Wall clock time and date at job start Mon Mar 30 2020 07:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47317 * 2 1 4 4 N 1.29911 * 125.36975 * 90.27956 * 3 2 1 5 5 C 1.36103 * 108.47552 * 180.14466 * 4 3 2 6 6 C 1.47272 * 126.46328 * 179.88266 * 5 4 3 7 7 O 1.21533 * 120.00312 * 179.68875 * 6 5 4 8 8 O 1.34781 * 119.99835 * 359.41366 * 6 5 4 9 9 C 1.45193 * 117.00129 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47445 * 30.00127 * 9 8 6 11 11 C 1.50698 * 109.47332 * 149.99875 * 9 8 6 12 12 H 1.08001 * 119.99835 * 5.45292 * 11 9 8 13 13 C 1.37874 * 120.00328 * 185.45366 * 11 9 8 14 14 N 1.31515 * 120.00039 * 9.48992 * 13 11 9 15 15 Si 1.86802 * 120.00222 * 189.49436 * 13 11 9 16 16 H 1.48500 * 109.47519 * 84.99372 * 15 13 11 17 17 H 1.48506 * 109.47097 * 204.99397 * 15 13 11 18 18 H 1.48505 * 109.46909 * 324.99050 * 15 13 11 19 19 C 1.53001 * 109.47352 * 269.99950 * 9 8 6 20 20 C 1.53004 * 109.47189 * 64.77795 * 19 9 8 21 21 C 1.36176 * 107.07863 * 359.62250 * 5 4 3 22 22 C 1.50706 * 126.52734 * 180.24791 * 21 5 4 23 23 O 1.34055 * 125.36605 * 269.99966 * 3 2 1 24 24 H 1.08999 * 109.47372 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46961 * 300.00273 * 1 2 3 26 26 H 1.09002 * 109.47084 * 59.99709 * 1 2 3 27 27 H 1.09002 * 109.47095 * 240.00496 * 2 1 3 28 28 H 1.08993 * 109.47287 * 120.00336 * 2 1 3 29 29 H 0.96997 * 120.00105 * 180.02562 * 14 13 11 30 30 H 1.09000 * 109.47600 * 184.77824 * 19 9 8 31 31 H 1.09005 * 109.46995 * 304.77830 * 19 9 8 32 32 H 1.09000 * 109.46873 * 300.00474 * 20 19 9 33 33 H 1.08997 * 109.46795 * 60.00237 * 20 19 9 34 34 H 1.09001 * 109.47445 * 180.02562 * 20 19 9 35 35 H 1.09006 * 109.46957 * 89.99821 * 22 21 5 36 36 H 1.08992 * 109.46658 * 209.99321 * 22 21 5 37 37 H 1.09002 * 109.47253 * 329.99996 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2879 2.1281 1.0593 5 6 2.7171 3.3576 0.6638 6 6 3.1117 4.4715 1.5428 7 8 3.4843 5.5232 1.0610 8 8 3.0544 4.3263 2.8815 9 6 3.4589 5.4653 3.6860 10 1 3.2452 6.3869 3.1445 11 6 2.6966 5.4583 4.9859 12 1 2.0459 4.6305 5.2258 13 6 2.8300 6.5087 5.8690 14 7 3.4693 7.5982 5.5032 15 14 2.1026 6.3843 7.5851 16 1 3.0646 5.6945 8.4818 17 1 1.8296 7.7476 8.1070 18 1 0.8353 5.6121 7.5308 19 6 4.9591 5.3793 3.9741 20 6 5.7382 5.5063 2.6634 21 6 2.7186 3.3618 -0.6979 22 6 3.1236 4.5062 -1.5910 23 8 2.2910 2.1524 -1.0932 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.5634 8.3371 6.1246 30 1 5.2468 6.1867 4.6474 31 1 5.1852 4.4200 4.4397 32 1 5.4506 4.6988 1.9901 33 1 5.5121 6.4655 2.1978 34 1 6.8070 5.4445 2.8685 35 1 4.1901 4.4391 -1.8063 36 1 2.5609 4.4562 -2.5231 37 1 2.9129 5.4507 -1.0894 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802799807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:48 Heat of formation + Delta-G solvation = -106.082967 kcal Electronic energy + Delta-G solvation = -20591.842297 eV Core-core repulsion = 17334.705420 eV Total energy + Delta-G solvation = -3257.136877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.60915 -41.24299 -37.76415 -36.21440 -35.44924 -35.09502 -33.46768 -32.65397 -29.53506 -28.36587 -26.07468 -25.11038 -24.10139 -22.84405 -21.87445 -21.22292 -19.35324 -18.59227 -18.21330 -17.71622 -17.00840 -16.78856 -16.35962 -15.78338 -15.30600 -14.94477 -14.80834 -14.49708 -14.16748 -14.09037 -13.58909 -13.49490 -13.36012 -13.32291 -13.16096 -12.85007 -12.62241 -12.56793 -12.43362 -12.16288 -12.05081 -11.91108 -11.81584 -11.55256 -11.40560 -10.87375 -10.58143 -9.96480 -8.32527 -6.45539 -0.16958 0.82108 1.29678 1.39510 1.42182 1.52159 1.86266 1.98417 2.37961 2.86733 2.98357 3.43184 3.81252 4.02082 4.16981 4.23995 4.31101 4.32510 4.33849 4.44111 4.52922 4.54734 4.77480 4.80941 4.95795 4.99805 5.00622 5.04892 5.07378 5.16052 5.28493 5.33896 5.47957 5.56490 5.80222 6.04304 6.37378 6.58287 6.91584 7.24190 8.77106 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.005222 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.136444 B = 5360.582758 C = 6210.253560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.023 4.023 3 C 0.201 3.799 4 N -0.481 5.481 5 C -0.096 4.096 6 C 0.536 3.464 7 O -0.520 6.520 8 O -0.352 6.352 9 C 0.222 3.778 10 H 0.019 0.981 11 C -0.556 4.556 12 H 0.058 0.942 13 C 0.024 3.976 14 N -0.912 5.912 15 Si 0.977 3.023 16 H -0.265 1.265 17 H -0.274 1.274 18 H -0.269 1.269 19 C -0.121 4.121 20 C -0.130 4.130 21 C 0.064 3.936 22 C -0.075 4.075 23 O -0.187 6.187 24 H 0.103 0.897 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.272 0.728 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -13.167 -14.557 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.010 4.010 4 N -0.210 5.210 5 C -0.213 4.213 6 C 0.382 3.618 7 O -0.412 6.412 8 O -0.267 6.267 9 C 0.169 3.831 10 H 0.037 0.963 11 C -0.593 4.593 12 H 0.076 0.924 13 C -0.176 4.176 14 N -0.549 5.549 15 Si 0.800 3.200 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.194 1.194 19 C -0.159 4.159 20 C -0.187 4.187 21 C 0.007 3.993 22 C -0.131 4.131 23 O -0.074 6.074 24 H 0.122 0.878 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.049 -12.853 -13.955 19.083 hybrid contribution -0.135 0.775 0.523 0.945 sum -2.184 -12.078 -13.431 18.195 Atomic orbital electron populations 1.21802 0.92175 1.04570 1.02082 1.20481 0.97437 0.80821 1.07361 1.27392 0.98279 0.98083 0.77207 1.70833 1.15976 1.02706 1.31442 1.20528 1.14739 0.93941 0.92043 1.19794 0.74147 0.85397 0.82511 1.90753 1.45478 1.28312 1.76620 1.86630 1.77293 1.45784 1.17027 1.20510 0.92945 0.81567 0.88066 0.96341 1.21232 1.28749 1.06855 1.02459 0.92355 1.25757 0.95479 0.93447 1.02951 1.70085 1.42628 1.05106 1.37071 0.85290 0.78894 0.77823 0.77980 1.18990 1.19876 1.19389 1.21773 0.95275 1.01040 0.97811 1.21714 0.99780 1.00420 0.96823 1.24197 0.95325 0.86579 0.93230 1.20787 1.04178 0.90028 0.98123 1.84355 1.63752 1.21519 1.37801 0.87837 0.93884 0.91991 0.85256 0.86666 0.91875 0.90943 0.93396 0.94902 0.93670 0.91484 0.86997 0.86389 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.02 -0.36 6.56 29.85 0.20 -0.16 16 3 C 0.20 5.43 7.56 88.39 0.67 6.10 16 4 N -0.48 -18.07 11.36 -293.10 -3.33 -21.40 16 5 C -0.10 -3.81 7.04 40.38 0.28 -3.53 16 6 C 0.54 25.54 6.39 70.20 0.45 25.98 16 7 O -0.52 -24.90 12.02 19.73 0.24 -24.66 16 8 O -0.35 -19.14 9.81 -56.92 -0.56 -19.70 16 9 C 0.22 12.78 2.12 29.85 0.06 12.84 16 10 H 0.02 1.19 7.10 -2.39 -0.02 1.17 16 11 C -0.56 -33.32 8.82 25.60 0.23 -33.10 16 12 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 13 C 0.02 1.38 5.16 84.65 0.44 1.82 16 14 N -0.91 -53.55 12.16 21.45 0.26 -53.29 16 15 Si 0.98 44.33 29.55 68.60 2.03 46.36 16 16 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C -0.12 -6.26 5.54 30.60 0.17 -6.09 16 20 C -0.13 -5.79 8.57 71.98 0.62 -5.18 16 21 C 0.06 1.92 7.44 25.21 0.19 2.10 16 22 C -0.08 -1.67 9.88 71.24 0.70 -0.97 16 23 O -0.19 -4.86 10.72 0.59 0.01 -4.86 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.07 3.98 6.81 -2.39 -0.02 3.97 16 31 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.03 1.44 6.07 -2.39 -0.01 1.42 16 33 H 0.04 2.08 7.78 -2.39 -0.02 2.06 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 2.57 6.48 -2.39 -0.02 2.56 16 Total: -1.00 -74.15 315.56 4.43 -69.72 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 1.07 Total: 9.34 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 4.71 Total: -1.52 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -3.07 Total: -74.68 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -0.32 Total: -49.22 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -74.15 4.43 -69.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802799807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.360 kcal (2) G-P(sol) polarization free energy of solvation -74.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds