Wall clock time and date at job start Mon Mar 30 2020 07:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34328 * 126.44658 * 2 1 4 4 N 1.34477 * 107.67295 * 179.76729 * 3 2 1 5 5 C 1.30260 * 108.69507 * 0.41683 * 4 3 2 6 6 C 1.50701 * 125.61558 * 179.84061 * 5 4 3 7 7 C 1.52997 * 109.47212 * 89.69574 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47592 * 179.97438 * 8 7 6 10 10 O 1.20824 * 119.99883 * 0.02562 * 9 8 7 11 11 O 1.34232 * 120.00659 * 180.02562 * 9 8 7 12 12 C 1.45186 * 117.00492 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47468 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.47630 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99640 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00260 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99842 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00084 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47440 * 89.99168 * 18 16 14 20 20 H 1.48495 * 109.47076 * 209.99798 * 18 16 14 21 21 H 1.48507 * 109.46809 * 329.99254 * 18 16 14 22 22 O 1.33962 * 108.76467 * 359.58084 * 5 4 3 23 23 H 1.08995 * 109.47273 * 269.98038 * 1 2 3 24 24 H 1.09006 * 109.46913 * 29.97663 * 1 2 3 25 25 H 1.08999 * 109.47563 * 149.97579 * 1 2 3 26 26 H 1.08006 * 126.16596 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47060 * 209.69630 * 6 5 4 28 28 H 1.09001 * 109.47380 * 329.69717 * 6 5 4 29 29 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 30 30 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 31 31 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 32 32 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 33 33 H 1.09003 * 109.47214 * 299.99847 * 12 11 9 34 34 H 1.08997 * 109.47495 * 59.99469 * 12 11 9 35 35 H 1.09003 * 109.47119 * 299.99776 * 13 12 11 36 36 H 1.09000 * 109.47083 * 59.99671 * 13 12 11 37 37 H 0.97001 * 119.99411 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5764 -0.6548 -0.0006 6 6 4.8004 -1.5341 -0.0011 7 6 5.2150 -1.8319 1.4412 8 6 6.4571 -2.7250 1.4408 9 6 6.8659 -3.0178 2.8614 10 8 6.2287 -2.5596 3.7800 11 8 7.9378 -3.7878 3.1064 12 6 8.2726 -4.0281 4.4985 13 6 9.5139 -4.9190 4.5782 14 6 9.8618 -5.1680 6.0232 15 1 9.2580 -4.7338 6.8065 16 6 10.9513 -5.9491 6.3453 17 7 11.6867 -6.4773 5.3915 18 14 11.3820 -6.2583 8.1365 19 1 10.6804 -7.4780 8.6109 20 1 12.8489 -6.4486 8.2671 21 1 10.9592 -5.0938 8.9554 22 8 2.3075 -1.0840 -0.0004 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.9822 2.1113 0.0004 27 1 4.5761 -2.4688 -0.5151 28 1 5.6146 -1.0232 -0.5151 29 1 5.4393 -0.8972 1.9551 30 1 4.4008 -2.3427 1.9552 31 1 6.2324 -3.6597 0.9270 32 1 7.2715 -2.2145 0.9267 33 1 8.4754 -3.0780 4.9927 34 1 7.4370 -4.5236 4.9928 35 1 9.3116 -5.8692 4.0839 36 1 10.3493 -4.4230 4.0840 37 1 12.4530 -7.0271 5.6182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853920805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:59 Heat of formation + Delta-G solvation = -116.626216 kcal Electronic energy + Delta-G solvation = -18830.448715 eV Core-core repulsion = 15572.854648 eV Total energy + Delta-G solvation = -3257.594066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.32716 -41.43934 -37.91190 -36.29169 -35.62524 -35.44916 -33.33143 -32.36092 -30.32919 -27.39204 -26.56253 -24.30414 -23.18982 -22.81225 -21.87056 -21.49451 -19.01460 -18.22917 -17.95205 -17.77379 -17.64487 -17.14595 -16.47487 -16.20509 -15.45894 -15.24895 -14.75176 -14.41484 -14.36271 -14.17852 -13.92596 -13.38178 -13.29949 -13.17845 -13.02641 -12.92351 -12.67133 -12.57462 -12.51409 -12.31539 -11.86647 -11.81882 -11.55003 -11.52269 -11.45640 -11.30962 -10.61723 -9.62318 -8.27701 -6.40810 0.42390 1.23362 1.40414 1.42345 1.53128 1.59458 1.70717 1.89073 2.40067 3.06496 3.10103 3.64582 3.82810 3.95687 3.97922 4.09694 4.20691 4.21725 4.30076 4.35848 4.56623 4.59475 4.65075 4.66409 4.70609 4.79343 5.03499 5.05838 5.17576 5.21634 5.28649 5.36057 5.46692 5.59092 5.75913 6.06320 6.71568 6.73122 6.78679 7.28829 8.84781 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.056901 B = 0.002381 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.964862 B =11757.495178 C =11974.302223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.055 4.055 3 C -0.067 4.067 4 N -0.512 5.512 5 C 0.180 3.820 6 C -0.016 4.016 7 C -0.097 4.097 8 C -0.101 4.101 9 C 0.449 3.551 10 O -0.553 6.553 11 O -0.365 6.365 12 C 0.090 3.910 13 C 0.030 3.970 14 C -0.552 4.552 15 H 0.063 0.937 16 C 0.006 3.994 17 N -0.925 5.925 18 Si 0.973 3.027 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.265 1.265 22 O -0.215 6.215 23 H 0.093 0.907 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.204 0.796 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.429 11.451 -14.947 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 C -0.204 4.204 4 N -0.242 5.242 5 C -0.026 4.026 6 C -0.053 4.053 7 C -0.136 4.136 8 C -0.138 4.138 9 C 0.294 3.706 10 O -0.444 6.444 11 O -0.282 6.282 12 C 0.016 3.984 13 C -0.007 4.007 14 C -0.589 4.589 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.564 5.564 18 Si 0.797 3.203 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.189 1.189 22 O -0.102 6.102 23 H 0.112 0.888 24 H 0.134 0.866 25 H 0.104 0.896 26 H 0.221 0.779 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.910 11.787 -14.686 27.404 hybrid contribution -0.167 -0.467 1.201 1.300 sum -20.077 11.320 -13.484 26.703 Atomic orbital electron populations 1.20491 0.81076 1.05850 1.04897 1.24290 0.96721 0.83973 1.05759 1.23555 0.87423 1.01810 1.07639 1.70424 1.24509 1.10169 1.19064 1.26761 0.84997 0.90494 1.00393 1.20228 0.88671 0.98733 0.97689 1.21269 0.96693 0.99730 0.95912 1.21484 1.00071 1.04438 0.87805 1.24760 0.77092 0.74180 0.94523 1.90627 1.54101 1.50802 1.48837 1.86515 1.45628 1.63792 1.32254 1.23112 0.98377 0.99487 0.77397 1.18983 0.91072 0.93853 0.96775 1.21378 1.13065 1.32233 0.92269 0.91899 1.25963 0.95659 0.94926 1.02786 1.70090 1.18127 1.33694 1.34517 0.85322 0.77528 0.78953 0.78494 1.19489 1.20295 1.18898 1.84400 1.18287 1.37504 1.70055 0.88815 0.86619 0.89622 0.77914 0.85669 0.85451 0.92299 0.91954 0.84131 0.84444 0.92570 0.92439 0.97349 0.97407 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.43 71.24 0.74 0.22 16 2 C -0.05 -0.95 7.39 24.79 0.18 -0.77 16 3 C -0.07 -1.29 11.80 83.39 0.98 -0.31 16 4 N -0.51 -12.49 11.29 -303.83 -3.43 -15.92 16 5 C 0.18 3.86 7.60 88.34 0.67 4.53 16 6 C -0.02 -0.22 5.84 29.85 0.17 -0.05 16 7 C -0.10 -1.90 4.49 30.59 0.14 -1.76 16 8 C -0.10 -1.91 5.81 29.84 0.17 -1.73 16 9 C 0.45 14.76 7.96 71.24 0.57 15.32 16 10 O -0.55 -21.87 15.73 21.97 0.35 -21.52 16 11 O -0.37 -14.35 10.22 -51.43 -0.53 -14.88 16 12 C 0.09 4.08 5.40 71.98 0.39 4.47 16 13 C 0.03 1.64 5.35 29.85 0.16 1.80 16 14 C -0.55 -31.59 9.11 25.60 0.23 -31.35 16 15 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 18 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 22 O -0.21 -4.62 10.78 -3.72 -0.04 -4.66 16 23 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 25 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 27 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 30 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 31 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 34 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -76.30 328.66 4.59 -71.71 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.05 Total: 3.37 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 4.88 Total: -8.84 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -3.15 Total: -71.06 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.22 Total: -41.06 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -76.30 4.59 -71.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853920805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.915 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds