Wall clock time and date at job start Mon Mar 30 2020 07:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.34042 * 126.78045 * 270.02800 * 3 2 1 5 5 N 1.20923 * 111.56962 * 179.97438 * 4 3 2 6 6 C 1.30173 * 111.60616 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80325 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77663 * 89.98380 * 3 2 1 9 9 C 1.50700 * 128.00923 * 0.07017 * 8 3 2 10 10 O 1.45196 * 109.47269 * 269.98354 * 9 8 3 11 11 C 1.34234 * 116.99809 * 179.97438 * 10 9 8 12 12 O 1.20822 * 120.00211 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47201 * 180.02562 * 13 11 10 15 15 C 1.50693 * 109.47343 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00363 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00371 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99769 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47203 * 90.00117 * 19 17 15 21 21 H 1.48500 * 109.47125 * 210.00349 * 19 17 15 22 22 H 1.48510 * 109.47166 * 330.00284 * 19 17 15 23 23 H 1.08998 * 109.46910 * 299.99628 * 1 2 3 24 24 H 1.08996 * 109.47047 * 59.99753 * 1 2 3 25 25 H 1.09001 * 109.46686 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46910 * 240.00372 * 2 1 3 27 27 H 1.08996 * 109.47047 * 120.00247 * 2 1 3 28 28 H 1.08997 * 109.47199 * 90.02632 * 7 6 5 29 29 H 1.08997 * 109.47280 * 210.02484 * 7 6 5 30 30 H 1.09000 * 109.47129 * 330.02093 * 7 6 5 31 31 H 1.09004 * 109.46842 * 29.98196 * 9 8 3 32 32 H 1.08993 * 109.47368 * 149.97749 * 9 8 3 33 33 H 1.08999 * 109.46768 * 299.99968 * 13 11 10 34 34 H 1.09001 * 109.46966 * 59.99988 * 13 11 10 35 35 H 1.09004 * 109.47154 * 300.00155 * 14 13 11 36 36 H 1.08997 * 109.47278 * 59.99345 * 14 13 11 37 37 H 0.96994 * 119.99970 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2994 2.1776 -1.0736 5 7 2.6880 3.2779 -0.7563 6 6 2.7371 3.4143 0.5373 7 6 3.1707 4.6395 1.3000 8 6 2.3024 2.1854 1.0849 9 6 2.1715 1.8122 2.5391 10 8 0.8386 2.1477 3.0069 11 6 0.5571 1.8762 4.2910 12 8 1.3965 1.3743 5.0004 13 6 -0.8064 2.1962 4.8474 14 6 -0.8635 1.7913 6.3217 15 6 -2.2271 2.1107 6.8780 16 1 -2.9779 2.5582 6.2435 17 6 -2.5160 1.8327 8.1972 18 7 -3.7059 2.1119 8.6828 19 14 -1.2173 1.0593 9.2948 20 1 -0.4243 2.1288 9.9526 21 1 -1.8776 0.2246 10.3304 22 1 -0.3174 0.2097 8.4739 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.3063 5.2772 1.4850 29 1 3.6104 4.3388 2.2510 30 1 3.9091 5.1887 0.7159 31 1 2.3388 0.7414 2.6558 32 1 2.9104 2.3610 3.1230 33 1 -0.9935 3.2662 4.7574 34 1 -1.5646 1.6465 4.2896 35 1 -0.6761 0.7213 6.4122 36 1 -0.1053 2.3412 6.8792 37 1 -3.9092 1.9159 9.6107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922742970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:28 Heat of formation + Delta-G solvation = -48.872018 kcal Electronic energy + Delta-G solvation = -19975.494073 eV Core-core repulsion = 16720.838049 eV Total energy + Delta-G solvation = -3254.656024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.17138 -40.14636 -36.75350 -35.22233 -34.82263 -33.66323 -31.52688 -30.86000 -28.98792 -27.86906 -26.14169 -24.14102 -22.32038 -21.57868 -20.19703 -19.87309 -17.92931 -17.52035 -17.34564 -16.64116 -16.36598 -15.66607 -15.13345 -14.52372 -14.16758 -13.95070 -13.59124 -13.43841 -13.25608 -13.16190 -12.82096 -12.68798 -12.49740 -12.32107 -11.83002 -11.61906 -11.48081 -11.14206 -11.05579 -10.56716 -10.37983 -10.28260 -10.17258 -9.96291 -9.78025 -9.44533 -9.29135 -8.58655 -6.10015 -4.10210 1.13235 1.81945 2.60929 2.77572 3.18915 3.31773 3.39038 3.47311 3.92938 4.13301 4.43335 4.45198 4.60435 4.84531 4.87658 4.96217 5.06045 5.24653 5.25932 5.29040 5.38251 5.43468 5.50179 5.55678 5.60413 5.70716 5.89040 5.94339 5.96582 5.99500 6.41711 6.70549 7.19468 7.26732 7.67358 8.03500 8.12719 8.43696 8.92216 9.51574 11.02572 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.003833 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.963892 B = 7303.685611 C = 7634.679982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.046 4.046 3 C 0.002 3.998 4 O 0.098 5.902 5 N -0.368 5.368 6 C 0.040 3.960 7 C -0.079 4.079 8 C -0.209 4.209 9 C 0.145 3.855 10 O -0.358 6.358 11 C 0.458 3.542 12 O -0.510 6.510 13 C -0.095 4.095 14 C -0.002 4.002 15 C -0.528 4.528 16 H 0.075 0.925 17 C 0.071 3.929 18 N -0.900 5.900 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.262 1.262 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.026 0.974 36 H 0.021 0.979 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.646 -1.842 -18.015 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 C -0.062 4.062 4 O 0.035 5.965 5 N -0.075 5.075 6 C -0.119 4.119 7 C -0.136 4.136 8 C -0.213 4.213 9 C 0.071 3.929 10 O -0.276 6.276 11 C 0.302 3.698 12 O -0.397 6.397 13 C -0.133 4.133 14 C -0.039 4.039 15 C -0.566 4.566 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.186 1.186 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.044 0.956 36 H 0.040 0.960 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.101 -1.206 -18.697 22.862 hybrid contribution 0.639 -0.664 1.397 1.674 sum 13.740 -1.870 -17.301 22.172 Atomic orbital electron populations 1.21810 0.92696 1.03078 1.03443 1.20223 0.97381 0.86072 1.04733 1.24424 0.99046 0.96963 0.85764 1.84819 1.61480 1.17529 1.32668 1.73858 1.18148 0.99579 1.15918 1.23460 1.00958 0.97502 0.90001 1.20220 1.02312 0.92202 0.98889 1.20539 1.10154 0.94596 0.95970 1.20761 0.83516 1.00982 0.87635 1.86642 1.33583 1.77310 1.30046 1.24785 0.91963 0.74281 0.78731 1.90627 1.49549 1.40354 1.59209 1.21560 0.88043 1.04050 0.99615 1.19482 0.98138 0.97510 0.88791 1.21025 0.96840 1.42157 0.96568 0.90654 1.24952 0.95284 0.94911 0.97902 1.69899 1.20711 1.48001 1.15209 0.86810 0.82145 0.80114 0.80552 1.20155 1.21293 1.18599 0.91227 0.92021 0.91007 0.89145 0.88469 0.89587 0.89951 0.90385 0.90064 0.89995 0.88310 0.88271 0.95583 0.96044 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.90 37.16 0.37 -0.85 16 2 C -0.05 -0.35 6.35 -27.88 -0.18 -0.53 16 3 C 0.00 0.02 6.74 -35.31 -0.24 -0.22 16 4 O 0.10 1.18 11.20 17.17 0.19 1.37 16 5 N -0.37 -4.84 12.07 33.42 0.40 -4.43 16 6 C 0.04 0.49 7.33 -82.10 -0.60 -0.11 16 7 C -0.08 -0.74 10.39 36.00 0.37 -0.37 16 8 C -0.21 -2.48 5.96 -104.42 -0.62 -3.11 16 9 C 0.15 1.82 5.78 36.01 0.21 2.03 16 10 O -0.36 -5.38 10.20 -39.27 -0.40 -5.78 16 11 C 0.46 8.09 7.96 36.01 0.29 8.38 16 12 O -0.51 -10.29 15.73 -18.75 -0.29 -10.59 16 13 C -0.10 -1.79 5.75 -27.88 -0.16 -1.95 16 14 C 0.00 -0.04 3.33 -27.89 -0.09 -0.13 16 15 C -0.53 -14.63 9.66 -34.44 -0.33 -14.97 16 16 H 0.08 2.19 7.99 -52.48 -0.42 1.77 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 19 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.67 7.44 -51.93 -0.39 0.28 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.69 7.66 -51.93 -0.40 0.29 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.93 7.44 -51.93 -0.39 0.55 16 32 H 0.08 0.98 7.65 -51.93 -0.40 0.58 16 33 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.03 0.64 7.16 -51.93 -0.37 0.26 16 36 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -32.62 322.32 -5.52 -38.14 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -5.30 Total: -4.30 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.09 Total: -9.87 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 1.18 Total: -30.93 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.50 Total: -15.01 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.62 -5.52 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922742970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.729 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds