * 3 2 1 30 30 H 1.09003 * 109.47211 * 299.99802 * 3 2 1 31 31 H 0.96993 * 119.99651 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.47103 * 304.99834 * 20 10 9 33 33 H 1.08998 * 109.46862 * 185.00646 * 20 10 9 34 34 H 1.09002 * 109.47153 * 59.99783 * 21 20 10 35 35 H 1.09001 * 109.46832 * 299.99974 * 21 20 10 36 36 H 1.09004 * 109.47261 * 179.97438 * 21 20 10 37 37 H 1.08000 * 126.53562 * 179.77189 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.2994 1.4424 -1.0584 6 6 5.6015 1.4419 -0.6624 7 6 6.7835 1.4411 -1.5409 8 8 7.8991 1.4412 -1.0587 9 8 6.6281 1.4413 -2.8797 10 6 7.8372 1.4410 -3.6837 11 1 8.6324 0.9268 -3.1438 12 6 7.5740 0.7306 -4.9865 13 1 6.5958 0.3208 -5.1900 14 6 8.5821 0.6039 -5.9185 15 7 9.7736 1.1026 -5.6704 16 14 8.2556 -0.2760 -7.5337 17 1 7.7828 0.7038 -8.5444 18 1 9.5083 -0.9145 -8.0115 19 1 7.2163 -1.3167 -7.3290 20 6 8.2623 2.8833 -3.9660 21 6 8.6494 3.5672 -2.6532 22 6 5.6054 1.4366 0.6993 23 8 4.3225 1.4423 1.0942 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6765 1.9563 -0.8900 31 1 10.4828 1.0131 -6.3260 32 1 7.4345 3.4226 -4.4263 33 1 9.1173 2.8844 -4.6421 34 1 9.4773 3.0279 -2.1929 35 1 7.7944 3.5661 -1.9771 36 1 8.9527 4.5947 -2.8544 37 1 6.4750 1.4314 1.3397 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802218708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:52 Heat of formation + Delta-G solvation = -106.315657 kcal Electronic energy + Delta-G solvation = -20187.897379 eV Core-core repulsion = 16930.750412 eV Total energy + Delta-G solvation = -3257.146967 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.56907 -41.25672 -37.74723 -36.45665 -35.82825 -35.43856 -33.38175 -31.78133 -29.43333 -28.16459 -26.22662 -24.90732 -23.31495 -22.61871 -21.85741 -21.32997 -19.49222 -18.62652 -18.10657 -17.93254 -17.19739 -16.96575 -16.46796 -15.95226 -15.72761 -14.98212 -14.92207 -14.68134 -14.20765 -14.07960 -13.43249 -13.35050 -13.18194 -13.01484 -12.85889 -12.76770 -12.58459 -12.47524 -12.17040 -12.10044 -11.92715 -11.82052 -11.66984 -11.58878 -11.43268 -10.88033 -10.56012 -10.17713 -8.30059 -6.46869 -0.12313 0.81918 1.38941 1.42192 1.43786 1.53543 1.85582 1.98977 2.37725 2.85948 2.99219 3.63243 3.81320 4.03472 4.07840 4.24789 4.33648 4.35698 4.42171 4.46724 4.56591 4.70764 4.75693 4.78741 4.93546 4.96790 5.04927 5.17194 5.25153 5.28438 5.30847 5.46734 5.47120 5.62159 5.86436 6.04969 6.37827 6.57201 6.89169 7.23779 8.77042 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.004688 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.105809 B = 5971.446367 C = 6984.215289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.021 4.021 4 C 0.205 3.795 5 N -0.483 5.483 6 C -0.091 4.091 7 C 0.535 3.465 8 O -0.528 6.528 9 O -0.351 6.351 10 C 0.223 3.777 11 H 0.013 0.987 12 C -0.554 4.554 13 H 0.059 0.941 14 C 0.021 3.979 15 N -0.912 5.912 16 Si 0.982 3.018 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.269 1.269 20 C -0.129 4.129 21 C -0.129 4.129 22 C 0.051 3.949 23 O -0.185 6.185 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.272 0.728 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.479 1.049 13.855 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.059 4.059 4 C -0.005 4.005 5 N -0.212 5.212 6 C -0.208 4.208 7 C 0.381 3.619 8 O -0.420 6.420 9 O -0.266 6.266 10 C 0.170 3.830 11 H 0.031 0.969 12 C -0.591 4.591 13 H 0.077 0.923 14 C -0.179 4.179 15 N -0.549 5.549 16 Si 0.804 3.196 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.194 1.194 20 C -0.167 4.167 21 C -0.187 4.187 22 C -0.023 4.023 23 O -0.071 6.071 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -15.173 1.077 13.237 20.164 hybrid contribution 0.931 -0.431 -0.361 1.087 sum -14.242 0.647 12.876 19.210 Atomic orbital electron populations 1.21724 0.92796 1.02752 1.03081 1.21536 0.97958 0.94007 1.02474 1.20554 0.77491 1.00478 1.07341 1.27296 0.97767 0.98084 0.77349 1.70871 1.00841 1.18011 1.31457 1.20796 0.90764 1.16394 0.92838 1.19924 0.87053 0.72353 0.82592 1.90794 1.26107 1.48194 1.76869 1.86639 1.41205 1.81677 1.17081 1.20520 0.79604 0.94941 0.87909 0.96880 1.21287 0.98687 1.37913 1.01235 0.92253 1.25775 0.94100 0.95855 1.02179 1.69996 1.02844 1.45067 1.37025 0.85207 0.77992 0.78590 0.77765 1.19105 1.19783 1.19395 1.21873 1.01688 0.95106 0.98077 1.21712 0.99898 1.00100 0.96955 1.25825 0.86072 0.96513 0.93898 1.84441 1.15974 1.69036 1.37610 0.92065 0.91984 0.90743 0.93102 0.91050 0.85280 0.86842 0.91836 0.94020 0.89046 0.93877 0.95012 0.91691 0.71622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 3 C -0.02 -0.32 5.84 29.85 0.17 -0.14 16 4 C 0.21 5.18 7.56 88.39 0.67 5.85 16 5 N -0.48 -17.21 11.36 -293.09 -3.33 -20.54 16 6 C -0.09 -3.40 7.04 40.38 0.28 -3.12 16 7 C 0.54 24.98 6.41 70.20 0.45 25.43 16 8 O -0.53 -25.39 14.07 19.73 0.28 -25.11 16 9 O -0.35 -18.88 9.82 -56.92 -0.56 -19.44 16 10 C 0.22 12.84 2.25 29.85 0.07 12.91 16 11 H 0.01 0.84 7.16 -2.39 -0.02 0.83 16 12 C -0.55 -33.11 8.90 25.60 0.23 -32.88 16 13 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 14 C 0.02 1.19 5.29 84.65 0.45 1.64 16 15 N -0.91 -52.93 11.30 21.45 0.24 -52.69 16 16 Si 0.98 44.17 29.54 68.60 2.03 46.20 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C -0.13 -6.82 5.49 30.59 0.17 -6.65 16 21 C -0.13 -5.87 8.56 71.98 0.62 -5.25 16 22 C 0.05 1.33 11.95 67.34 0.80 2.13 16 23 O -0.18 -4.26 10.72 0.44 0.00 -4.26 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 5.15 5.95 -2.39 -0.01 5.14 16 34 H 0.04 2.02 7.79 -2.39 -0.02 2.00 16 35 H 0.03 1.40 6.06 -2.39 -0.01 1.39 16 36 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.27 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -73.30 317.66 4.53 -68.77 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.06 Total: 9.45 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 4.80 Total: -2.39 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -3.09 Total: -73.22 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.28 Total: -48.81 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -73.30 4.53 -68.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802218708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.547 kcal (2) G-P(sol) polarization free energy of solvation -73.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds