Wall clock time and date at job start Mon Mar 30 2020 07:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34328 * 126.44658 * 2 1 4 4 N 1.34477 * 107.67295 * 179.76729 * 3 2 1 5 5 C 1.30260 * 108.69507 * 0.41683 * 4 3 2 6 6 C 1.50701 * 125.61558 * 179.84061 * 5 4 3 7 7 C 1.52997 * 109.47212 * 89.69574 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47592 * 179.97438 * 8 7 6 10 10 O 1.20824 * 119.99883 * 0.02562 * 9 8 7 11 11 O 1.34232 * 120.00659 * 180.02562 * 9 8 7 12 12 C 1.45186 * 117.00492 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47468 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47630 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99640 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00260 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99842 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00084 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47440 * 89.99168 * 18 16 14 20 20 H 1.48495 * 109.47076 * 209.99798 * 18 16 14 21 21 H 1.48507 * 109.46809 * 329.99254 * 18 16 14 22 22 O 1.33962 * 108.76467 * 359.58084 * 5 4 3 23 23 H 1.08995 * 109.47273 * 269.98038 * 1 2 3 24 24 H 1.09006 * 109.46913 * 29.97663 * 1 2 3 25 25 H 1.08999 * 109.47563 * 149.97579 * 1 2 3 26 26 H 1.08006 * 126.16596 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47060 * 209.69630 * 6 5 4 28 28 H 1.09001 * 109.47380 * 329.69717 * 6 5 4 29 29 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 30 30 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 31 31 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 32 32 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 33 33 H 1.09003 * 109.47214 * 299.99847 * 12 11 9 34 34 H 1.08997 * 109.47495 * 59.99469 * 12 11 9 35 35 H 1.09003 * 109.47119 * 299.99776 * 13 12 11 36 36 H 1.09000 * 109.47083 * 59.99671 * 13 12 11 37 37 H 0.97001 * 119.99411 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5764 -0.6548 -0.0006 6 6 4.8004 -1.5341 -0.0011 7 6 5.2150 -1.8319 1.4412 8 6 6.4571 -2.7250 1.4408 9 6 6.8659 -3.0178 2.8614 10 8 6.2287 -2.5596 3.7800 11 8 7.9378 -3.7878 3.1064 12 6 8.2726 -4.0281 4.4985 13 6 9.5139 -4.9190 4.5782 14 6 9.8618 -5.1680 6.0232 15 1 9.2580 -4.7338 6.8065 16 6 10.9513 -5.9491 6.3453 17 7 11.6867 -6.4773 5.3915 18 14 11.3820 -6.2583 8.1365 19 1 10.6804 -7.4780 8.6109 20 1 12.8489 -6.4486 8.2671 21 1 10.9592 -5.0938 8.9554 22 8 2.3075 -1.0840 -0.0004 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.9822 2.1113 0.0004 27 1 4.5761 -2.4688 -0.5151 28 1 5.6146 -1.0232 -0.5151 29 1 5.4393 -0.8972 1.9551 30 1 4.4008 -2.3427 1.9552 31 1 6.2324 -3.6597 0.9270 32 1 7.2715 -2.2145 0.9267 33 1 8.4754 -3.0780 4.9927 34 1 7.4370 -4.5236 4.9928 35 1 9.3116 -5.8692 4.0839 36 1 10.3493 -4.4230 4.0840 37 1 12.4530 -7.0271 5.6182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853920805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:59 Heat of formation + Delta-G solvation = -93.603118 kcal Electronic energy + Delta-G solvation = -18829.450358 eV Core-core repulsion = 15572.854648 eV Total energy + Delta-G solvation = -3256.595710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.58244 -39.97887 -36.46235 -35.35812 -34.81664 -33.34718 -32.66359 -30.46742 -29.41268 -26.29753 -24.97606 -23.24816 -22.34446 -21.14776 -20.94899 -20.22770 -17.55557 -17.14110 -16.88553 -16.41490 -16.12872 -15.75849 -15.22235 -14.73084 -14.50479 -14.30805 -13.67772 -13.52451 -13.31483 -12.88267 -12.75635 -12.47922 -12.30934 -12.23689 -11.77488 -11.50408 -11.21655 -11.03549 -11.02022 -10.76511 -10.74976 -10.68712 -10.21648 -9.63867 -9.61130 -9.29751 -8.92391 -8.44493 -6.10580 -4.14851 1.15214 2.33925 2.42758 2.58686 3.18236 3.28558 3.34752 3.39492 3.78445 4.38846 4.41957 4.62370 4.64789 4.74704 4.81337 4.91591 4.98073 5.14113 5.20749 5.25970 5.29672 5.38640 5.48665 5.62658 5.73453 5.85202 5.99838 6.08005 6.09905 6.11567 6.64322 7.02014 7.48566 7.56110 7.62357 7.86780 8.19272 8.27292 8.90692 9.49514 11.00908 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.056901 B = 0.002381 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.964862 B =11757.495178 C =11974.302223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.054 4.054 3 C -0.043 4.043 4 N -0.480 5.480 5 C 0.196 3.804 6 C -0.023 4.023 7 C -0.106 4.106 8 C -0.114 4.114 9 C 0.454 3.546 10 O -0.520 6.520 11 O -0.358 6.358 12 C 0.075 3.925 13 C 0.024 3.976 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 O -0.200 6.200 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.182 0.818 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.469 11.305 -14.511 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C -0.182 4.182 4 N -0.209 5.209 5 C -0.011 4.011 6 C -0.061 4.061 7 C -0.145 4.145 8 C -0.152 4.152 9 C 0.297 3.703 10 O -0.409 6.409 11 O -0.274 6.274 12 C 0.002 3.998 13 C -0.013 4.013 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 O -0.088 6.088 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.199 0.801 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.927 11.628 -14.231 26.381 hybrid contribution -0.385 -0.478 1.128 1.284 sum -19.313 11.151 -13.103 25.865 Atomic orbital electron populations 1.20267 0.84017 1.04298 1.03874 1.23482 0.95103 0.84647 1.07438 1.23087 0.87858 1.00360 1.06895 1.70452 1.23059 1.09244 1.18147 1.26235 0.84269 0.90336 1.00242 1.20148 0.89169 0.97596 0.99185 1.21400 0.97330 1.01166 0.94566 1.21303 0.99305 1.02532 0.92017 1.23490 0.78720 0.75833 0.92255 1.90638 1.53409 1.49742 1.47158 1.86518 1.43938 1.62623 1.34343 1.23630 1.00102 1.00522 0.75517 1.19172 0.90055 0.94317 0.97757 1.20986 1.12474 1.31735 0.91268 0.92278 1.24989 0.95951 0.95460 0.97812 1.69975 1.17613 1.33177 1.32068 0.86464 0.77567 0.78726 0.84510 1.20482 1.21046 1.19732 1.84394 1.17927 1.36604 1.69860 0.89748 0.89010 0.90348 0.80054 0.88462 0.87137 0.89977 0.90454 0.87477 0.87366 0.92340 0.92365 0.95359 0.95330 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 36.00 0.38 0.04 16 2 C -0.05 -0.50 7.39 -35.69 -0.26 -0.76 16 3 C -0.04 -0.44 11.80 -17.77 -0.21 -0.65 16 4 N -0.48 -5.94 11.29 -11.10 -0.13 -6.07 16 5 C 0.20 2.18 7.60 -12.94 -0.10 2.08 16 6 C -0.02 -0.19 5.84 -27.88 -0.16 -0.35 16 7 C -0.11 -1.10 4.49 -26.74 -0.12 -1.22 16 8 C -0.11 -1.21 5.81 -27.89 -0.16 -1.37 16 9 C 0.45 7.63 7.96 36.00 0.29 7.92 16 10 O -0.52 -10.24 15.73 -18.75 -0.29 -10.54 16 11 O -0.36 -7.07 10.22 -39.26 -0.40 -7.47 16 12 C 0.07 1.68 5.40 37.16 0.20 1.88 16 13 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 14 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 O -0.20 -2.24 10.78 5.36 0.06 -2.18 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 34 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -34.53 328.66 -6.26 -40.79 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -5.45 Total: -4.74 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.71 Total: -5.55 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.61 Total: -31.74 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.64 Total: -20.19 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.53 -6.26 -40.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853920805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.810 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds