Wall clock time and date at job start Mon Mar 30 2020 07:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 O 1.45203 * 109.46959 * 89.69323 * 7 6 5 9 9 C 1.34228 * 116.99707 * 180.02562 * 8 7 6 10 10 O 1.20834 * 120.00292 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00023 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.47368 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46937 * 179.97438 * 12 11 9 14 14 C 1.50702 * 109.46671 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00390 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00119 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99711 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00373 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47045 * 90.00076 * 18 16 14 20 20 H 1.48505 * 109.47366 * 209.99693 * 18 16 14 21 21 H 1.48493 * 109.47119 * 330.00025 * 18 16 14 22 22 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 23 23 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 24 24 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 26 26 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 27 27 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 28 28 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 30 30 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 31 31 H 1.09010 * 109.46738 * 299.99441 * 11 9 8 32 32 H 1.08996 * 109.47529 * 59.99759 * 11 9 8 33 33 H 1.08998 * 109.46839 * 299.99848 * 12 11 9 34 34 H 1.08996 * 109.46974 * 59.99441 * 12 11 9 35 35 H 1.09003 * 109.47390 * 299.99202 * 13 12 11 36 36 H 1.08996 * 109.47620 * 59.99990 * 13 12 11 37 37 H 0.97001 * 119.99852 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 8 4.5556 4.4371 -1.8113 9 6 5.0856 5.3962 -2.5866 10 8 4.3840 6.2796 -3.0195 11 6 6.5555 5.3706 -2.9181 12 6 6.8982 6.5658 -3.8097 13 6 8.3906 6.5401 -4.1457 14 6 8.7282 7.7177 -5.0233 15 1 7.9555 8.4146 -5.3129 16 6 10.0233 7.9051 -5.4576 17 7 10.9642 7.0563 -5.1054 18 14 10.4417 9.3643 -6.5460 19 1 10.8224 10.5219 -5.6972 20 1 11.5761 9.0089 -7.4360 21 1 9.2594 9.7223 -7.3700 22 8 2.2982 2.1758 -1.0840 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8898 28 1 2.1912 1.8686 2.1113 29 1 2.5770 4.4844 -2.4705 30 1 2.9194 5.4648 -1.0249 31 1 7.1365 5.4252 -1.9974 32 1 6.7934 4.4458 -3.4436 33 1 6.3171 6.5108 -4.7302 34 1 6.6601 7.4908 -3.2846 35 1 8.9713 6.5955 -3.2249 36 1 8.6290 5.6151 -4.6706 37 1 11.8754 7.1882 -5.4106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848864745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:42 Heat of formation + Delta-G solvation = -107.811131 kcal Electronic energy + Delta-G solvation = -18970.909799 eV Core-core repulsion = 15713.697983 eV Total energy + Delta-G solvation = -3257.211816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.52454 -41.64592 -37.98642 -36.17820 -35.94280 -35.30012 -34.11456 -31.81661 -29.97689 -28.05753 -25.98980 -24.62241 -23.37854 -22.79877 -22.00531 -21.44264 -18.95432 -18.70502 -18.27656 -17.84324 -17.64080 -17.07272 -16.46332 -16.09297 -15.68508 -15.52655 -14.87925 -14.43578 -14.30508 -14.23299 -13.88727 -13.71384 -13.47274 -13.16439 -12.66822 -12.64722 -12.55874 -12.53565 -12.43678 -12.15563 -12.02007 -11.76038 -11.62141 -11.57172 -11.40577 -11.17943 -10.53371 -9.87406 -8.19336 -6.29162 0.05753 1.08965 1.13119 1.41488 1.42241 1.50495 1.53658 1.95872 2.42738 2.83597 3.14174 3.57960 3.70315 3.88099 3.92371 4.03486 4.16753 4.18281 4.22781 4.28846 4.40675 4.63711 4.64549 4.84633 4.90545 4.98344 5.04122 5.11019 5.14800 5.15905 5.22619 5.31288 5.54317 5.73980 5.87077 6.26767 6.52933 6.60804 6.86674 7.39470 8.92220 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.055420 B = 0.002506 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.115528 B =11171.931424 C =11316.741180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.026 4.026 4 C -0.057 4.057 5 N -0.478 5.478 6 C 0.162 3.838 7 C 0.164 3.836 8 O -0.359 6.359 9 C 0.478 3.522 10 O -0.528 6.528 11 C -0.104 4.104 12 C -0.087 4.087 13 C 0.024 3.976 14 C -0.545 4.545 15 H 0.055 0.945 16 C 0.001 3.999 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.267 1.267 22 O -0.205 6.205 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.127 0.873 28 H 0.216 0.784 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.003 0.997 36 H 0.004 0.996 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 -15.799 11.988 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 C -0.080 4.080 4 C -0.196 4.196 5 N -0.210 5.210 6 C -0.043 4.043 7 C 0.090 3.910 8 O -0.275 6.275 9 C 0.323 3.677 10 O -0.417 6.417 11 C -0.142 4.142 12 C -0.124 4.124 13 C -0.013 4.013 14 C -0.583 4.583 15 H 0.074 0.926 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.191 1.191 22 O -0.091 6.091 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.145 0.855 28 H 0.232 0.768 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.623 -15.062 12.131 28.273 hybrid contribution 0.239 0.343 -0.911 1.002 sum -20.384 -14.719 11.219 27.533 Atomic orbital electron populations 1.21809 0.92729 1.03883 1.02227 1.20394 0.97088 0.83823 1.06341 1.24472 1.02684 0.97142 0.83662 1.23673 1.04923 0.88822 1.02163 1.70406 1.16801 1.24499 1.09297 1.25429 1.02304 0.86603 0.89959 1.20985 0.79360 0.92155 0.98507 1.86555 1.25807 1.50788 1.64378 1.24192 0.92070 0.77757 0.73668 1.90663 1.63135 1.36681 1.51181 1.21554 0.86394 1.02749 1.03460 1.21295 0.97313 0.95829 0.97992 1.19025 0.91080 0.95810 0.95429 1.21678 0.94428 1.11063 1.31155 0.92632 1.25926 0.96435 0.99448 0.97892 1.70074 1.01944 1.38137 1.46841 0.85482 0.77936 0.79186 0.78661 1.19820 1.20556 1.19095 1.84402 1.63667 1.23241 1.37777 0.93601 0.89165 0.91804 0.89111 0.85491 0.76767 0.86763 0.86109 0.86264 0.86126 0.92951 0.93037 0.97880 0.97801 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.04 -0.33 6.49 29.85 0.19 -0.13 16 3 C -0.03 -0.46 6.64 24.79 0.16 -0.29 16 4 C -0.06 -1.06 11.80 83.40 0.98 -0.08 16 5 N -0.48 -12.26 11.29 -303.82 -3.43 -15.69 16 6 C 0.16 4.07 7.98 88.34 0.71 4.77 16 7 C 0.16 3.94 6.09 71.23 0.43 4.37 16 8 O -0.36 -10.20 10.20 -51.40 -0.52 -10.72 16 9 C 0.48 15.10 7.96 71.24 0.57 15.67 16 10 O -0.53 -19.17 15.73 21.94 0.35 -18.82 16 11 C -0.10 -3.35 5.81 29.85 0.17 -3.17 16 12 C -0.09 -3.60 4.44 30.59 0.14 -3.46 16 13 C 0.02 1.22 4.97 29.85 0.15 1.37 16 14 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 15 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 16 C 0.00 0.05 5.46 84.65 0.46 0.52 16 17 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 18 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 O -0.20 -4.75 10.78 -3.76 -0.04 -4.79 16 23 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.22 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.11 2.37 8.13 -2.39 -0.02 2.35 16 30 H 0.12 2.72 8.13 -2.39 -0.02 2.70 16 31 H 0.12 3.49 8.14 -2.38 -0.02 3.47 16 32 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.05 2.22 8.10 -2.39 -0.02 2.20 16 34 H 0.05 2.19 8.10 -2.39 -0.02 2.17 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -71.84 328.65 4.63 -67.21 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.05 Total: 3.76 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.91 Total: -11.84 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -3.15 Total: -71.52 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.22 Total: -34.33 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -71.84 4.63 -67.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.600 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds