Wall clock time and date at job start Mon Mar 30 2020 07:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.47047 * 2 1 4 4 O 1.34042 * 126.78045 * 270.02800 * 3 2 1 5 5 N 1.20923 * 111.56962 * 179.97438 * 4 3 2 6 6 C 1.30173 * 111.60616 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80325 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77663 * 89.98380 * 3 2 1 9 9 C 1.50700 * 128.00923 * 0.07017 * 8 3 2 10 10 O 1.45196 * 109.47269 * 269.98354 * 9 8 3 11 11 C 1.34234 * 116.99809 * 179.97438 * 10 9 8 12 12 O 1.20822 * 120.00211 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47201 * 180.02562 * 13 11 10 15 15 C 1.50693 * 109.47343 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00363 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00371 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99769 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47203 * 90.00117 * 19 17 15 21 21 H 1.48500 * 109.47125 * 210.00349 * 19 17 15 22 22 H 1.48510 * 109.47166 * 330.00284 * 19 17 15 23 23 H 1.08998 * 109.46910 * 299.99628 * 1 2 3 24 24 H 1.08996 * 109.47047 * 59.99753 * 1 2 3 25 25 H 1.09001 * 109.46686 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46910 * 240.00372 * 2 1 3 27 27 H 1.08996 * 109.47047 * 120.00247 * 2 1 3 28 28 H 1.08997 * 109.47199 * 90.02632 * 7 6 5 29 29 H 1.08997 * 109.47280 * 210.02484 * 7 6 5 30 30 H 1.09000 * 109.47129 * 330.02093 * 7 6 5 31 31 H 1.09004 * 109.46842 * 29.98196 * 9 8 3 32 32 H 1.08993 * 109.47368 * 149.97749 * 9 8 3 33 33 H 1.08999 * 109.46768 * 299.99968 * 13 11 10 34 34 H 1.09001 * 109.46966 * 59.99988 * 13 11 10 35 35 H 1.09004 * 109.47154 * 300.00155 * 14 13 11 36 36 H 1.08997 * 109.47278 * 59.99345 * 14 13 11 37 37 H 0.96994 * 119.99970 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2994 2.1776 -1.0736 5 7 2.6880 3.2779 -0.7563 6 6 2.7371 3.4143 0.5373 7 6 3.1707 4.6395 1.3000 8 6 2.3024 2.1854 1.0849 9 6 2.1715 1.8122 2.5391 10 8 0.8386 2.1477 3.0069 11 6 0.5571 1.8762 4.2910 12 8 1.3965 1.3743 5.0004 13 6 -0.8064 2.1962 4.8474 14 6 -0.8635 1.7913 6.3217 15 6 -2.2271 2.1107 6.8780 16 1 -2.9779 2.5582 6.2435 17 6 -2.5160 1.8327 8.1972 18 7 -3.7059 2.1119 8.6828 19 14 -1.2173 1.0593 9.2948 20 1 -0.4243 2.1288 9.9526 21 1 -1.8776 0.2246 10.3304 22 1 -0.3174 0.2097 8.4739 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.3063 5.2772 1.4850 29 1 3.6104 4.3388 2.2510 30 1 3.9091 5.1887 0.7159 31 1 2.3388 0.7414 2.6558 32 1 2.9104 2.3610 3.1230 33 1 -0.9935 3.2662 4.7574 34 1 -1.5646 1.6465 4.2896 35 1 -0.6761 0.7213 6.4122 36 1 -0.1053 2.3412 6.8792 37 1 -3.9092 1.9159 9.6107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922742970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:27 Heat of formation + Delta-G solvation = -67.582202 kcal Electronic energy + Delta-G solvation = -19976.305407 eV Core-core repulsion = 16720.838049 eV Total energy + Delta-G solvation = -3255.467358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.07301 -41.49769 -37.99291 -36.17248 -35.61542 -35.59911 -33.43859 -31.73476 -29.82245 -29.09242 -27.73993 -24.83779 -23.86567 -22.73255 -21.43728 -21.01298 -19.37262 -18.79004 -18.37267 -18.16179 -17.60745 -16.95477 -16.26631 -16.01256 -15.40545 -15.15440 -14.79377 -14.48269 -14.31070 -14.27594 -13.98231 -13.78684 -13.65939 -13.40652 -13.18138 -12.91801 -12.54216 -12.38502 -12.22419 -12.01119 -11.86302 -11.78682 -11.67897 -11.52662 -11.40908 -10.97999 -10.77251 -10.37905 -8.30181 -6.34615 0.25497 0.87409 1.21519 1.36592 1.38840 1.51958 1.86992 2.07968 2.36254 3.05575 3.07020 3.34656 3.55644 3.75427 3.96371 4.12553 4.18126 4.27504 4.28421 4.39123 4.40353 4.51650 4.55676 4.59897 4.73021 4.85808 4.88006 4.98598 5.06816 5.12904 5.26464 5.35198 5.35786 5.38694 5.60521 6.22808 6.70335 6.80380 7.15752 7.30740 8.85469 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.003833 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.963892 B = 7303.685611 C = 7634.679982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.047 4.047 3 C 0.014 3.986 4 O 0.090 5.910 5 N -0.392 5.392 6 C 0.033 3.967 7 C -0.081 4.081 8 C -0.228 4.228 9 C 0.145 3.855 10 O -0.353 6.353 11 C 0.473 3.527 12 O -0.536 6.536 13 C -0.092 4.092 14 C 0.002 3.998 15 C -0.532 4.532 16 H 0.049 0.951 17 C 0.014 3.986 18 N -0.944 5.944 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.255 1.255 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.020 0.980 36 H 0.017 0.983 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.103 -2.710 -18.649 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 C -0.050 4.050 4 O 0.030 5.970 5 N -0.101 5.101 6 C -0.126 4.126 7 C -0.138 4.138 8 C -0.232 4.232 9 C 0.072 3.928 10 O -0.270 6.270 11 C 0.318 3.682 12 O -0.426 6.426 13 C -0.130 4.130 14 C -0.035 4.035 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.584 5.584 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.179 1.179 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.038 0.962 36 H 0.035 0.965 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.560 -2.074 -19.371 24.321 hybrid contribution 0.148 -0.371 1.470 1.524 sum 14.708 -2.445 -17.900 23.296 Atomic orbital electron populations 1.21800 0.92869 1.03931 1.02297 1.20440 0.97029 0.84406 1.06574 1.24986 0.97144 0.97764 0.85084 1.84795 1.61584 1.17496 1.33129 1.73854 1.19474 1.00274 1.16541 1.23914 1.00319 0.98385 0.89961 1.20339 1.02737 0.91465 0.99248 1.20556 1.11712 0.95080 0.95896 1.20947 0.82012 1.01936 0.87950 1.86602 1.35319 1.76779 1.28347 1.24244 0.90983 0.73650 0.79305 1.90621 1.50164 1.41710 1.60082 1.21341 0.89661 1.05025 0.96929 1.19322 0.95406 0.96974 0.91834 1.21352 0.98143 1.41095 0.96420 0.93223 1.25814 0.97247 0.95657 0.99630 1.70023 1.22777 1.49743 1.15861 0.85816 0.79590 0.79493 0.78761 1.19330 1.20607 1.17859 0.93371 0.92137 0.89194 0.86611 0.87333 0.89326 0.88906 0.89345 0.88802 0.89360 0.87106 0.86876 0.96171 0.96465 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.90 71.98 0.71 -1.41 16 2 C -0.05 -0.59 6.35 29.85 0.19 -0.40 16 3 C 0.01 0.28 6.74 25.04 0.17 0.45 16 4 O 0.09 2.07 11.20 71.61 0.80 2.87 16 5 N -0.39 -9.97 12.07 -49.55 -0.60 -10.57 16 6 C 0.03 0.77 7.33 43.58 0.32 1.09 16 7 C -0.08 -1.41 10.39 71.23 0.74 -0.67 16 8 C -0.23 -5.07 5.96 -19.73 -0.12 -5.18 16 9 C 0.15 3.34 5.78 71.24 0.41 3.75 16 10 O -0.35 -9.95 10.20 -51.46 -0.53 -10.47 16 11 C 0.47 15.84 7.96 71.24 0.57 16.41 16 12 O -0.54 -20.65 15.73 21.97 0.35 -20.30 16 13 C -0.09 -3.34 5.75 29.85 0.17 -3.17 16 14 C 0.00 0.10 3.33 29.84 0.10 0.20 16 15 C -0.53 -29.58 9.66 25.60 0.25 -29.33 16 16 H 0.05 2.94 7.99 -2.91 -0.02 2.91 16 17 C 0.01 0.83 5.47 84.66 0.46 1.29 16 18 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 19 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.25 -11.70 6.54 99.48 0.65 -11.05 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.11 1.18 7.44 -2.39 -0.02 1.16 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.40 7.66 -2.39 -0.02 1.38 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.93 7.44 -2.39 -0.02 1.92 16 32 H 0.09 1.94 7.65 -2.39 -0.02 1.92 16 33 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.02 0.95 7.16 -2.38 -0.02 0.94 16 36 H 0.02 0.81 7.53 -2.39 -0.02 0.79 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -69.24 322.32 7.19 -62.05 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.01 Total: 4.51 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 3.97 Total: -16.97 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -0.30 Total: -68.11 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: 0.62 Total: -27.91 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -69.24 7.19 -62.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922742970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.531 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds