Wall clock time and date at job start Mon Mar 30 2020 07:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47296 * 2 1 4 4 O 1.34037 * 126.77546 * 270.11289 * 3 2 1 5 5 N 1.20924 * 111.56577 * 180.28969 * 4 3 2 6 6 C 1.30170 * 111.60213 * 359.75771 * 5 4 3 7 7 C 1.50702 * 126.80097 * 180.02562 * 6 5 4 8 8 C 1.35447 * 126.77447 * 89.99873 * 3 2 1 9 9 C 1.50699 * 128.01055 * 0.02562 * 8 3 2 10 10 O 1.45209 * 109.46944 * 269.70395 * 9 8 3 11 11 C 1.34228 * 116.99481 * 179.97438 * 10 9 8 12 12 O 1.20825 * 120.00238 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99651 * 180.02562 * 11 10 9 14 14 H 1.09007 * 109.46998 * 300.00176 * 13 11 10 15 15 C 1.53000 * 109.47112 * 60.00053 * 13 11 10 16 16 C 1.50703 * 109.47303 * 180.02562 * 13 11 10 17 17 H 1.08005 * 119.99546 * 354.35808 * 16 13 11 18 18 C 1.37875 * 119.99901 * 174.35790 * 16 13 11 19 19 N 1.31512 * 119.99810 * 156.52530 * 18 16 13 20 20 Si 1.86798 * 120.00031 * 336.79394 * 18 16 13 21 21 H 1.48500 * 109.46862 * 179.72431 * 20 18 16 22 22 H 1.48495 * 109.47547 * 299.72815 * 20 18 16 23 23 H 1.48498 * 109.47018 * 59.73163 * 20 18 16 24 24 H 1.09001 * 109.47137 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47054 * 300.00259 * 1 2 3 26 26 H 1.09002 * 109.46981 * 60.00107 * 1 2 3 27 27 H 1.08996 * 109.47054 * 239.99741 * 2 1 3 28 28 H 1.08998 * 109.46501 * 119.99792 * 2 1 3 29 29 H 1.09009 * 109.46906 * 269.97297 * 7 6 5 30 30 H 1.09000 * 109.47116 * 29.96816 * 7 6 5 31 31 H 1.08995 * 109.47396 * 149.97350 * 7 6 5 32 32 H 1.08989 * 109.47127 * 149.70599 * 9 8 3 33 33 H 1.09000 * 109.46891 * 29.69751 * 9 8 3 34 34 H 1.08996 * 109.47246 * 53.11494 * 15 13 11 35 35 H 1.09003 * 109.46967 * 173.11539 * 15 13 11 36 36 H 1.09007 * 109.46955 * 293.10768 * 15 13 11 37 37 H 0.97006 * 120.00067 * 355.20971 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 2.2980 2.1781 -1.0736 5 7 2.6929 3.2761 -0.7564 6 6 2.7431 3.4121 0.5372 7 6 3.1828 4.6352 1.3000 8 6 2.3028 2.1853 1.0849 9 6 2.1714 1.8123 2.5391 10 8 0.8406 2.1548 3.0083 11 6 0.5589 1.8843 4.2925 12 8 1.3964 1.3777 5.0009 13 6 -0.8023 2.2115 4.8504 14 1 -0.9838 3.2826 4.7609 15 6 -1.8715 1.4460 4.0683 16 6 -0.8592 1.8124 6.3025 17 1 -0.0303 1.2844 6.7503 18 6 -1.9696 2.1214 7.0593 19 7 -2.2482 1.4185 8.1353 20 14 -3.0822 3.5335 6.5520 21 1 -4.2011 3.6546 7.5208 22 1 -2.3023 4.7971 6.5360 23 1 -3.6278 3.2713 5.1960 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.2561 4.5826 1.4833 30 1 2.9572 5.5278 0.7166 31 1 2.6534 4.6797 2.2517 32 1 2.9136 2.3570 3.1224 33 1 2.3329 0.7406 2.6553 34 1 -1.6221 0.3850 4.0551 35 1 -2.8410 1.5855 4.5465 36 1 -1.9130 1.8222 3.0461 37 1 -1.7136 0.6404 8.3584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922857225.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:33 Heat of formation + Delta-G solvation = -46.242477 kcal Electronic energy + Delta-G solvation = -20612.723607 eV Core-core repulsion = 17358.181609 eV Total energy + Delta-G solvation = -3254.541998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.04577 -39.77207 -36.42069 -34.98190 -34.69657 -33.97591 -31.35629 -30.66087 -28.85903 -27.40674 -24.93916 -24.04446 -23.17559 -21.64657 -20.06456 -19.73245 -17.74066 -17.52116 -17.17894 -16.64003 -15.95046 -15.60914 -14.92194 -14.44861 -13.78609 -13.51375 -13.48244 -13.35120 -13.11846 -12.93822 -12.67646 -12.58054 -12.21009 -11.94248 -11.71469 -11.50964 -11.49454 -11.18194 -10.99452 -10.58299 -10.33594 -10.23006 -10.05122 -9.90903 -9.55252 -9.18630 -9.04747 -8.26861 -6.58690 -4.15888 1.27107 1.96139 2.90975 3.08957 3.33302 3.38902 3.50429 3.58335 4.06990 4.26565 4.42846 4.61839 4.76309 4.98825 4.99772 5.11408 5.12155 5.31012 5.35940 5.40270 5.53118 5.63315 5.66449 5.73729 5.82880 5.85438 6.01515 6.10829 6.17189 6.39597 6.46064 6.80317 7.01656 7.16585 7.77048 8.15176 8.35568 8.66482 8.90085 9.50212 10.81558 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.004981 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.079510 B = 5619.528048 C = 5914.586736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.045 4.045 3 C -0.002 4.002 4 O 0.096 5.904 5 N -0.370 5.370 6 C 0.040 3.960 7 C -0.080 4.080 8 C -0.203 4.203 9 C 0.143 3.857 10 O -0.362 6.362 11 C 0.472 3.528 12 O -0.506 6.506 13 C 0.035 3.965 14 H 0.054 0.946 15 C -0.140 4.140 16 C -0.608 4.608 17 H 0.077 0.923 18 C 0.042 3.958 19 N -0.890 5.890 20 Si 1.031 2.969 21 H -0.281 1.281 22 H -0.281 1.281 23 H -0.274 1.274 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.910 0.332 -16.897 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.083 4.083 3 C -0.066 4.066 4 O 0.034 5.966 5 N -0.077 5.077 6 C -0.120 4.120 7 C -0.137 4.137 8 C -0.207 4.207 9 C 0.068 3.932 10 O -0.281 6.281 11 C 0.315 3.685 12 O -0.392 6.392 13 C 0.015 3.985 14 H 0.072 0.928 15 C -0.198 4.198 16 C -0.645 4.645 17 H 0.095 0.905 18 C -0.165 4.165 19 N -0.522 5.522 20 Si 0.858 3.142 21 H -0.207 1.207 22 H -0.207 1.207 23 H -0.200 1.200 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.141 1.818 -17.247 18.398 hybrid contribution 1.505 -1.194 0.294 1.944 sum 7.646 0.623 -16.953 18.608 Atomic orbital electron populations 1.21813 0.92784 1.02981 1.03472 1.20202 0.97353 0.86115 1.04605 1.24391 0.99478 0.96942 0.85757 1.84800 1.61444 1.17701 1.32704 1.73836 1.18126 0.99777 1.15955 1.23453 1.00985 0.97570 0.89971 1.20228 1.01928 0.92111 0.99434 1.20601 1.09512 0.94450 0.96151 1.20709 0.84371 1.00704 0.87382 1.86684 1.33028 1.77475 1.30893 1.24836 0.91846 0.73959 0.77818 1.90532 1.49417 1.40065 1.59189 1.19047 0.84445 0.97856 0.97127 0.92792 1.22080 0.99843 1.00104 0.97735 1.21894 1.06604 1.43390 0.92613 0.90495 1.25684 0.96428 1.00108 0.94259 1.70836 1.37917 1.16177 1.27276 0.84233 0.76860 0.76645 0.76491 1.20688 1.20738 1.19998 0.91117 0.91078 0.92121 0.89274 0.88502 0.90058 0.90305 0.89564 0.90282 0.90406 0.93421 0.91728 0.94481 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.90 37.16 0.37 -1.10 16 2 C -0.04 -0.41 6.35 -27.88 -0.18 -0.59 16 3 C 0.00 -0.02 6.74 -35.30 -0.24 -0.26 16 4 O 0.10 1.28 11.20 17.19 0.19 1.48 16 5 N -0.37 -5.34 12.07 33.42 0.40 -4.93 16 6 C 0.04 0.54 7.33 -82.10 -0.60 -0.06 16 7 C -0.08 -0.87 10.39 36.01 0.37 -0.50 16 8 C -0.20 -2.81 5.96 -104.42 -0.62 -3.43 16 9 C 0.14 2.16 5.79 36.01 0.21 2.37 16 10 O -0.36 -6.67 10.13 -39.25 -0.40 -7.06 16 11 C 0.47 10.42 7.24 36.01 0.26 10.68 16 12 O -0.51 -12.48 15.22 -18.75 -0.29 -12.76 16 13 C 0.03 0.82 2.34 -92.92 -0.22 0.60 16 14 H 0.05 1.22 6.71 -51.93 -0.35 0.87 16 15 C -0.14 -2.91 8.85 37.16 0.33 -2.58 16 16 C -0.61 -16.98 8.57 -34.44 -0.30 -17.28 16 17 H 0.08 2.41 7.02 -52.48 -0.37 2.04 16 18 C 0.04 1.18 5.19 -17.82 -0.09 1.09 16 19 N -0.89 -26.60 13.70 55.43 0.76 -25.84 16 20 Si 1.03 23.80 26.45 -169.99 -4.50 19.31 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -5.74 6.15 56.52 0.35 -5.39 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.85 7.43 -51.93 -0.39 0.46 16 29 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.16 8.13 -51.94 -0.42 0.74 16 33 H 0.08 1.11 7.43 -51.93 -0.39 0.72 16 34 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 35 H 0.06 1.38 5.48 -51.93 -0.28 1.09 16 36 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -31.85 317.99 -4.94 -36.80 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.21 Total: -0.72 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.70 Total: -11.05 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 1.16 Total: -30.78 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.49 Total: -18.35 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.50 Total: 19.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.85 -4.94 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922857225.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.447 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds