Wall clock time and date at job start Mon Mar 30 2020 07:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 O 1.45203 * 109.46959 * 89.69323 * 7 6 5 9 9 C 1.34228 * 116.99707 * 180.02562 * 8 7 6 10 10 O 1.20834 * 120.00292 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00023 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.47368 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46937 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.46671 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00390 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00119 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99711 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00373 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47045 * 90.00076 * 18 16 14 20 20 H 1.48505 * 109.47366 * 209.99693 * 18 16 14 21 21 H 1.48493 * 109.47119 * 330.00025 * 18 16 14 22 22 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 23 23 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 24 24 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 26 26 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 27 27 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 28 28 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 30 30 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 31 31 H 1.09010 * 109.46738 * 299.99441 * 11 9 8 32 32 H 1.08996 * 109.47529 * 59.99759 * 11 9 8 33 33 H 1.08998 * 109.46839 * 299.99848 * 12 11 9 34 34 H 1.08996 * 109.46974 * 59.99441 * 12 11 9 35 35 H 1.09003 * 109.47390 * 299.99202 * 13 12 11 36 36 H 1.08996 * 109.47620 * 59.99990 * 13 12 11 37 37 H 0.97001 * 119.99852 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 8 4.5556 4.4371 -1.8113 9 6 5.0856 5.3962 -2.5866 10 8 4.3840 6.2796 -3.0195 11 6 6.5555 5.3706 -2.9181 12 6 6.8982 6.5658 -3.8097 13 6 8.3906 6.5401 -4.1457 14 6 8.7282 7.7177 -5.0233 15 1 7.9555 8.4146 -5.3129 16 6 10.0233 7.9051 -5.4576 17 7 10.9642 7.0563 -5.1054 18 14 10.4417 9.3643 -6.5460 19 1 10.8224 10.5219 -5.6972 20 1 11.5761 9.0089 -7.4360 21 1 9.2594 9.7223 -7.3700 22 8 2.2982 2.1758 -1.0840 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8898 28 1 2.1912 1.8686 2.1113 29 1 2.5770 4.4844 -2.4705 30 1 2.9194 5.4648 -1.0249 31 1 7.1365 5.4252 -1.9974 32 1 6.7934 4.4458 -3.4436 33 1 6.3171 6.5108 -4.7302 34 1 6.6601 7.4908 -3.2846 35 1 8.9713 6.5955 -3.2249 36 1 8.6290 5.6151 -4.6706 37 1 11.8754 7.1882 -5.4106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848864745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:42 Heat of formation + Delta-G solvation = -86.245414 kcal Electronic energy + Delta-G solvation = -18969.974639 eV Core-core repulsion = 15713.697983 eV Total energy + Delta-G solvation = -3256.276656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.68907 -40.38187 -36.73237 -35.06887 -34.76289 -34.33637 -32.17060 -30.90049 -28.33977 -27.09055 -24.27898 -23.88788 -22.46904 -21.36964 -21.13615 -19.87718 -17.75167 -17.58368 -16.79133 -16.61613 -16.40894 -15.86597 -15.27813 -14.92613 -14.45353 -14.34258 -13.86538 -13.64280 -13.11852 -12.96730 -12.75931 -12.25751 -12.20634 -11.92376 -11.75085 -11.62482 -11.46776 -10.89280 -10.83915 -10.82158 -10.71182 -10.59139 -10.35414 -9.75222 -9.43555 -9.14224 -9.05477 -8.34571 -5.99974 -4.01936 0.92470 2.01034 2.30648 2.37731 2.99292 3.33844 3.39834 3.44159 3.69642 4.23761 4.47156 4.47446 4.60215 4.67930 4.77121 4.92654 4.96317 5.14238 5.24104 5.29919 5.36152 5.42128 5.58703 5.61405 5.63526 5.71781 5.91503 6.03275 6.39891 6.59821 6.79517 7.05293 7.37165 7.66129 7.77497 7.87266 7.99643 8.42040 9.04762 9.62180 11.11434 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.055420 B = 0.002506 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.115528 B =11171.931424 C =11316.741180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.034 4.034 4 C -0.042 4.042 5 N -0.455 5.455 6 C 0.185 3.815 7 C 0.165 3.835 8 O -0.358 6.358 9 C 0.467 3.533 10 O -0.503 6.503 11 C -0.110 4.110 12 C -0.100 4.100 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 O -0.192 6.192 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.187 0.813 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.829 -14.939 11.551 27.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 C -0.087 4.087 4 C -0.181 4.181 5 N -0.186 5.186 6 C -0.021 4.021 7 C 0.090 3.910 8 O -0.275 6.275 9 C 0.310 3.690 10 O -0.389 6.389 11 C -0.148 4.148 12 C -0.138 4.138 13 C -0.017 4.017 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 O -0.078 6.078 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.204 0.796 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.700 -14.186 11.687 26.943 hybrid contribution 0.019 0.192 -0.858 0.880 sum -19.682 -13.994 10.829 26.466 Atomic orbital electron populations 1.21814 0.93519 1.02742 1.02825 1.20120 0.96571 0.86240 1.04802 1.23625 1.04524 0.96090 0.84494 1.23133 1.04796 0.89648 1.00535 1.70439 1.16372 1.22826 1.08938 1.25478 1.00703 0.86037 0.89902 1.20808 0.80859 0.91682 0.97620 1.86606 1.24104 1.51678 1.65115 1.24528 0.92485 0.77996 0.73966 1.90668 1.62576 1.35639 1.50046 1.21750 0.85556 1.04050 1.03397 1.21604 1.00674 0.94084 0.97412 1.19131 0.88212 0.97451 0.96864 1.21231 0.94036 1.10061 1.30471 0.92506 1.25027 0.96529 0.96508 0.96475 1.69964 1.01506 1.36358 1.45725 0.86569 0.77994 0.82791 0.80510 1.20650 1.21252 1.19844 1.84402 1.63578 1.23190 1.36632 0.92196 0.91178 0.91984 0.89549 0.88178 0.79631 0.88178 0.86678 0.87798 0.87880 0.92319 0.92282 0.96294 0.96316 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.32 16 2 C -0.04 -0.22 6.49 -27.88 -0.18 -0.40 16 3 C -0.03 -0.32 6.64 -35.69 -0.24 -0.55 16 4 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 5 N -0.45 -5.98 11.29 -11.10 -0.13 -6.10 16 6 C 0.18 2.35 7.98 -12.95 -0.10 2.25 16 7 C 0.17 2.02 6.09 36.00 0.22 2.24 16 8 O -0.36 -5.23 10.20 -39.25 -0.40 -5.63 16 9 C 0.47 7.54 7.96 36.01 0.29 7.83 16 10 O -0.50 -9.23 15.73 -18.76 -0.30 -9.53 16 11 C -0.11 -1.81 5.81 -27.88 -0.16 -1.97 16 12 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 O -0.19 -2.29 10.78 5.35 0.06 -2.24 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.19 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 30 H 0.12 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.10 1.58 8.14 -51.92 -0.42 1.15 16 32 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -33.51 328.65 -6.24 -39.75 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -5.45 Total: -4.94 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.69 Total: -6.97 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.61 Total: -32.21 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.64 Total: -17.39 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.51 -6.24 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.496 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds